BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45650.1
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323231 jgi|Araly1|323231|fgenesh1_pm.C_scaffold_5000775 2632 0.0
Ahg347652 jgi|Araly1|347652|fgenesh1_pg.C_scaffold_5001044 1423 0.0
> Ahg323231 jgi|Araly1|323231|fgenesh1_pm.C_scaffold_5000775
Length=1677
Score = 2632 bits (1425), Expect = 0.0
Identities = 1595/1679 (95%), Gaps = 4/1679 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAGTTCAGTTACTGGCGATGCAGAAACAGCGATATCAGCAGATTCAAGCACCAAA 60
||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGCTAGTTCAGTTACAGGCGATGCGGAAACAGTGATATCAGCAGATTCAAGCACCAAA 60
Query 61 CGCCGTGGTGGAGGTTGGATTACCTTTCCGTTTATGATAGCTACGTTGTTAGGCTTGACA 120
||| | |||||||||||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 61 CGCAGCGGTGGAGGTTGGATCACTTTTCCGTTTATGATAGTTACGTTGTTAGGCTTGACA 120
Query 121 ATAGCTGCGTGGGGTTGGTTACTTAACTTGATCGTCTACCTGATCGAGGAATTCAACGTG 180
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 121 ATAGCTGCGTGGGGTTGGTTACTTAACTTGATCGTCTACTTGATTGAGGAATTCAACGTG 180
Query 181 AAGAGCATTGCAGCGGCTCAGATTGCTAATATTGTTAGTGGTTGTATCTGTATGGTTCCA 240
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AAGAGCATCGCAGCGGCTCAGATTGCTAACATTGTTAGTGGTTGTATCTGTATGGTTCCA 240
Query 241 GCTGTTGCAGCCATTGCATCTGACTCTTTCTTTGGAACCATTCCTGTTATCTCAGTTTCA 300
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTATGGCAGCCATTGCATCTGACTCTTTCTTTGGAACCATTCCTGTTATCTCAGTTTCA 300
Query 301 GCTTTCATTTCTCTTATGGGTGTAGCTCTACTGACTCTAACTGCTTCACTTGACACTTTA 360
|||||||||||||||||||| |||||||| ||||||||||| ||||| |||||| |||||
Sbjct 301 GCTTTCATTTCTCTTATGGGCGTAGCTCTGCTGACTCTAACCGCTTCGCTTGACTCTTTA 360
Query 361 AGACCTAGACCCTGCGAAACAGCTTCAATACTATGCCAGTCTCCTTCGAAAACCCAGCTC 420
||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 AGACCTAGAGCCTGTGAAACAGCTTCAAGCCTATGCCAGTCTCCTTCGAAAACCCAGCTC 420
Query 421 GGAGTCCTTTACACGGCCATAACTCTAGCCTCTATAGGAACAGGTGGGACACGGTTCACA 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGAGTTCTTTACACGGCCATAACTCTAGCCTCTATAGGAACAGGTGGGACACGGTTCACA 480
Query 481 TTAGCAACTGCTGGTGCGAACCAGTATGAAAAAACTAAAGACCAAGGAAGCTTTTTCAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTAGCAACTGCTGGTGCGAACCAGTATGAAAAAACTAAAGACCAAGGAAGCTTTTTCAAC 540
Query 541 TGGTTTTTCTTCACAACATATCTAGCCGGAGCTATAAGTGCAACCGCCATTGTCTACACC 600
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 TGGTTTTTCTTCACTACGTATCTTGCCGGAGCTATAAGTGCAACCGCCATTGTCTACACT 600
Query 601 GAAGACAATATCAGCTGGACCCTTGGG-TTTGGTCTGTCTGTAGCCGCTAATTTCTTCAG 659
|||||||| |||||||||||| ||||| ||||||||||| ||||| ||||| |||||||
Sbjct 601 GAAGACAACATCAGCTGGACC-TTGGGGTTTGGTCTGTCCGTAGCTGCTAACCTCTTCAG 659
Query 660 TTTTTTGGTTTTCGTCTCGGGGAAAAGATTCTACAAGCATGACAAGCCTTTGGGAAGTCC 719
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 TTTTTTGGTTTTCATCTCGGGGAAAAGATTCTACAAGCACGACAAGCCTTTGGGAAGTCC 719
Query 720 CTTCACAAGTCTACTATGCGTCATTTTCGCAGCATTACGCAAAAGAAAAGCTGTGGTTTC 779
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 720 CTTCACAAGTCTACTATGCGTCATTTTCGCCGCGGTACGCAAAAGAAAAGCTGTGGTTTC 779
Query 780 CACCAACGAAAAAGACTACCACAATGAATCAATCACAATGCCCACAAAGAGTTTCAGGTT 839
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 CACCAACGAAAAAGACTACCACAATGAATCTATCACAATGCCCACAAAGAGTTTCAGGTT 839
Query 840 CTTTAACCGTGCAGCATTGAAACAGGAAGACGAGGTAAAACCAGATGGCACAATTCGCAA 899
||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||
Sbjct 840 CTTTAACCGTGCAGCGTTGAAACAAGAAGACGAGGTTAAACCAGACGGCACAATTCGTAA 899
Query 900 TCCATGGAGACTATGCAGCGTTCAACAAGTGGAAGATTTCAAAGCAGTCATAAGAATCAT 959
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 900 TCCCTGGAGACTATGCAGCGTTCAACAAGTAGAAGATTTCAAAGCAGTCATAAGAATTAT 959
Query 960 CCCTCTCGCCTTAGCCACAATATTCTTGAGCACTCCAATCGCAATGCAACTAAGCTTAAC 1019
|||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 960 CCCTCTTGCGTTAGCTACAATATTCTTAAGCACTCCAATCGCAATGCAGCTAAGCTTAAC 1019
Query 1020 AGTTCTTCAAGGTCTGGTGATGGACCGGAGGCTTGGTCCTAGCTTCAAAATCCCTGCAGG 1079
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 AGTTCTTCAAGGTCTGGTGATGGACCGGAGGCTTGGCCCTAGCTTCAAAATCCCTGCAGG 1079
Query 1080 CTCTCTCCAAGTCATAACACTTCTCTCCACTTGCCTATTTATCATAGTCAACGATAGGGT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 1080 CTCTCTCCAAGTCATAACACTTCTCTCCACTTGCCTATTTATCATAGTCAATGATCGGTT 1139
Query 1140 TCTCTATCCATTTTACCAAAAGTTAACGGGAAAGCACCTCACACCGCTCCAACGAGTTGG 1199
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||
Sbjct 1140 TCTCTATCCATTTTACCAAAAGTTAACGGGAAAGTTCCTTACACCGCTCCAACGAGTCGG 1199
Query 1200 GATAGGCCATGCGTTCAACATTCTAAGCATGGCTGTGACTGCCATAGTTGAAGCAAAGCG 1259
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1200 TATAGGCCATGCTTTCAACATTCTAAGCATGGCCGTGACTGCCATAGTTGAAGCAAAGCG 1259
Query 1260 ATTAAAGATAGTACAGAAGGGTCATTTTCTCGGATCATCATCTGTTGCTGACATGTCAGT 1319
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1260 ATTGAAGATAGTACAGAAGGGTCATTTTCTCGGATCATCATCCGTTGCTGACATGTCAGT 1319
Query 1320 CTTATGGCTCTTCCCTCCTCTAGTCATAGTAGGAATCGGAGAGGCCTTCCATTTCCCAGG 1379
||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 CTTGTGGCTCTTCCCACCTCTAGTCATAGTAGGAATTGGAGAGGCCTTCCATTTCCCAGG 1379
Query 1380 GAATGTAGCTCTGTGCTATCAAGAGTTTCCAGAGTCTATGAGAAGCACCGCAACATCGAT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GAATGTAGCTCTGTGCTATCAAGAGTTTCCAGAGTCTATGAGAAGCACCGCAACATCGAT 1439
Query 1440 AACCTCGGTGGTGATTGGGATATGTTTCTACACAAGCACTGCTTTGATAGATCTGATTCA 1499
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1440 TACCTCGGTGGTGATTGGGATATGTTTCTACACAAGCACTGCTTTGATTGATCTGATTCA 1499
Query 1500 AAGGACCACGGCGTGGTTACCAGATGACATAAACCATGGAAGAGTTGACAATGTTTACTG 1559
|||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1500 GAGGACCACCGCGTGGTTACCAGATGACATTAACCACGGAAGAGTTGACAATGTTTACTG 1559
Query 1560 GATTTTAGTCATAGGAGGAGTCTTGAATCTTGGCTATTTTCTTGTGTGTTCTT-GGCTAT 1618
| ||||||| || |||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 1560 GGTTTTAGTAATTGGAGGAGTCTTGAATCTTGGCTATTTTCTTGTGTGTTCTTTGGTT-T 1618
Query 1619 ACAGATACAGAAACCTCAAGGATGATGATCATAAGCAAGCTGCAAATGTCTCTCACTGA 1677
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1619 ACAGATACAGAAACCTCAAGGATGATGATCATGAGCAATCTGCAAATGTCTCTCACTGA 1677
> Ahg347652 jgi|Araly1|347652|fgenesh1_pg.C_scaffold_5001044
Length=1680
Score = 1423 bits (770), Expect = 0.0
Identities = 1122/1287 (87%), Gaps = 43/1287 (3%)
Strand=Plus/Plus
Query 392 TATGCC-AGTCTCCTTCGAAAACCCAGCTCGGAGTCCTTTACACGGCCATAACTCTAGCC 450
|||||| || | ||| |||| | ||||||||| |||||||||||||| |||||| ||| |
Sbjct 401 TATGCCAAG-CCCCTACGAACATCCAGCTCGGTGTCCTTTACACGGCAATAACTTTAGGC 459
Query 451 TCTATAGGAACAGGTGGGAC-ACGGTTCACATTAGCAACTGCTGGTGCGAACCAGTATGA 509
||| | ||| |||||||| | |||||||| || || || ||||||||||||||||||||
Sbjct 460 TCTGTGGGAGCAGGTGGG-CTGCGGTTCACCTTGGCCACCGCTGGTGCGAACCAGTATGA 518
Query 510 AAAAACTAAAGACCAAGGAAGCTTTTTCAACTGGTTTTTCTTCACAACATATCTAGCCGG 569
||||||| |||||||||| |||||||||||||| |||||||||||| |||||||| |
Sbjct 519 AAAAACTGAAGACCAAGGCAGCTTTTTCAACTGTTTTTTCTTCACATGGTATCTAGCTGC 578
Query 570 AGCTATAAGTGCAACCGCCATTGTCTACACCGAAGACAATATCAGCTGGACCCTTGGGTT 629
||||||||| ||| |||||||||||||||||||| || |||||||||| |||||||
Sbjct 579 CTCTATAAGTGTAACAGCCATTGTCTACACCGAAGAAAACATCAGCTGGAGTTTTGGGTT 638
Query 630 TGGTCTGTCTGTAGCCGCTAATTTCTTCA-GTTTTTTGGTTTTCGTCTCGGGGAAAAGAT 688
|||| | | |||||| |||||| | || | | || |||||||| |||||||||||||||
Sbjct 639 TGGTTTATGTGTAGCTGCTAATCTGTT-AGGCTTGATGGTTTTCATCTCGGGGAAAAGAT 697
Query 689 TCT---A-CA--A--GCATGACAAGCCTTTGGGAAGTCCCTTCACAAGTCTACTAT-GCG 739
||| | || | |||||||||||||||||||||||||||||||||| |||| | |||
Sbjct 698 TCTACAAGCATGAGTGCATGACAAGCCTTTGGGAAGTCCCTTCACAAGTTTACT-TCGCG 756
Query 740 TCAT-TTTCGCAGCATTACGCAAAAGAAAAGCTGTGGTTTCCACCAACGAAAAAGACTAC 798
|||| ||| | ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 757 TCATCTTT-TCTGCATTACTTAAAAGAAAAGCTGTGGTTTCCACCAACGAGAAAGACTAC 815
Query 799 CACAATGAATCAATCACAATGCC-CACAA-AGAGTTTCAGGTTCTTTAACCGTGCAGCAT 856
|||| |||||||| | || ||| | ||| | || | | || | ||||||
Sbjct 816 CACAGTGAATCAA--AGAA-GCCGC-CAACAAAG----A-G----TT-----T-CAGCAT 856
Query 857 TGAAACAGGAAGACGAGGTAAAACCAGATGGCACAATTCGCAATCCATGGAGACTATGCA 916
|||||||||| || ||||| || |||| ||||||||||||||| ||||||||||||||
Sbjct 857 TGAAACAGGATGATGAGGTTAATGCAGACAGCACAATTCGCAATCAATGGAGACTATGCA 916
Query 917 GCGTTCAACAAGTGGAAGATTTCAAAGCAGTCATAAGAATCATCCCTCTCGCCTTAGCCA 976
||||| |||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 917 GCGTTAAACAAGTGGAAGATTTCAAAGCAGTCATAAGAATAATCCCTCTTGTGTTAGCCA 976
Query 977 CAATATTCTTGAGCACTCCAATCGCAATGCAACTAAGCTTAACAGTTCTTCAAGGTCTGG 1036
||||||||||||||||||||| || ||||| ||| |||||||||| |||||||||||||
Sbjct 977 TAATATTCTTGAGCACTCCAATAGCGATGCAGCTAGGCTTAACAGTACTTCAAGGTCTGG 1036
Query 1037 TGATGGACCGGAGGCTTGGTCCT-AGCTTCAAAATCCCTGCAGGCTCTCTCCAAGTCATA 1095
||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1037 TGATGGACCGGAGACTTGGCCCTCA-CTTCAAAATCCCTGCAGGCTCTCTCCAAGTCATA 1095
Query 1096 ACACTTCTCTCCACTTGCCTATTTATCATAGTCAACGATAGGGTTCTCTATCCATTTTAC 1155
|||||||||||||||||||| ||| |||||||||||||| || ||||||| |||||||||
Sbjct 1096 ACACTTCTCTCCACTTGCCTGTTTCTCATAGTCAACGATCGGTTTCTCTACCCATTTTAC 1155
Query 1156 CAAAAGTTAACGGGAAAGCACCTCACACCGCTCCAACGAGTTGGG-ATAGGCCATGCGTT 1214
||||| |||| |||||| || ||||||| | ||| | | |||| |||||||||| ||
Sbjct 1156 CAAAAACTAACCGGAAAGTTCCCCACACCGATACAAAG-GGTGGGAATAGGCCATGTTTT 1214
Query 1215 CAACATTCTAAGCATGGCTGTGACTGCCATAGTTGAAGCAAAGCGATTAAAGATAGTACA 1274
||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1215 CAACATTATAAGCATGGCCATGACTGCCATAGTTGAAGCAAAAAGATTAAAGATAGTACA 1274
Query 1275 GAAGGGTCATTTTCTCGGATCATCATCTGTTGCTGACATGTCAGTCTTATGGCTCTTCCC 1334
||| | | || |||| | ||||||||| |||||||||||||||||||| ||| | |||||
Sbjct 1275 GAACGTTAATCTTCTTGAATCATCATCCGTTGCTGACATGTCAGTCTTGTGGTTATTCCC 1334
Query 1335 TCCTCTAGTCATAGTAGGAATCGGAGAGGCCTTCCATTTCCCAGGGAATGTAGCTCTGTG 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1335 TCCTCTAGTCATAGTAGGAATCGGAGAGGCCTTCCATTTCCCAGGGAATGTAGCTCTATG 1394
Query 1395 CTATCAAGAGTTTCCAGAGTCTATGAGAAGCACCGCAACATCGATAACCTCGGTGGTGAT 1454
||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1395 CTATCAAGAATTTCCAGAGTCTATGAGAAGCCCCGCAACATCGATCACCTCGGTGGTGAT 1454
Query 1455 TGGGATATGTTTCTACACAAGCACTGCTTTGATAGATCTGATTCAAAGGACCACGGCGTG 1514
||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||||
Sbjct 1455 TGGGATATGCTTCTACACAAGCACTGCTTTGATCGATCTGATTCAGAGGACAACCGCGTG 1514
Query 1515 GTTACCAGATGACATAAACCATGGAAGAGTTGACAATGTTTACTGGATTTTAGTCATAGG 1574
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1515 GTTACCAGATGACATAAACCATGGAAGAGTTGACAATGTTTACTGGGTTTTAGTTATAGG 1574
Query 1575 AGGAGTCTTGAATCTTGGCTATTTTCTTGTGTGTTCTTGGCTATACAGATACAGAAACCT 1634
|||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct 1575 AGGAGTCTTGAATCTTGGCTATTTTCTTGTGTGTTCTTGGTTTTACAAATACAGAAACCT 1634
Query 1635 CAAGGATGATGATCATAAGCAAGCTGC 1661
|||| ||||||||||| |||||| |||
Sbjct 1635 CAAGAATGATGATCATGAGCAAGATGC 1661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62886994495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5