BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45670.1 Length=1140 Score E Sequences producing significant alignments: (Bits) Value Ahg897382 jgi|Araly1|897382|Al_scaffold_0005_1348 1279 0.0 Ahg937268 jgi|Araly1|937268|scaffold_501459.1 1267 0.0 > Ahg897382 jgi|Araly1|897382|Al_scaffold_0005_1348 Length=1182 Score = 1279 bits (692), Expect = 0.0 Identities = 993/1138 (87%), Gaps = 22/1138 (2%) Strand=Plus/Plus Query 17 AGATTTCTGATTCATCGTCAAGCAACAACTCGATGATCCCTCCTCTTCCTCAAAACCCTA 76 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 53 AGATTTCTGATTCATCGTCAAGCAACAACTCCATGATCCCTCCTCTTCCTCAAAACCCTA 112 Query 77 TTTTGACTGTGAAACTCTCTCCGATCATTCTCCATGTACGACGTTGCTCGAAGAACATTA 136 |||| ||||| ||||||||||||||||| |||||| |||| ||||| |||| ||| |||| Sbjct 113 TTTTCACTGTAAAACTCTCTCCGATCATGCTCCATCTACGTCGTTGTTCGAGGAAGATTA 172 Query 137 AAAAGAAGAAACGTACACGGACGCCTTT------gaagaagaagaagaagaGTATTAGTA 190 |||||||||||| ||||| | ||| ||| |||||||||||||||||||||||||| Sbjct 173 AAAAGAAGAAACTTACACAGCCGCTTTTGAAGAAGAAGAAGAAGAAGAAGAGTATTAGTA 232 Query 191 GCAGTGTCGAATCTATAATCGGAGTCTCATTCAAATCCGCC-TCTCAGAAACATTCCACC 249 |||||||| ||| | ||| | ||| |||||||| ||||| | |||||||| ||||||| Sbjct 233 GCAGTGTCAAATTTCTAAGCAGAGGATCATTCAACGCCGCCGT-TCAGAAACGTTCCACC 291 Query 250 ACCGTAACTCGCGACGGAGGAGTTAAAAAGATTTCCTCTTGGGTGAAATCTAGGTTACTT 309 |||||||| ||| |||||||||| | |||| ||||||||||||||||||||||||||||| Sbjct 292 ACCGTAACCCGCAACGGAGGAGTGAGAAAGGTTTCCTCTTGGGTGAAATCTAGGTTACTT 351 Query 310 GGAGAAGGGGCTTACGGTT-GTGTTTACCTAGCGACAAGTAAAGATGACATATACAAAAC 368 || ||||||| ||||| || | |||||||||||||| |||||||| |||| ||||||||| Sbjct 352 GGGGAAGGGGGTTACGCTTCG-GTTTACCTAGCGACGAGTAAAGACGACAGATACAAAAC 410 Query 369 AGAGAGAGCGATCAAAAGTGCTGATG-TTTTAAAGGCTTGGAGTCTTATGCACGAAGGAA 427 ||||||||| ||||||||||| || | ||| |||||||| |||||||||||||||||||| Sbjct 411 AGAGAGAGCCATCAAAAGTGCAGA-GCTTTCAAAGGCTTCGAGTCTTATGCACGAAGGAA 469 Query 428 GGATCTTAAGAA-GTTTGCAATCTCCGTTCGTGATTCGTTGTTACGGCCATGAAATTGCA 486 ||||| ||| || |||| |||||||||||||||||| |||| |||||| |||| |||||| Sbjct 470 GGATCCTAA-AACGTTTACAATCTCCGTTCGTGATTAGTTGCTACGGCGATGAGATTGCA 528 Query 487 CGAGAAGGGACTGGTCATCAATATAA-TTTGATTCTCGAGTACTGCT-CTGGACAGTGTC 544 |||||||||||||||||| ||||||| || | |||||||||| || | |||||||||||| Sbjct 529 CGAGAAGGGACTGGTCATGAATATAACTTAG-TTCTCGAGTATTG-TGCTGGACAGTGTC 586 Query 545 TTGCGGATATGATCGAAGATAATCAAGGAGGGATACCGGAGTTTGATGTCAAGCAGTTCG 604 ||| |||| |||||||||||||||| |||||| | ||||||||||||| ||||||||| Sbjct 587 TTGTGGATTTGATCGAAGATAATCACGGAGGGTTGTCGGAGTTTGATGTGAAGCAGTTCT 646 Query 605 CTATAGATGTTCTGTCTGGTCTCAGTTACATTCACCGCAGAAACATTATTCATTGTGAAA 664 ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | Sbjct 647 CTAGAGATGTTCTGTCTGGTCTCAGTTACATTCACAGCAGAAACATTGTTCATTGTGACA 706 Query 665 TTAAACCGGACAATCTCTTACTCAGCCCTGTTGATCACCGGTTTAGGTCTAATGGGTTTT 724 ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 707 TTAAACCAGACAATCTCTTACTCAGCCCTGTTGATCACCGGTTTAGGTTTAATGGGTATC 766 Query 725 TGAC-AAAGATTGCAGATTTCGGTTTATCAATGGAGAAAGGTTCTAAAGAGTATGGAAAC 783 ||| ||| ||||||||||| ||||||||||||||||||||||| |||||||| || Sbjct 767 TGATTAAA-ATTGCAGATTTTGGTTTATCAATGGAGAAAGGTTCGGTGGAGTATGGGAAT 825 Query 784 GGACGTGGGCACATGAGAGGGACAACTAGGTACATGGCTCCGGAGTTAATAGGCGGTGGG 843 ||| |||| || |||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 826 GGATGTGGTCATATGAGAGGGACAACTAGGTACATGGCTCCGGAATTAATAGGCCATGGG 885 Query 844 CTTCTGGATTTTGCTGTTGACATTTGCGCGTTTGGATGTTCTGTTTTGGAGATGCTAACC 903 || | ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 886 GTTGTTGATTTTGGTGTTGACATTTGGGCGTTTGGATGTTCTGTTTTGGAGATGCTAACC 945 Query 904 GGGAAAAGGGTTTGGGGAGAATATGGTGATTTGGCTCATGATGATTGGGTTGATTTGATC 963 ||| ||| |||||||||||| |||||||||||| | ||||||||||||| | | ||| Sbjct 946 GGGCAAATGGTTTGGGGAGAGCATGGTGATTTGGTTTTTGATGATTGGGTTAAGCTCATC 1005 Query 964 GGTCACAGTGATCTCACTCCTCAAATCTCGATTCGGTTATCTGCAGAAGCTCAAGACTTT 1023 ||||||| |||||||| ||||| || |||| ||||||||| | ||||||||| || ||| Sbjct 1006 GGTCACACTGATCTCATTCCTCGTATATCGAGTCGGTTATCGGAAGAAGCTCAGGATTTT 1065 Query 1024 CTGATGAGGTG-TTTGGTTAAGGAGCCTGGTTCGAGGTGGACCATCGGTGAACTCGTGGA 1082 ||| ||| || |||| |||||||||||||||| || |||| ||| ||||||| || | Sbjct 1066 TTGAGGAGATGCTTTG-TTAAGGAGCCTGGTTCAAGATGGAGGATCAATGAACTCATGAA 1124 Query 1083 CCATCCGTTTCTCTGTTCAGATGAAGAGTTTTCTCACAATGGATTTGTTTATGATTGA 1140 |||||||||||||| ||| |||| || |||||||| || || ||||||||||| ||| Sbjct 1125 CCATCCGTTTCTCTATTCGGATGTGGATTTTTCTCATAACGGTTTTGTTTATGACTGA 1182 > Ahg937268 jgi|Araly1|937268|scaffold_501459.1 Length=1298 Score = 1267 bits (686), Expect = 0.0 Identities = 995/1143 (87%), Gaps = 25/1143 (2%) Strand=Plus/Plus Query 15 TGAGATTTCTGATTCATCGTCAAGCAACAACTCGATGATCCCTCCTCTTCCTCAAAACCC 74 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 143 TGAGATTTCTGATTCATCGTCAAGCAACAACTCCATGATCCCTCCTCTTCCTCAAAACCC 202 Query 75 TATTTTGACTGTGAAACTCTCTCCGATCATTCTCCATGTACGACGTTGCTCGAAGAACAT 134 |||||| ||||| ||||||||||||||||| |||||| |||| ||||| |||| ||| || Sbjct 203 TATTTTCACTGTAAAACTCTCTCCGATCATGCTCCATCTACGTCGTTGTTCGAGGAAGAT 262 Query 135 TAAAAAGAAGAAACGTACACGGACGCCTTT---------gaagaagaagaagaagaGTAT 185 |||||||||||||| ||||| | ||| ||| ||||||||||||||||||||| Sbjct 263 TAAAAAGAAGAAACTTACACAGCCGCTTTTGAAGAAGAAGAAGAAGAAGAAGAAGAGTAT 322 Query 186 TAGTAGCAGTGTCGAATCTATAATCGGAGTCTCATTCAAATCCGCC-TCTCAGAAACATT 244 ||||||||||||| ||| | ||| | ||| |||||||| ||||| | |||||||| || Sbjct 323 TAGTAGCAGTGTCAAATTTCTAAGCAGAGGATCATTCAACGCCGCCGT-TCAGAAACGTT 381 Query 245 CCACCACCGTAACTCGCGACGGAGGAGTTAAAAAGATTTCCTCTTGGGTGAAATCTAGGT 304 ||||||||||||| ||| |||||||||| | |||| |||||||||||||||||||||||| Sbjct 382 CCACCACCGTAACCCGCAACGGAGGAGTGAGAAAGGTTTCCTCTTGGGTGAAATCTAGGT 441 Query 305 TACTTGGAGAAGGGGCTTACGGTT-GTGTTTACCTAGCGACAAGTAAAGATGACATATAC 363 ||||||| ||||||| ||||| || | |||||||||||||| |||||||| |||| |||| Sbjct 442 TACTTGGGGAAGGGGGTTACGCTTCG-GTTTACCTAGCGACGAGTAAAGACGACAGATAC 500 Query 364 AAAACAGAGAGAGCGATCAAAAGTGCTGATG-TTTTAAAGGCTTGGAGTCTTATGCACGA 422 |||||||||||||| ||||||||||| || | ||| |||||||| ||||||||||||||| Sbjct 501 AAAACAGAGAGAGCCATCAAAAGTGCAGA-GCTTTCAAAGGCTTCGAGTCTTATGCACGA 559 Query 423 AGGAAGGATCTTAAGAA-GTTTGCAATCTCCGTTCGTGATTCGTTGTTACGGCCATGAAA 481 |||||||||| ||| || |||| |||||||||||||||||| |||| |||||| |||| | Sbjct 560 AGGAAGGATCCTAA-AACGTTTACAATCTCCGTTCGTGATTAGTTGCTACGGCGATGAGA 618 Query 482 TTGCACGAGAAGGGACTGGTCATCAATATAA-TTTGATTCTCGAGTACTGCT-CTGGACA 539 ||||||||||||||||||||||| ||||||| || | |||||||||| || | ||||||| Sbjct 619 TTGCACGAGAAGGGACTGGTCATGAATATAACTTAG-TTCTCGAGTATTG-TGCTGGACA 676 Query 540 GTGTCTTGCGGATATGATCGAAGATAATCAAGGAGGGATACCGGAGTTTGATGTCAAGCA 599 |||||||| |||| |||||||||||||||| |||||| | ||||||||||||| ||||| Sbjct 677 GTGTCTTGTGGATTTGATCGAAGATAATCACGGAGGGTTGTCGGAGTTTGATGTGAAGCA 736 Query 600 GTTCGCTATAGATGTTCTGTCTGGTCTCAGTTACATTCACCGCAGAAACATTATTCATTG 659 |||| ||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 737 GTTCTCTAGAGATGTTCTGTCTGGTCTCAGTTACATTCACAGCAGAAACATTGTTCATTG 796 Query 660 TGAAATTAAACCGGACAATCTCTTACTCAGCCCTGTTGATCACCGGTTTAGGTCTAATGG 719 ||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 797 TGACATTAAACCAGACAATCTCTTACTCAGCCCTGTTGATCACCGGTTTAGGTTTAATGG 856 Query 720 GTTTTTGAC-AAAGATTGCAGATTTCGGTTTATCAATGGAGAAAGGTTCTAAAGAGTATG 778 || | ||| ||| ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 857 GTATCTGATTAAA-ATTGCAGATTTTGGTTTATCAATGGAGAAAGGTTCGGTGGAGTATG 915 Query 779 GAAACGGACGTGGGCACATGAGAGGGACAACTAGGTACATGGCTCCGGAGTTAATAGGCG 838 | || ||| |||| || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 916 GGAATGGATGTGGTCATATGAGAGGGACAACTAGGTACATGGCTCCGGAATTAATAGGCC 975 Query 839 GTGGGCTTCTGGATTTTGCTGTTGACATTTGCGCGTTTGGATGTTCTGTTTTGGAGATGC 898 |||| || | ||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 976 ATGGGGTTGTTGATTTTGGTGTTGACATTTGGGCGTTTGGATGTTCTGTTTTGGAGATGC 1035 Query 899 TAACCGGGAAAAGGGTTTGGGGAGAATATGGTGATTTGGCTCATGATGATTGGGTTGATT 958 |||||||| ||| |||||||||||| |||||||||||| | ||||||||||||| | Sbjct 1036 TAACCGGGCAAATGGTTTGGGGAGAGCATGGTGATTTGGTTTTTGATGATTGGGTTAAGC 1095 Query 959 TGATCGGTCACAGTGATCTCACTCCTCAAATCTCGATTCGGTTATCTGCAGAAGCTCAAG 1018 | |||||||||| |||||||| ||||| || |||| ||||||||| | ||||||||| | Sbjct 1096 TCATCGGTCACACTGATCTCATTCCTCGTATATCGAGTCGGTTATCGGAAGAAGCTCAGG 1155 Query 1019 ACTTTCTGATGAGGTG-TTTGGTTAAGGAGCCTGGTTCGAGGTGGACCATCGGTGAACTC 1077 | ||| ||| ||| || |||| |||||||||||||||| || |||| ||| ||||||| Sbjct 1156 ATTTTTTGAGGAGATGCTTTG-TTAAGGAGCCTGGTTCAAGATGGAGGATCAATGAACTC 1214 Query 1078 GTGGACCATCCGTTTCTCTGTTCAGATGAAGAGTTTTCTCACAATGGATTTGTTTATGAT 1137 || ||||||||||||||| ||| |||| || |||||||| || || ||||||||||| Sbjct 1215 ATGAACCATCCGTTTCTCTATTCGGATGTGGATTTTTCTCATAACGGTTTTGTTTATGAC 1274 Query 1138 TGA 1140 ||| Sbjct 1275 TGA 1277 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42507052455 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5