BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45660.1
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323231 jgi|Araly1|323231|fgenesh1_pm.C_scaffold_5000775 1838 0.0
Ahg347652 jgi|Araly1|347652|fgenesh1_pg.C_scaffold_5001044 1744 0.0
> Ahg323231 jgi|Araly1|323231|fgenesh1_pm.C_scaffold_5000775
Length=1677
Score = 1838 bits (995), Expect = 0.0
Identities = 1466/1692 (87%), Gaps = 37/1692 (2%)
Strand=Plus/Plus
Query 1 ATGTCTGGTTCAGTTTCCCGCGATGCAGAAGCTCTGA-AGTCAGCAGATTCTAGCACCAG 59
||| || |||||||| | ||||||| ||| | ||| | ||||||||||| |||||||
Sbjct 1 ATGGCTAGTTCAGTTACAGGCGATGCGGAAACAGTGATA-TCAGCAGATTCAAGCACCAA 59
Query 60 ACGC-TC--TGGCGGCAGGATCACCTTCCCGTTTATGATAGTAACGTTGTTCGGCCTAAC 116
|||| | ||| || ||||||| || |||||||||||||| |||||||| ||| | ||
Sbjct 60 ACGCAGCGGTGGAGGTTGGATCACTTTTCCGTTTATGATAGTTACGTTGTTAGGCTTGAC 119
Query 117 ATTAGCTACGTTGGGATGGTTACAGAACTTGATTGTCTACCTGATCGAAGAGTACAACAT 176
| ||||| ||| ||| ||||||| |||||||| |||||| |||| || || | |||| |
Sbjct 120 AATAGCTGCGTGGGGTTGGTTACTTAACTTGATCGTCTACTTGATTGAGGAATTCAACGT 179
Query 177 GAAGAGCATCGCAGCTGCGAAGATT-CTCAACATT-TTCAGTGGTTTTACCTTTAT-GTT 233
||||||||||||||| || ||||| || |||||| || ||||||| || || ||| |||
Sbjct 180 GAAGAGCATCGCAGCGGCTCAGATTGCT-AACATTGTT-AGTGGTTGTATCTGTATGGTT 237
Query 234 CCCTGCCATTGG-AGCCATTGCAGCGGATTCTTTCTTCGGAACAATTCCTGTTATCTTGG 292
|| || | ||| |||||||||| | || |||||||| ||||| ||||||||||||| |
Sbjct 238 -CCAGCTA-TGGCAGCCATTGCATCTGACTCTTTCTTTGGAACCATTCCTGTTATCTCAG 295
Query 293 TTTCATCATTCATTTCTC-TAGTGGGCGTAGTTCTGCTGGCTCTAACCACTTTGTTTGAC 351
||||| | |||||||||| || ||||||||| ||||||| |||||||| ||| | |||||
Sbjct 296 TTTCAGCTTTCATTTCTCTTA-TGGGCGTAGCTCTGCTGACTCTAACCGCTTCGCTTGAC 354
Query 352 TCTTTAAGACCCCA-AGCCTGCGAAACAGCATCAAAG-TTATGTCAAG-CCCCTACGAAC 408
||||||||| || | |||||| |||||||| || ||| |||| | || | ||| ||||
Sbjct 355 TCTTTAAGA-CCTAGAGCCTGTGAAACAGCTTC-AAGCCTATG-CCAGTCTCCTTCGAAA 411
Query 409 ATCCAGCTCGGTGTCCTTTACACAGCAATAACTCTAGGCTGTGTGGGAGCAGGTGGG-CT 467
| ||||||||| || |||||||| || |||||||||| || | | ||| |||||||| |
Sbjct 412 ACCCAGCTCGGAGTTCTTTACACGGCCATAACTCTAGCCTCTATAGGAACAGGTGGGAC- 470
Query 468 ACGGTTTACCTTGGCCACCGCTGGTGCGAACCAGTACGAAAAAACTAAAGACCAAGGCAG 527
|||||| || || || || ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 471 ACGGTTCACATTAGCAACTGCTGGTGCGAACCAGTATGAAAAAACTAAAGACCAAGGAAG 530
Query 528 CTTTTTCAACTGGTTTTTCTTCACAT-GGTAT-TTAGCTGCCTCTATAAGTGCAACAGCC 585
|||||||||||||||||||||||| | |||| || || | ||||||||||||| |||
Sbjct 531 CTTTTTCAACTGGTTTTTCTTCAC-TACGTATCTT-GCCGGAGCTATAAGTGCAACCGCC 588
Query 586 ATTGTCTACGCCGAAGAAAACATTAGCTGGAGTTTCGGGTTTGGTCTGTGTGTAGCTGCT 645
||||||||| | ||||| ||||| ||||||| || ||||||||||||| |||||||||
Sbjct 589 ATTGTCTACACTGAAGACAACATCAGCTGGACCTTGGGGTTTGGTCTGTCCGTAGCTGCT 648
Query 646 AATCTGTT-AGGCTTGATAGTTTTCATCTCGGGGAAAAAATTCTACAAGCATGACAAGCC 704
|| || || | | || | ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 649 AACCTCTTCA-GTTTTTTGGTTTTCATCTCGGGGAAAAGATTCTACAAGCACGACAAGCC 707
Query 705 TTTGGGAAGTCCCTTCACAAGTTTACT-TCGTGTCATCTTCGCTGCCATACGTAAAAGAA 763
|||||||||||||||||||||| |||| | | ||||| ||||| || |||| |||||||
Sbjct 708 TTTGGGAAGTCCCTTCACAAGTCTACTAT-GCGTCATTTTCGCCGCGGTACGCAAAAGAA 766
Query 764 AAGCTGTGGTTTCCACCAACGAGAAAGACTACCACAGTGAATCAAAGAAAACGCCCACAA 823
|||||||||||||||||||||| ||||||||||||| |||||| | | || ||||||||
Sbjct 767 AAGCTGTGGTTTCCACCAACGAAAAAGACTACCACAATGAATCTATCACAATGCCCACAA 826
Query 824 AGAGTTTCAGGTTCTTTAACCGCGCAGCATTGAAACAGGATGATGAGGTTAATTCAGACG 883
|||||||||||||||||||||| ||||| |||||||| || || |||||||| ||||||
Sbjct 827 AGAGTTTCAGGTTCTTTAACCGTGCAGCGTTGAAACAAGAAGACGAGGTTAAACCAGACG 886
Query 884 GCACAATTCACAATCAATGGAGACTATGCAGCGTTCAACAAGTAGAAGATTTCAAAGCAG 943
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GCACAATTCGTAATCCCTGGAGACTATGCAGCGTTCAACAAGTAGAAGATTTCAAAGCAG 946
Query 944 TCATAAGAATCATCCCTCTTGTGTTAGCTATATTATTCTTGAGCACTCCAATCGCGATGC 1003
|||||||||| |||||||||| |||||||| | ||||||| |||||||||||||| ||||
Sbjct 947 TCATAAGAATTATCCCTCTTGCGTTAGCTACAATATTCTTAAGCACTCCAATCGCAATGC 1006
Query 1004 AGCTAGGATTAACAGTACTTCAGGGTCTGGTGATGGACCGGAGACTTGGCCCTCA-CTTC 1062
||||| | |||||||| ||||| |||||||||||||||||||| ||||||||| | ||||
Sbjct 1007 AGCTAAGCTTAACAGTTCTTCAAGGTCTGGTGATGGACCGGAGGCTTGGCCCT-AGCTTC 1065
Query 1063 AAGATCCCTGCAGGCTCTCTCCAAGTCATAACACTTCTCTCCACTTGCCTATTTATCATA 1122
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 AAAATCCCTGCAGGCTCTCTCCAAGTCATAACACTTCTCTCCACTTGCCTATTTATCATA 1125
Query 1123 GTCAACGATCGGTTTCTCTACCCATTTTACCAAAAACTAACCGGG-AAGTTCCCCACACC 1181
||||| |||||||||||||| |||||||||||||| ||| |||| ||||||| |||||
Sbjct 1126 GTCAATGATCGGTTTCTCTATCCATTTTACCAAAAGTTAA-CGGGAAAGTTCCTTACACC 1184
Query 1182 GATTCAAAGGGTGGGAATAGGCCACGTTTTCAACATTCTAAGCATGGCTGTGACTGCCAT 1241
| | ||| | || || |||||||| | ||||||||||||||||||||| |||||||||||
Sbjct 1185 GCTCCAACGAGTCGGTATAGGCCATGCTTTCAACATTCTAAGCATGGCCGTGACTGCCAT 1244
Query 1242 AGTTGAAGCAAAGCGATTGAAGATAGTACAGAAAGGTCATTTTCTCGGATCATCATCTGT 1301
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1245 AGTTGAAGCAAAGCGATTGAAGATAGTACAGAAGGGTCATTTTCTCGGATCATCATCCGT 1304
Query 1302 TGCTGACATGTCAGTCTTGTGGTTATTCCCTCCTCTAGTCATAGTAGGAATCGGAGAGGC 1361
|||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||
Sbjct 1305 TGCTGACATGTCAGTCTTGTGGCTCTTCCCACCTCTAGTCATAGTAGGAATTGGAGAGGC 1364
Query 1362 CTTCCATTTCCCAGGGAATGTAGCTCTGTGCTATCAAGAGTTTCCAGAGTCTATGCGAAG 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1365 CTTCCATTTCCCAGGGAATGTAGCTCTGTGCTATCAAGAGTTTCCAGAGTCTATGAGAAG 1424
Query 1422 TACTGCGACATCAATAACCTCGGTGTTGATTGGGATATGTTTCTACACAAGCACTGCTTT 1481
|| || ||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1425 CACCGCAACATCGATTACCTCGGTGGTGATTGGGATATGTTTCTACACAAGCACTGCTTT 1484
Query 1482 GATCGACCTGATTCAAAAGACCACTGCATGGTTACCAGATGATATTAACCATGGAAGAGT 1541
||| || |||||||| | |||||| || |||||||||||||| |||||||| ||||||||
Sbjct 1485 GATTGATCTGATTCAGAGGACCACCGCGTGGTTACCAGATGACATTAACCACGGAAGAGT 1544
Query 1542 TGACAATGTTTACTGGATTTTAGTCATAGGAGGAGTCTTGAATCTTGGCTATTTCCTTGT 1601
|||||||||||||||| ||||||| || |||||||||||||||||||||||||| |||||
Sbjct 1545 TGACAATGTTTACTGGGTTTTAGTAATTGGAGGAGTCTTGAATCTTGGCTATTTTCTTGT 1604
Query 1602 GTGTTCTT-GGTTTTATAAATACAGAAACCTCGAGAATGCTGATCATGAACAAGATGCAA 1660
|||||||| ||||| | | ||||||||||||| || ||| ||||||||| ||| |||||
Sbjct 1605 GTGTTCTTTGGTTT-ACAGATACAGAAACCTCAAGGATGATGATCATGAGCAATCTGCAA 1663
Query 1661 ATGTCTCTCACT 1672
||||||||||||
Sbjct 1664 ATGTCTCTCACT 1675
> Ahg347652 jgi|Araly1|347652|fgenesh1_pg.C_scaffold_5001044
Length=1680
Score = 1744 bits (944), Expect = 0.0
Identities = 1193/1309 (91%), Gaps = 34/1309 (3%)
Strand=Plus/Plus
Query 359 GACCCCAAGCCTGCGAAACAGCATCAAAGTTATGTCAAGCCCCTACGAACATCCAGCTCG 418
||||||||||||||| | | || ||| |||| |||||||||||||||||||||||||
Sbjct 378 GACCCCAAGCCTGCG-TA-A-CA--AAA--TATGCCAAGCCCCTACGAACATCCAGCTCG 430
Query 419 GTGTCCTTTACACAGCAATAACTCTAGGCTGTGTGGGAGCAGGTGGGCTACGGTTTACCT 478
||||||||||||| ||||||||| |||||| |||||||||||||||||| ||||| ||||
Sbjct 431 GTGTCCTTTACACGGCAATAACTTTAGGCTCTGTGGGAGCAGGTGGGCTGCGGTTCACCT 490
Query 479 TGGCCACCGCTGGTGCGAACCAGTACGAAAAAACTAAAGACCAAGGCAGCTTTTTCAACT 538
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 491 TGGCCACCGCTGGTGCGAACCAGTATGAAAAAACTGAAGACCAAGGCAGCTTTTTCAACT 550
Query 539 GGTTTTTCTTCACATGGTATTTAGCTGCCTCTATAAGTGCAACAGCCATTGTCTACGCCG 598
| |||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 551 GTTTTTTCTTCACATGGTATCTAGCTGCCTCTATAAGTGTAACAGCCATTGTCTACACCG 610
Query 599 AAGAAAACATTAGCTGGAGTTTCGGGTTTGGTCTGTGTGTAGCTGCTAATCTGTTAGGCT 658
|||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 611 AAGAAAACATCAGCTGGAGTTTTGGGTTTGGTTTATGTGTAGCTGCTAATCTGTTAGGCT 670
Query 659 TGATAGTTTTCATCTCGGGGAAAAAATTCT---A-CA--A--GCATGACAAGCCTTTGGG 710
|||| ||||||||||||||||||| ||||| | || | ||||||||||||||||||
Sbjct 671 TGATGGTTTTCATCTCGGGGAAAAGATTCTACAAGCATGAGTGCATGACAAGCCTTTGGG 730
Query 711 AAGTCCCTTCACAAGTTTACTTCGTGTCATCTTCGCTGCCA-TACGTAAAAGAAAAGCTG 769
|||||||||||||||||||||||| |||||||| ||| || ||| ||||||||||||||
Sbjct 731 AAGTCCCTTCACAAGTTTACTTCGCGTCATCTTTTCTG-CATTACTTAAAAGAAAAGCTG 789
Query 770 TGGTTTCCACCAACGAGAAAGACTACCACAGTGAATCAAAGAAAACGCCCACAAAGAGTT 829
||||||||||||||||||||||||||||||||||||||||||| |||| || || ||
Sbjct 790 TGGTTTCCACCAACGAGAAAGACTACCACAGTGAATCAAAGAAGCCGCCAAC-AA-AG-- 845
Query 830 TCAGGTTCTTTAACCGCGCAGCATTGAAACAGGATGATGAGGTTAATTCAGACGGCACAA 889
| | ||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 846 --A-G---TTT-------CAGCATTGAAACAGGATGATGAGGTTAATGCAGACAGCACAA 892
Query 890 TTCACAATCAATGGAGACTATGCAGCGTTCAACAAGTAGAAGATTTCAAAGCAGTCATAA 949
||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 893 TTCGCAATCAATGGAGACTATGCAGCGTTAAACAAGTGGAAGATTTCAAAGCAGTCATAA 952
Query 950 GAATCATCCCTCTTGTGTTAGCTATATTATTCTTGAGCACTCCAATCGCGATGCAGCTAG 1009
|||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 953 GAATAATCCCTCTTGTGTTAGCCATAATATTCTTGAGCACTCCAATAGCGATGCAGCTAG 1012
Query 1010 GATTAACAGTACTTCAGGGTCTGGTGATGGACCGGAGACTTGGCCCTCACTTCAAGATCC 1069
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1013 GCTTAACAGTACTTCAAGGTCTGGTGATGGACCGGAGACTTGGCCCTCACTTCAAAATCC 1072
Query 1070 CTGCAGGCTCTCTCCAAGTCATAACACTTCTCTCCACTTGCCTATTTATCATAGTCAACG 1129
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1073 CTGCAGGCTCTCTCCAAGTCATAACACTTCTCTCCACTTGCCTGTTTCTCATAGTCAACG 1132
Query 1130 ATCGGTTTCTCTACCCATTTTACCAAAAACTAACCGGGAAGTTCCCCACACCGATTCAAA 1189
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1133 ATCGGTTTCTCTACCCATTTTACCAAAAACTAACCGGAAAGTTCCCCACACCGATACAAA 1192
Query 1190 GGGTGGGAATAGGCCACGTTTTCAACATTCTAAGCATGGCTGTGACTGCCATAGTTGAAG 1249
|||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1193 GGGTGGGAATAGGCCATGTTTTCAACATTATAAGCATGGCCATGACTGCCATAGTTGAAG 1252
Query 1250 CAAAGCGATTGAAGATAGTACAGAAAGGTCATTTTCTCGGATCATCATCTGTTGCTGACA 1309
|||| |||| |||||||||||||| | | || |||| | ||||||||| ||||||||||
Sbjct 1253 CAAAAAGATTAAAGATAGTACAGAACGTTAATCTTCTTGAATCATCATCCGTTGCTGACA 1312
Query 1310 TGTCAGTCTTGTGGTTATTCCCTCCTCTAGTCATAGTAGGAATCGGAGAGGCCTTCCATT 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 TGTCAGTCTTGTGGTTATTCCCTCCTCTAGTCATAGTAGGAATCGGAGAGGCCTTCCATT 1372
Query 1370 TCCCAGGGAATGTAGCTCTGTGCTATCAAGAGTTTCCAGAGTCTATGCGAAGTACTGCGA 1429
||||||||||||||||||| ||||||||||| ||||||||||||||| |||| | || |
Sbjct 1373 TCCCAGGGAATGTAGCTCTATGCTATCAAGAATTTCCAGAGTCTATGAGAAGCCCCGCAA 1432
Query 1430 CATCAATAACCTCGGTGTTGATTGGGATATGTTTCTACACAAGCACTGCTTTGATCGACC 1489
|||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1433 CATCGATCACCTCGGTGGTGATTGGGATATGCTTCTACACAAGCACTGCTTTGATCGATC 1492
Query 1490 TGATTCAAAAGACCACTGCATGGTTACCAGATGATATTAACCATGGAAGAGTTGACAATG 1549
||||||| | ||| || || |||||||||||||| || ||||||||||||||||||||||
Sbjct 1493 TGATTCAGAGGACAACCGCGTGGTTACCAGATGACATAAACCATGGAAGAGTTGACAATG 1552
Query 1550 TTTACTGGATTTTAGTCATAGGAGGAGTCTTGAATCTTGGCTATTTCCTTGTGTGTTCTT 1609
|||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1553 TTTACTGGGTTTTAGTTATAGGAGGAGTCTTGAATCTTGGCTATTTTCTTGTGTGTTCTT 1612
Query 1610 GGTTTTATAAATACAGAAACCTCGAGAATGCTGATCATGAACAAGATGC 1658
||||||| ||||||||||||||| |||||| ||||||||| ||||||||
Sbjct 1613 GGTTTTACAAATACAGAAACCTCAAGAATGATGATCATGAGCAAGATGC 1661
Score = 121 bits (65), Expect = 2e-26
Identities = 89/101 (88%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGGTTCAGTTTCCCGCGATGCAGAAGCTCTGAAGTCAGCAGATTCTAGCACCAGA 60
||| |||||| ||||||| ||||||||||| | || |||||||||||||| ||||||
Sbjct 1 ATGGCTGGTTTTGTTTCCCATGATGCAGAAGCACCGATTTCAGCAGATTCTAGTACCAGA 60
Query 61 CGCTCTGGCGGCAGGATCACCTTCCCGTTTATGATAGTAAC 101
||||||||||||||||||||||| ||||||||||||| |||
Sbjct 61 CGCTCTGGCGGCAGGATCACCTTTCCGTTTATGATAGCAAC 101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5