BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45670.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897382 jgi|Araly1|897382|Al_scaffold_0005_1348 1279 0.0
Ahg937268 jgi|Araly1|937268|scaffold_501459.1 1267 0.0
> Ahg897382 jgi|Araly1|897382|Al_scaffold_0005_1348
Length=1182
Score = 1279 bits (692), Expect = 0.0
Identities = 993/1138 (87%), Gaps = 22/1138 (2%)
Strand=Plus/Plus
Query 17 AGATTTCTGATTCATCGTCAAGCAACAACTCGATGATCCCTCCTCTTCCTCAAAACCCTA 76
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 53 AGATTTCTGATTCATCGTCAAGCAACAACTCCATGATCCCTCCTCTTCCTCAAAACCCTA 112
Query 77 TTTTGACTGTGAAACTCTCTCCGATCATTCTCCATGTACGACGTTGCTCGAAGAACATTA 136
|||| ||||| ||||||||||||||||| |||||| |||| ||||| |||| ||| ||||
Sbjct 113 TTTTCACTGTAAAACTCTCTCCGATCATGCTCCATCTACGTCGTTGTTCGAGGAAGATTA 172
Query 137 AAAAGAAGAAACGTACACGGACGCCTTT------gaagaagaagaagaagaGTATTAGTA 190
|||||||||||| ||||| | ||| ||| ||||||||||||||||||||||||||
Sbjct 173 AAAAGAAGAAACTTACACAGCCGCTTTTGAAGAAGAAGAAGAAGAAGAAGAGTATTAGTA 232
Query 191 GCAGTGTCGAATCTATAATCGGAGTCTCATTCAAATCCGCC-TCTCAGAAACATTCCACC 249
|||||||| ||| | ||| | ||| |||||||| ||||| | |||||||| |||||||
Sbjct 233 GCAGTGTCAAATTTCTAAGCAGAGGATCATTCAACGCCGCCGT-TCAGAAACGTTCCACC 291
Query 250 ACCGTAACTCGCGACGGAGGAGTTAAAAAGATTTCCTCTTGGGTGAAATCTAGGTTACTT 309
|||||||| ||| |||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 292 ACCGTAACCCGCAACGGAGGAGTGAGAAAGGTTTCCTCTTGGGTGAAATCTAGGTTACTT 351
Query 310 GGAGAAGGGGCTTACGGTT-GTGTTTACCTAGCGACAAGTAAAGATGACATATACAAAAC 368
|| ||||||| ||||| || | |||||||||||||| |||||||| |||| |||||||||
Sbjct 352 GGGGAAGGGGGTTACGCTTCG-GTTTACCTAGCGACGAGTAAAGACGACAGATACAAAAC 410
Query 369 AGAGAGAGCGATCAAAAGTGCTGATG-TTTTAAAGGCTTGGAGTCTTATGCACGAAGGAA 427
||||||||| ||||||||||| || | ||| |||||||| ||||||||||||||||||||
Sbjct 411 AGAGAGAGCCATCAAAAGTGCAGA-GCTTTCAAAGGCTTCGAGTCTTATGCACGAAGGAA 469
Query 428 GGATCTTAAGAA-GTTTGCAATCTCCGTTCGTGATTCGTTGTTACGGCCATGAAATTGCA 486
||||| ||| || |||| |||||||||||||||||| |||| |||||| |||| ||||||
Sbjct 470 GGATCCTAA-AACGTTTACAATCTCCGTTCGTGATTAGTTGCTACGGCGATGAGATTGCA 528
Query 487 CGAGAAGGGACTGGTCATCAATATAA-TTTGATTCTCGAGTACTGCT-CTGGACAGTGTC 544
|||||||||||||||||| ||||||| || | |||||||||| || | ||||||||||||
Sbjct 529 CGAGAAGGGACTGGTCATGAATATAACTTAG-TTCTCGAGTATTG-TGCTGGACAGTGTC 586
Query 545 TTGCGGATATGATCGAAGATAATCAAGGAGGGATACCGGAGTTTGATGTCAAGCAGTTCG 604
||| |||| |||||||||||||||| |||||| | ||||||||||||| |||||||||
Sbjct 587 TTGTGGATTTGATCGAAGATAATCACGGAGGGTTGTCGGAGTTTGATGTGAAGCAGTTCT 646
Query 605 CTATAGATGTTCTGTCTGGTCTCAGTTACATTCACCGCAGAAACATTATTCATTGTGAAA 664
||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct 647 CTAGAGATGTTCTGTCTGGTCTCAGTTACATTCACAGCAGAAACATTGTTCATTGTGACA 706
Query 665 TTAAACCGGACAATCTCTTACTCAGCCCTGTTGATCACCGGTTTAGGTCTAATGGGTTTT 724
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 707 TTAAACCAGACAATCTCTTACTCAGCCCTGTTGATCACCGGTTTAGGTTTAATGGGTATC 766
Query 725 TGAC-AAAGATTGCAGATTTCGGTTTATCAATGGAGAAAGGTTCTAAAGAGTATGGAAAC 783
||| ||| ||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 767 TGATTAAA-ATTGCAGATTTTGGTTTATCAATGGAGAAAGGTTCGGTGGAGTATGGGAAT 825
Query 784 GGACGTGGGCACATGAGAGGGACAACTAGGTACATGGCTCCGGAGTTAATAGGCGGTGGG 843
||| |||| || |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 826 GGATGTGGTCATATGAGAGGGACAACTAGGTACATGGCTCCGGAATTAATAGGCCATGGG 885
Query 844 CTTCTGGATTTTGCTGTTGACATTTGCGCGTTTGGATGTTCTGTTTTGGAGATGCTAACC 903
|| | ||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 886 GTTGTTGATTTTGGTGTTGACATTTGGGCGTTTGGATGTTCTGTTTTGGAGATGCTAACC 945
Query 904 GGGAAAAGGGTTTGGGGAGAATATGGTGATTTGGCTCATGATGATTGGGTTGATTTGATC 963
||| ||| |||||||||||| |||||||||||| | ||||||||||||| | | |||
Sbjct 946 GGGCAAATGGTTTGGGGAGAGCATGGTGATTTGGTTTTTGATGATTGGGTTAAGCTCATC 1005
Query 964 GGTCACAGTGATCTCACTCCTCAAATCTCGATTCGGTTATCTGCAGAAGCTCAAGACTTT 1023
||||||| |||||||| ||||| || |||| ||||||||| | ||||||||| || |||
Sbjct 1006 GGTCACACTGATCTCATTCCTCGTATATCGAGTCGGTTATCGGAAGAAGCTCAGGATTTT 1065
Query 1024 CTGATGAGGTG-TTTGGTTAAGGAGCCTGGTTCGAGGTGGACCATCGGTGAACTCGTGGA 1082
||| ||| || |||| |||||||||||||||| || |||| ||| ||||||| || |
Sbjct 1066 TTGAGGAGATGCTTTG-TTAAGGAGCCTGGTTCAAGATGGAGGATCAATGAACTCATGAA 1124
Query 1083 CCATCCGTTTCTCTGTTCAGATGAAGAGTTTTCTCACAATGGATTTGTTTATGATTGA 1140
|||||||||||||| ||| |||| || |||||||| || || ||||||||||| |||
Sbjct 1125 CCATCCGTTTCTCTATTCGGATGTGGATTTTTCTCATAACGGTTTTGTTTATGACTGA 1182
> Ahg937268 jgi|Araly1|937268|scaffold_501459.1
Length=1298
Score = 1267 bits (686), Expect = 0.0
Identities = 995/1143 (87%), Gaps = 25/1143 (2%)
Strand=Plus/Plus
Query 15 TGAGATTTCTGATTCATCGTCAAGCAACAACTCGATGATCCCTCCTCTTCCTCAAAACCC 74
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 143 TGAGATTTCTGATTCATCGTCAAGCAACAACTCCATGATCCCTCCTCTTCCTCAAAACCC 202
Query 75 TATTTTGACTGTGAAACTCTCTCCGATCATTCTCCATGTACGACGTTGCTCGAAGAACAT 134
|||||| ||||| ||||||||||||||||| |||||| |||| ||||| |||| ||| ||
Sbjct 203 TATTTTCACTGTAAAACTCTCTCCGATCATGCTCCATCTACGTCGTTGTTCGAGGAAGAT 262
Query 135 TAAAAAGAAGAAACGTACACGGACGCCTTT---------gaagaagaagaagaagaGTAT 185
|||||||||||||| ||||| | ||| ||| |||||||||||||||||||||
Sbjct 263 TAAAAAGAAGAAACTTACACAGCCGCTTTTGAAGAAGAAGAAGAAGAAGAAGAAGAGTAT 322
Query 186 TAGTAGCAGTGTCGAATCTATAATCGGAGTCTCATTCAAATCCGCC-TCTCAGAAACATT 244
||||||||||||| ||| | ||| | ||| |||||||| ||||| | |||||||| ||
Sbjct 323 TAGTAGCAGTGTCAAATTTCTAAGCAGAGGATCATTCAACGCCGCCGT-TCAGAAACGTT 381
Query 245 CCACCACCGTAACTCGCGACGGAGGAGTTAAAAAGATTTCCTCTTGGGTGAAATCTAGGT 304
||||||||||||| ||| |||||||||| | |||| ||||||||||||||||||||||||
Sbjct 382 CCACCACCGTAACCCGCAACGGAGGAGTGAGAAAGGTTTCCTCTTGGGTGAAATCTAGGT 441
Query 305 TACTTGGAGAAGGGGCTTACGGTT-GTGTTTACCTAGCGACAAGTAAAGATGACATATAC 363
||||||| ||||||| ||||| || | |||||||||||||| |||||||| |||| ||||
Sbjct 442 TACTTGGGGAAGGGGGTTACGCTTCG-GTTTACCTAGCGACGAGTAAAGACGACAGATAC 500
Query 364 AAAACAGAGAGAGCGATCAAAAGTGCTGATG-TTTTAAAGGCTTGGAGTCTTATGCACGA 422
|||||||||||||| ||||||||||| || | ||| |||||||| |||||||||||||||
Sbjct 501 AAAACAGAGAGAGCCATCAAAAGTGCAGA-GCTTTCAAAGGCTTCGAGTCTTATGCACGA 559
Query 423 AGGAAGGATCTTAAGAA-GTTTGCAATCTCCGTTCGTGATTCGTTGTTACGGCCATGAAA 481
|||||||||| ||| || |||| |||||||||||||||||| |||| |||||| |||| |
Sbjct 560 AGGAAGGATCCTAA-AACGTTTACAATCTCCGTTCGTGATTAGTTGCTACGGCGATGAGA 618
Query 482 TTGCACGAGAAGGGACTGGTCATCAATATAA-TTTGATTCTCGAGTACTGCT-CTGGACA 539
||||||||||||||||||||||| ||||||| || | |||||||||| || | |||||||
Sbjct 619 TTGCACGAGAAGGGACTGGTCATGAATATAACTTAG-TTCTCGAGTATTG-TGCTGGACA 676
Query 540 GTGTCTTGCGGATATGATCGAAGATAATCAAGGAGGGATACCGGAGTTTGATGTCAAGCA 599
|||||||| |||| |||||||||||||||| |||||| | ||||||||||||| |||||
Sbjct 677 GTGTCTTGTGGATTTGATCGAAGATAATCACGGAGGGTTGTCGGAGTTTGATGTGAAGCA 736
Query 600 GTTCGCTATAGATGTTCTGTCTGGTCTCAGTTACATTCACCGCAGAAACATTATTCATTG 659
|||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 737 GTTCTCTAGAGATGTTCTGTCTGGTCTCAGTTACATTCACAGCAGAAACATTGTTCATTG 796
Query 660 TGAAATTAAACCGGACAATCTCTTACTCAGCCCTGTTGATCACCGGTTTAGGTCTAATGG 719
||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 797 TGACATTAAACCAGACAATCTCTTACTCAGCCCTGTTGATCACCGGTTTAGGTTTAATGG 856
Query 720 GTTTTTGAC-AAAGATTGCAGATTTCGGTTTATCAATGGAGAAAGGTTCTAAAGAGTATG 778
|| | ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 857 GTATCTGATTAAA-ATTGCAGATTTTGGTTTATCAATGGAGAAAGGTTCGGTGGAGTATG 915
Query 779 GAAACGGACGTGGGCACATGAGAGGGACAACTAGGTACATGGCTCCGGAGTTAATAGGCG 838
| || ||| |||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 916 GGAATGGATGTGGTCATATGAGAGGGACAACTAGGTACATGGCTCCGGAATTAATAGGCC 975
Query 839 GTGGGCTTCTGGATTTTGCTGTTGACATTTGCGCGTTTGGATGTTCTGTTTTGGAGATGC 898
|||| || | ||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 976 ATGGGGTTGTTGATTTTGGTGTTGACATTTGGGCGTTTGGATGTTCTGTTTTGGAGATGC 1035
Query 899 TAACCGGGAAAAGGGTTTGGGGAGAATATGGTGATTTGGCTCATGATGATTGGGTTGATT 958
|||||||| ||| |||||||||||| |||||||||||| | ||||||||||||| |
Sbjct 1036 TAACCGGGCAAATGGTTTGGGGAGAGCATGGTGATTTGGTTTTTGATGATTGGGTTAAGC 1095
Query 959 TGATCGGTCACAGTGATCTCACTCCTCAAATCTCGATTCGGTTATCTGCAGAAGCTCAAG 1018
| |||||||||| |||||||| ||||| || |||| ||||||||| | ||||||||| |
Sbjct 1096 TCATCGGTCACACTGATCTCATTCCTCGTATATCGAGTCGGTTATCGGAAGAAGCTCAGG 1155
Query 1019 ACTTTCTGATGAGGTG-TTTGGTTAAGGAGCCTGGTTCGAGGTGGACCATCGGTGAACTC 1077
| ||| ||| ||| || |||| |||||||||||||||| || |||| ||| |||||||
Sbjct 1156 ATTTTTTGAGGAGATGCTTTG-TTAAGGAGCCTGGTTCAAGATGGAGGATCAATGAACTC 1214
Query 1078 GTGGACCATCCGTTTCTCTGTTCAGATGAAGAGTTTTCTCACAATGGATTTGTTTATGAT 1137
|| ||||||||||||||| ||| |||| || |||||||| || || |||||||||||
Sbjct 1215 ATGAACCATCCGTTTCTCTATTCGGATGTGGATTTTTCTCATAACGGTTTTGTTTATGAC 1274
Query 1138 TGA 1140
|||
Sbjct 1275 TGA 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5