BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45680.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484951 jgi|Araly1|484951|fgenesh2_kg.5__943__AT3G45680.1 2628 0.0
Ahg484953 jgi|Araly1|484953|fgenesh2_kg.5__945__AT3G45690.1 1247 0.0
Ahg937250 jgi|Araly1|937250|scaffold_501441.1 593 1e-168
> Ahg484951 jgi|Araly1|484951|fgenesh2_kg.5__943__AT3G45680.1
Length=1839
Score = 2628 bits (1423), Expect = 0.0
Identities = 1710/1849 (92%), Gaps = 17/1849 (1%)
Strand=Plus/Plus
Query 20 AAACACAGTGGACGTAACTCCTCTGTTTCCTCTGTTCTCTGTCATGGCTAGTTTAGTCTC 79
|||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1 AAACACAGTGCACGTAACTCCTCTGTTTCCTCTGTTTTCTGTCATGGCTAGTGTAGTCTC 60
Query 80 TGGTGATAAAGAAGCTCAAATCTCTGGCGATCCAGGCAGCAAGCGCGGTGGATGGATCAC 139
||||| || ||||||||||| ||||||||||||| | |||||||||||||| ||||||||
Sbjct 61 TGGTGGTACAGAAGCTCAAAGCTCTGGCGATCCAAGAAGCAAGCGCGGTGGCTGGATCAC 120
Query 140 TTTCCCGTTCATGCTCGCTACTTTGTTAGGCCTTTCCGTGACTTCTTTCGGATGGGTAAT 199
||| ||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 121 TTTTCCGTTCATGATCGCTACGTTGTTAGGCCTTTCAGTGACTTCTTTCGGATGGGTAAT 180
Query 200 GAATTTGATCGTCTTCCTAATCGAAGAGTTCAACATCAAGAGCATCGCTGCTGCTCAGAT 259
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 181 GAACTTGATCGTCTTCCTAATCGAAGAGTTCAACATCAAGAGCATCGCTGCTGCGCAAAT 240
Query 260 TTCAAATGTTGCCAATGGATGTCTCAGCATGTTGCCTGTTGTTGCAGCCATTCTAGCTGA 319
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 TTCAAATATTGCCAATGGATGTCTCAGCATGTTGCCTGTTGTTGCAGCCATTTTAGCTGA 300
Query 320 TTCTTTCTTTGGAAACATTCCGGTCATCGCGGCCTCTTCTTTCATTTCTCTGCTTGGAAT 379
|||||||| || |||||||| ||||||| ||||||| ||||||||||||||||||| ||
Sbjct 301 CTCTTTCTTCGGGAACATTCCCGTCATCGTGGCCTCTGCTTTCATTTCTCTGCTTGGCAT 360
Query 380 CGTTCTCTTGACGCTTATTGCATCTTTGGACTACTTGAGACCTCGGCCGTGT-GAAGCAG 438
| |||||||||| ||||||||||||||||||||||||||||| || |||||| ||| | |
Sbjct 361 CATTCTCTTGACTCTTATTGCATCTTTGGACTACTTGAGACCCCGACCGTGTGGAA-CGG 419
Query 439 GGTCAGTCCTATGCACACCGCCGTCAAAACTCCACCTCGGGATCTTGTACACAGCCTTAG 498
||||| ||||||||||| | || ||||||||||| |||||||||||||| |||| ||||
Sbjct 420 GGTCAATCCTATGCACATCTCCATCAAAACTCCAGCTCGGGATCTTGTATGCAGCATTAG 479
Query 499 CTTTAGTGACCACTGGAGCAGGTGGGACACGGTTCACCATGGCATCCGCGGGTGCAAACC 558
|| |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 CTCTAGTCACCACTGGATCAGGTGGGACGCGGTTCACCATGGCATCCGCGGGTGCAAACC 539
Query 559 AATATGAGAAACCTAAAGAACAAGGAAGCTTCTTCAACTGGTACTTCCTCACACTATACG 618
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AATATGAGAAGCCTAAAGAACAAGGAAGCTTCTTCAACTGGTACTTCCTCACACTATACA 599
Query 619 CTGGAGCTATTACTGGTGCAACAGCAATTGTATATATACAAGACAATGCTAGCTGGAAAC 678
||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||
Sbjct 600 TTGGAGCTATTACTGGCGCAACATCAATTGTATATATACAGGACAATGCTAGCTGGAAAC 659
Query 679 TAGGGTTTGGTCTCTGCGCGGCTGCTAATTTGATCAGTTTCATAGTTTTTGTCTCTGGGA 738
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTGGGTTCGGTCTCTGCGCTGCTGCTAATTTGATCAGTTTCATAGTTTTTGTCTCTGGGA 719
Query 739 AGAGATACTACAAGCATGACAAACCAATGGGAAGTCCCTTCACGAGTCTAATCCGCGTTG 798
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 AGAGATACTACAAGCATGACAAACCAATGGGAAGTCCCTTCACGAGTCTGATCCGCGTTG 779
Query 799 TAGTCTCTGCTACAGTAAAAAGGAAGGCTGTAATATCATGCAACGAAGAAGACTATCATC 858
||||| ||||||||| ||||||||||||| | | |||||||| |||||||||||||| |
Sbjct 780 TAGTCGCTGCTACAGCAAAAAGGAAGGCTATGGTCTCATGCAAAGAAGAAGACTATCA-C 838
Query 859 ACTATGGTCT-CGAAAAGGAGGTCAAG-ACTTCTGCTGCAATGCCATCCAAGAGCTTCAG 916
| ||| || ||||| |||| | || ||||||| ||||||||| ||||||||||||||
Sbjct 839 -C-GTGGGCTGGGAAAA-GAGG-CCAGAACTTCTGTTGCAATGCCCTCCAAGAGCTTCAG 894
Query 917 GTTCTTGAACCGCGCCGCTTTGATGACCAAAGATGATTTAAATCAGAAAGAAGGATCAGT 976
|||||||||||| || || |||| |||| |||| ||| ||||| | ||||| || ||||
Sbjct 895 GTTCTTGAACCGTGCAGCGTTGAAGACCGAAGACGATGTAAATAAAAAAGACGGCTCAGA 954
Query 977 TAACAACATCTGGAGGCTATGCTCTGTACAAGAAGTAGAAGATTTCAAAGCCATTCTCCG 1036
|| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 955 TATTAACATATGGAGGCTATGCTCTGTACAGGAAGTAGAAGATTTCAAAGCCATTCTCCG 1014
Query 1037 AGTTTTTCCTCTATGGTTATCAATCATCTTCGTGAGTACTCCTATGGTGATGCAAACAAG 1096
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1015 AGTTTTGCCTCTATGGTTATCCATCATCTTCGTTAGTACTCCTATGGTGATGCAAACAAG 1074
Query 1097 CTTGATTGTACTCCAAGCTCTAGTCACGGACCGCGGACTTGGTCCTAATTTCAAAGTCCC 1156
|||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||
Sbjct 1075 TTTGATTGTACTCCAAGCTCTAGTCACCGACCGTGGGCTTGGTCCTAACTTCAAAGTCCC 1134
Query 1157 GGCCGGTTCCCTCCAAGTAATAATAATCATCACTGCATGCATTGTTATCATCATGAACAA 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GGCCGGTTCCCTCCAAGTAATAATAATCATCACTGCATGCATTGTTATCATCATGAACAA 1194
Query 1217 CTGGCTTGTCTTTCCAATGTACAAGAAGCTAACTCATAAGTTGCTGACACCGCTTCAAAA 1276
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1195 CTGGCTTGTCTTTCCAATGTACAAGAAGCTAACTCAGAAGTTGCTGACACCGCTGCAAAA 1254
Query 1277 AGTCGGTATAGGCCAGGTTCTCACCATTCTAAGCATGGCACTCTCCGCGGTGGTAGAAGC 1336
|||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||
Sbjct 1255 AGTCGGTATAGGCCAGGTTCTCACCATTCTTAGCATGGCACTCTCTGCGGTTGTGGAAGC 1314
Query 1337 AAAGAGGCTGAAAACAGTTGAAAATG-GTCATCCCATGTCAGTGTTATGGTTGTTTCCTC 1395
|||||| ||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 1315 AAAGAGACTGAAAACAGTTGAAAATGAG-CATCCTATGTCAGTGTTATGGTTGTTTCCTC 1373
Query 1396 CCCTTGTGATAGTAGGTATAGGCGAAGCCTTCCAGTTTCCGGCCAATATTGAATTATTTT 1455
|||||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||
Sbjct 1374 CCCTTGTGATAGTAGGTATAGGTGAAGCCTTTCAATTTCCGGCGAATATTGAATTATTTT 1433
Query 1456 ATGGCGAATTCCCCGAGTCTCTGAGGAACACCGCGACTTCATTGACCTCGGTGGTGATTG 1515
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1434 ATGGAGAATTCCCCGAGTCTCTGAGGAACACTGCGACTTCATTGACCTCGGTGGTGATTG 1493
Query 1516 GAATCTCTTTCTATTTGAGCACAGCTCTCATTGATCTTATCCAGAGGACCACAGCGTGGT 1575
|||||||||||||| | ||||||||||| || ||||||||||| |||||||| |||||||
Sbjct 1494 GAATCTCTTTCTATCTAAGCACAGCTCTTATCGATCTTATCCACAGGACCACTGCGTGGT 1553
Query 1576 TACCAAATGACATTAACCACGGAAGAGTGGACAATGTTTACTGGCTTTTAGTCATTGGAG 1635
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1554 TACCAAATGACATAAACCACGGAAGAGTGGACAATGTTTACTGGATTTTAGTCATTGGAG 1613
Query 1636 GAATCTTGAATTTCGGCTACTTCCTTGTGTGTTCTTGGGTCTACAAATATAGAAACCTCA 1695
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1614 GAATCTTGAATTTCGGCTACTTCCTTGTGTGTTCTTGGGTCTACAAATACAGAAACCTCA 1673
Query 1696 AG-GATAATGATCAAGAACAAGATCCAAAAGATGGTACAATGTAAAGACACAACATGTTT 1754
|| | | ||||||| ||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 1674 AGTG-TGATGATCATGAACAAGATCCAAAAGATGTTACAACGTAAAGACTCAACATGTT- 1731
Query 1755 CTATTCTAGTTCTCTTTACATTAA-T-TCTCTCCTGTTAGCTTTTGTGTTTTCGTATGTT 1812
|| |||||||||||||| |||||| | ||||||||||||||||||||||||| |||||||
Sbjct 1732 CTGTTCTAGTTCTCTTTGCATTAAGTATCTCTCCTGTTAGCTTTTGTGTTTTTGTATGTT 1791
Query 1813 TTACCACTTCACATATGGAACTACATTTAGAAAATAATACTTTCAAACT 1861
| ||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1792 T-ACCACTTTACATATTGAACTACATTTAGAAAATAATACTTTCAAACT 1839
> Ahg484953 jgi|Araly1|484953|fgenesh2_kg.5__945__AT3G45690.1
Length=1545
Score = 1247 bits (675), Expect = 0.0
Identities = 1114/1322 (84%), Gaps = 45/1322 (3%)
Strand=Plus/Plus
Query 63 ATGGCTAGTTTAGTCTCTGGTGA-TAAAGAAGCTCAAATCTCTGGCGATCCAGGCAGCAA 121
|||||| ||| | |||||||||| | ||||| ||| | |||| ||||| || |||||||
Sbjct 1 ATGGCTCGTTCACTCTCTGGTGACT-CAGAAGTTCAGACCTCTCGCGATTCAAGCAGCAA 59
Query 122 GCGCGGTGGATGGATCACTTTCCCGTTCATGCTCGCTACTTTGTTAGGCCTTTCCGTGA- 180
|||||||| |||| ||||| || |||||| ||||||| ||||||||||| ||| | |
Sbjct 60 TCGCGGTGGCTGGAAAACTTTTCCATTCATGATCGCTACGTTGTTAGGCCTGTCCAT-AG 118
Query 181 CTTCTTTCGGATGGGTAATGAA-TTTGATCGTCTTCCTAATCGAAG-AGTTCAACATCAA 238
|||| ||||||||||||||||| || | |||||||||||||||| | | |||||||||||
Sbjct 119 CTTCATTCGGATGGGTAATGAACTTAG-TCGTCTTCCTAATCGATGTA-TTCAACATCAA 176
Query 239 GAGCATCGCTGCTGCTCAGATTTCAAATGTTGCCAATGGATGTCTCAGCATGTTGCCTGT 298
||||||||||||| | |||||||||||| ||| ||||||||| | ||||||||||||||
Sbjct 177 GAGCATCGCTGCTACGCAGATTTCAAATATTGTTAATGGATGTGTGAGCATGTTGCCTGT 236
Query 299 TGTTGCAGCCATTCTAGCTGATTCTTTCTTTGGAAACATTCCGGTCATCGCGGCCTCTTC 358
|||||||||||||||||||||||||||||| |||||||| || |||||| ||| ||| |
Sbjct 237 TGTTGCAGCCATTCTAGCTGATTCTTTCTTCGGAAACATACCCGTCATCTCGGTGTCTGC 296
Query 359 TTTCATTTCTCTGCTTGGAATCGTTCTCTTGACGCTT-ATTGCATCTTTGGACTACTTGA 417
||||||||| ||||||| ||| |||||||||| ||| || ||||||| ||||||||||
Sbjct 297 CTTCATTTCTTTGCTTGGCATCCTTCTCTTGAC-CTTGATCACATCTTTTGACTACTTGA 355
Query 418 GACCTCGGCCGTGTGAAGCAGGGTCAGTCCTATG-CACACCGCCGTCAAAACTCCACCTC 476
|||||| |||||| || | |||||| | ||||| || | |||| ||||||||||| |||
Sbjct 356 GACCTCCACCGTGTCAAACGGGGTCAATTCTATGCCA-ATCGCCATCAAAACTCCAGCTC 414
Query 477 GGGATCTTGTACACAGCCTTAGCTTTAGTGACCACTGGAGCAGGTGGGACACGGTTCACC 536
||||||||||| |||||||||||| |||||| || |||| ||| |||||| |||||||||
Sbjct 415 GGGATCTTGTATACAGCCTTAGCTCTAGTGATCATTGGATCAGCTGGGACGCGGTTCACC 474
Query 537 ATGGCATCCGCGGGTGCAAACCAATATGAGAAACCTAAAGAACAAGGAAGCTTCTTCAAC 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTGGCATCCGCGGGTGCAAACCAATATGAGAAACCTAAAGAACAAGGAAGCTTCTTCAAC 534
Query 597 TGGTACTTCCTCACACTATACGCTGGAGCTATTACTGGTGCAACAGCAATTGTATATATA 656
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
Sbjct 535 TGGTACTTCCTCACACTATACTCTGGAGCTATTACTGGCGCAACAGCAATTGTATATACA 594
Query 657 CAAGACAATGCTAGCTGGAAACTAGGGTTTGGTCTCTGCGCGG-CTGCTAATTTGATCAG 715
|| || ||||||||||||||||| || |||||||| || || | |||||| |||||||
Sbjct 595 CAGGAAAATGCTAGCTGGAAACTTGGTTTTGGTCTTTGTGCCATC-GCTAATCTGATCAG 653
Query 716 TTTCATAGTTTTTGTCTCTGGGAAGAGATACTACAAGCATGACAAACCAATGGGAAGTCC 775
|||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct 654 TTTCATCGTTTTCGTCTCTGGGAAGAGATTCTACAAGCATGACAAACCCATGGGAAGCCC 713
Query 776 CTTCACGAGTCTAATCCGCGTTGTAGTCTCTGCTACAGTAAAAAGGAAGGCTGTAATATC 835
|||||| | ||| ||||| |||||| || ||||||||| |||||||||||||||||| ||
Sbjct 714 CTTCACCAATCTGATCCGTGTTGTATTCGCTGCTACAGCAAAAAGGAAGGCTGTAATTTC 773
Query 836 ATGCA-ACGAAGAAGACTATCATCACTATGGTCTCGAAA-AGGAGGTCAAGACTTCTGCT 893
|| || | |||||||||||||| | | |||| || | || || | | |||||| ||||||
Sbjct 774 ATCCAGA-GAAGAAGACTATCA-C-C-ATGGGCTTGGAAGAGAAAG-CAAGACGTCTGCT 828
Query 894 GCAATGCCATCCAAGAGCTTCAGGTTCTTGAACCGCGCCGCTTTGATGACCAAAGATGAT 953
|||||||| |||| ||||||||||||||| ||||| || || || | | ||| ||
Sbjct 829 GCAATGCCCTCCACGAGCTTCAGGTTCTTTAACCGTGCAGCATT-A--A--AAACC-GA- 881
Query 954 TTAAATCAGAAAGAAGGATCAGTTAACAACATCTGGAGGCTATGCTCTGTACAAGAAGTA 1013
| | | || || ||||| |||||||||||||||||||| || |||||||||
Sbjct 882 --AGA-C-GAC-------TCTGTTAATAACATCTGGAGGCTATGCTCGGTTCAAGAAGTA 930
Query 1014 GAAGATTTCAAAGCCATTCTCCGAGTTTTTCCTCTATGGTTATCAATCATCTTCGTGAGT 1073
|||||||| ||||| || |||||||| | ||||| | | || | ||||||||||| |||
Sbjct 931 GAAGATTTTAAAGCTGTTTTCCGAGTTCTCCCTCTGTTGCTAGCCATCATCTTCGTTAGT 990
Query 1074 ACTCCTATGGTGATGCAAACAAGCTTGATTGTACTCCAAGCTCTAGTCACGGACCGCGGA 1133
||||| |||||||||||||||||||||||| |||| |||||||||||||| ||||| ||
Sbjct 991 ACTCCCATGGTGATGCAAACAAGCTTGATTATACTTCAAGCTCTAGTCACAGACCGTGGG 1050
Query 1134 CTTGG-TCCTAATTTCAAAGTCCCGGCCGGTTCCCTCCAAGTAATAATAATCATCACTGC 1192
||||| || | | |||||| |||||||||| ||||||||||| ||| |||||||||| ||
Sbjct 1051 CTTGGCTC-TCACTTCAAAATCCCGGCCGGGTCCCTCCAAGTTATAGTAATCATCACCGC 1109
Query 1193 ATGCATTGTTATCATCATGAACAACTGGCTTGTCTTTCCAATGTACAAGAAGCTAACTCA 1252
|||||| ||||| | |||||||| | ||||||| ||| |||||| | ||| |||| ||
Sbjct 1110 ATGCATCGTTATTGTTATGAACAATTTCCTTGTCTATCCCATGTACCACAAGTTAACCCA 1169
Query 1253 TAAGTTGCTGACACCGCTTCAAAAAGTCGGTATAGGCCAGGTTCTCACCATTCTAAGCAT 1312
|| | | || |||||||||||||||||||||||||| ||| ||| |||| |||||||
Sbjct 1170 TACGCCATTAACCCCGCTTCAAAAAGTCGGTATAGGCCACGTTTTCATCATTTTAAGCAT 1229
Query 1313 GGC-ACTCTCCGCGGTGGTAGAAGCAAAGAGGCTGAAAACAGTTGAA-AATGGTCATCCC 1370
||| | | ||||| || || |||||||||||||||||||||||| || ||||| ||| ||
Sbjct 1230 GGCGA-TATCCGCCGTTGTCGAAGCAAAGAGGCTGAAAACAGTT-AATAATGGCCATACC 1287
Query 1371 AT 1372
||
Sbjct 1288 AT 1289
> Ahg937250 jgi|Araly1|937250|scaffold_501441.1
Length=1134
Score = 593 bits (321), Expect = 1e-168
Identities = 701/881 (80%), Gaps = 39/881 (4%)
Strand=Plus/Plus
Query 441 TCAGTCCTATG-CACA-CCGCCGTCAAAACTCCACCTCGGGATCTTGTACACAGCCTTAG 498
||| ||||||| || | || || ||||||||||||||| |||||||||| |||||||||
Sbjct 34 TCAATCCTATGCCA-ATCC-CCATCAAAACTCCACCTCCGGATCTTGTATGCAGCCTTAG 91
Query 499 CTTTAGTGACCACTGGAGCAGGTGGGACACGGTTCACCATGGCATCCGCGGGTGCAAACC 558
|| |||||||| ||||| | | ||||| | || | | ||||||| |||||||||||||
Sbjct 92 CTCTAGTGACCGCTGGAACTGCTGGGATAAGGGTGGCTTTGGCATCTGCGGGTGCAAACC 151
Query 559 AATATGAGAAACCTAAAGA-AC-AAGGAAGCTTCTTCAACTGGTACTTCCTCACACTATA 616
||||||| |||||| ||| || |||||| ||||||||||||||||||| | || || |
Sbjct 152 AATATGATAAACCT--AGACACAAAGGAACCTTCTTCAACTGGTACTTCTTTACGGTAAA 209
Query 617 CGCTGGAGCTATTACTGGTGCAACAGCAATTGTATATATACAAGACAATGCTAGCTGGAA 676
| || || |||| | | || ||| ||||||| |||| || || || |||||||||||
Sbjct 210 TACAGGCGCAATTATTAGCGCGACATCAATTGTGTATACGCAGGAGAACGCTAGCTGGAA 269
Query 677 ACTAGGGTTTGGTCTCTGCGCGGCTGCTAATTTGATCAGTTTCATAGTTTTTGTCTCTGG 736
|| ||||| ||||| || || |||||||||||||||||||||||||||||| |||| ||
Sbjct 270 GCTCGGGTTCGGTCTTTGTGCAGCTGCTAATTTGATCAGTTTCATAGTTTTTATCTCCGG 329
Query 737 GAAGAGATACTACAAGCATGACAAACCAATGGGAAGTCCCTTCACGAGTCTAATCCGCGT 796
|||||||| |||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 330 GAAGAGATTCTACAAGCATGACAAACCAATGGGAAGTCCCTTCACAAGCCTGATCCGCGT 389
Query 797 TGTAGTCTCTGCTACAGTAAAAAGGAAGGCTGTAATATCATGC-AACGAAGAAGACTATC 855
| ||||| |||||| | | |||| || ||||| ||||| | | || |||||||| ||||
Sbjct 390 TTTAGTCGCTGCTATACTGAAAATAAAAGCTGTTATATCTT-CTAAAGAAGAAGATTATC 448
Query 856 ATCACTATGGTCTCGAAAAGGA-GGTCAAGACTTCTGCTGCAATGCCATCCAAGAGCTTC 914
| | | | || ||||| || || ||||||||| | || |||||| ||||||||||||
Sbjct 449 ACCGGGA-G--CTAGAAAAAGATGG-CAAGACTTCCGTTGGAATGCCTTCCAAGAGCTTC 504
Query 915 AGGTTCTTGAACCGCGCCGCTTTGATGACCAAAGATGATTTAAATCAGAAAGAAGGATCA 974
|||||||||||||| || || |||| ||| | || || |||||| ||||||| || |||
Sbjct 505 AGGTTCTTGAACCGTGCAGCATTGAAGACTGATGAGGACTTAAATGAGAAAGACGGCTCA 564
Query 975 GTTAACAACATCTGGAGGCTATGCTCTGTACAAGAAGTAGAAGATTTCAAAGCCATTCTC 1034
||||| ||||||||||||||||| ||||| | |||||||||||||| ||| | |||||
Sbjct 565 GTTAATAACATCTGGAGGCTATGTTCTGTTGAGGAAGTAGAAGATTTGAAATCTGTTCTC 624
Query 1035 CGAGTTTTTCCTCTATGGTTATCAAT-CATCTTCGT-GAGTACT-CCTAT-GGTGATGCA 1090
||||| | |||||||||||| |||| | | ||||| | | | | || || ||| | ||
Sbjct 625 AGAGTTCTCCCTCTATGGTTAGCAATTC-TATTCGTTG-GAAATTCC-ATTGGTTTT-CA 680
Query 1091 AACAAGCTTGATTGTACTCCAAGCTCTAGTCACGGACCGCGGACTTGG-TCCTA-ATTTC 1148
| ||||| ||| || || |||||||| || || ||||| ||||| || || || ||| |
Sbjct 681 AGCAAGCATGACGGTTCTACAAGCTCTGGTAACAGACCGAGGACTCGGCTC-TAGATT-C 738
Query 1149 AAAGTCCCGGCCGGTTCCCTCCAAGTAATAATAATCATCAC-TGCATGCAT-TGTTATCA 1206
||||| |||||||| || || ||||||||| || ||||| | | ||||| | | || |
Sbjct 739 AAAGTTCCGGCCGGGTCACTGCAAGTAATAGTACTCATCTCAT-CATGCGTCT-TTCTTG 796
Query 1207 T-CATGAACAACTGG-CT-TGTCTTTCCAATGTA-CAAGAAGCTAACTCATAAGTTGCTG 1262
| | | || |||||| || ||| | ||| |||| || |||| |||| ||||| |||
Sbjct 797 TGC-TCAATAACTGGACTATGTATC-CCA-TGTATCA-GAAGATAACCCATAAACAGCTA 852
Query 1263 ACACCGCTTCAAAAAGTCGGTATAGGCCAGGTTCTCACCAT 1303
|||||||||||| |||||||||||||||| ||| ||| |||
Sbjct 853 ACACCGCTTCAACAAGTCGGTATAGGCCAAGTTTTCAACAT 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5