BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45610.1
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484945 jgi|Araly1|484945|fgenesh2_kg.5__937__AT3G45610.1 1247 0.0
> Ahg484945 jgi|Araly1|484945|fgenesh2_kg.5__937__AT3G45610.1
Length=941
Score = 1247 bits (675), Expect = 0.0
Identities = 872/961 (91%), Gaps = 37/961 (4%)
Strand=Plus/Plus
Query 41 tctctttatctcatactcc-tctACATTTCAAAGAAGTTTCTCAATTGGTTGAGATGGAT 99
||||||| ||| | |||| ||||||||||||||||||||||||||| || |||||||||
Sbjct 13 TCTCTTT-TCT--TTCTCCTTCTACATTTCAAAGAAGTTTCTCAATTAGTGGAGATGGAT 69
Query 100 TATTCTTCGATGCATCAGAATGT-GATGGGAGTATCTTCATGTTCAACACAAGATTATCA 158
|||||||||||||| |||||||| | | |||||||||||||||||| ||||||||| |||
Sbjct 70 TATTCTTCGATGCACCAGAATGTCG-TTGGAGTATCTTCATGTTCATCACAAGATTTTCA 128
Query 159 AAACCAGAAGAAACCATTGTCGGCGACTAGGCCAGCTCCACCAGAGCAATCATTAAGATG 218
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 129 GAACCAGAAGAAACCATCGTCGGCGACTAGGCCAGCTCCACCGGAGCAATCATTAAGATG 188
Query 219 CCCTCGCTGTGACTCCACCAACACAAAGTTCTGCTACTACAACAACTACAGTCTCTCTCA 278
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CCCTCGTTGTGACTCCACCAACACAAAGTTCTGCTACTACAACAACTACAGTCTCTCTCA 248
Query 279 ACCTCGCTACTTCTGCAAATCTTGTAGGAGATACTGGACCAAGGGTGGAATCCTAAGAAA 338
|||||||||||||||||||||||| ||||||| ||||| || || |||||| |||||||
Sbjct 249 GCCTCGCTACTTCTGCAAATCTTGTCGGAGATATTGGACTAAAGGCGGAATCTTAAGAAA 308
Query 339 CATCCCAATCGGTGGTGCTTACCGGAAACACAAACGCTCCTCCTCCGCAACCAAAAGCCT 398
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 309 CATCCCAATCGGTGGTGCTTACCGGAAACACAAACGCTCCTCTTCCGCAAGTAAAAGCCT 368
Query 399 CAGAACAACCCCTGAGCCCACGATGACCCATGACGGCA-AATCATTCCCAACGGCGAGTT 457
||| ||||||||||| || ||| | |||||||| || || ||||| | |||| |||||
Sbjct 369 CAGGACAACCCCTGAACCGACGGCAAGCCATGACGCCAGAA-CATTCTCGACGGGGAGTT 427
Query 458 TTGGCTATAATAATAATAACATTAGCAACGAACAGATGGAGCTTGGGTTAGCATATGCCT 517
||||| | ||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 428 TTGGCGGTTATAATAATAACATTAGCAATGAACAGATGGAGCTTGGGTTAGCATTTGCCT 487
Query 518 TGTTGAACAAGCAACCTCTAGGGGTTTCTTCACATCTAGGGTTCGGAAGCTCTCAGTCTC 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TGTTGAACAAGCAACCTCTAGGGGTTTCTTCACATCTAGGGTTCGGAAGCTCTCAGTCTC 547
Query 578 CAATGGCCATGGATGGCGTGTATGGGACCACGAGCCATCAGATGGAGAACACGGGGTATG 637
| |||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 548 CGATGGTCATGGATGGCGTGTATGGGACCACGAGCCAGCAGATGGAGAACGCGGGGTATG 607
Query 638 CGTTTGGAAATGGTGGAGGCGGTATGGAGCAGATGGCGACAAGTGATCCAAACAGGGTTT 697
||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct 608 CGTTTGGGAATGGTGGAGGCGGTCTGGAGCAGATGGCGACAAGTGATCCAAACAAGGTCT 667
Query 698 TGTGGGGATTCCCCTGGCAGATGAACATGGGAGGAGGAAGTGGTCATGGTCATGGTCATG 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TGTGGGGATTCCCCTGGCAGATGAACATGGGAGGAGGAAGTGGTCATGGTCATGGTCATG 727
Query 758 TTGATCAGATTGATTCAGGGAGAGAGATTTGGAGCAGTACTGTCAACTACATTAATACTG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 TTGATCAGATTGATTCAGGGAGAGAGATTTGGAGCAGTACTGTCAACTACATTAATACTG 787
Query 818 GTGCTTTATTGTAGTCTATTTATTTTAAAATTT-GGGTTTGATTAGGGTTTGGATTGTGG 876
||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||| |||
Sbjct 788 GTGCTTTATTGTAGTTTGTTTATTT-AAAATTTTGGGTTTGATTAGGGTTTGGATTCTGG 846
Query 877 TCGTCTTGGTTAGAGAAAGGGATAATATGAGTTTGGGGTTAATGGTAAAAGAAAATAGAT 936
|| |||| || | | || | || | | || | | ||| ||||||||||
Sbjct 847 TCTTCTT--TT-G-G---GG--T--TA--A-T--GG--T----G--AAA-GAAAATAGAT 881
Query 937 ATGTTGTGCTTTCTTTAAAGATTTTCAGTTACTTGGGAA-ATGAATTGTGtttttttGTT 995
||||||||||||||||||||||||||| |||||| | || ||||||||||||||||| ||
Sbjct 882 ATGTTGTGCTTTCTTTAAAGATTTTCACTTACTTAG-AATATGAATTGTGTTTTTTTTTT 940
Query 996 T 996
|
Sbjct 941 T 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39914694099
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5