BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45690.1
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484953 jgi|Araly1|484953|fgenesh2_kg.5__945__AT3G45690.1 2085 0.0
Ahg484951 jgi|Araly1|484951|fgenesh2_kg.5__943__AT3G45680.1 1317 0.0
Ahg937250 jgi|Araly1|937250|scaffold_501441.1 547 8e-155
Ahg347652 jgi|Araly1|347652|fgenesh1_pg.C_scaffold_5001044 172 5e-42
> Ahg484953 jgi|Araly1|484953|fgenesh2_kg.5__945__AT3G45690.1
Length=1545
Score = 2085 bits (1129), Expect = 0.0
Identities = 1404/1533 (92%), Gaps = 34/1533 (2%)
Strand=Plus/Plus
Query 30 GACCACTCGCGATCCAAGCAGCAAGCGCGGTGGCTGGAAAACGTTTCCATTCATGATCGC 89
|||| |||||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 36 GACCTCTCGCGATTCAAGCAGCAATCGCGGTGGCTGGAAAACTTTTCCATTCATGATCGC 95
Query 90 TACATTGTTAGGACTTTCCATAGCTTCATTCGGATGGGTGATGAACTTGGTCGTCTTCCT 149
||| |||||||| || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 96 TACGTTGTTAGGCCTGTCCATAGCTTCATTCGGATGGGTAATGAACTTAGTCGTCTTCCT 155
Query 150 AATTAAAGAATTCAACATCAAGAGCATCGCTGCTACGCAGAATTCTAATATTGTTAATGG 209
||| | | |||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 156 AATCGATGTATTCAACATCAAGAGCATCGCTGCTACGCAGATTTCAAATATTGTTAATGG 215
Query 210 ATGTGTGAGCATGTTGCCTGTTGTTGCAGCCATTCTAGCTGATTCTTTTTTCGGAAACAT 269
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 216 ATGTGTGAGCATGTTGCCTGTTGTTGCAGCCATTCTAGCTGATTCTTTCTTCGGAAACAT 275
Query 270 TCCCGTCATCTCCGTCTCTGCCTTCATTTCTTTGCTTGGCATCATTCTATTGACCATGAT 329
||||||||||| || ||||||||||||||||||||||||||| |||| |||||| ||||
Sbjct 276 ACCCGTCATCTCGGTGTCTGCCTTCATTTCTTTGCTTGGCATCCTTCTCTTGACCTTGAT 335
Query 330 TACATCTTTGGACCACTTGAGACCTCCACCGTGTGAAACAGGGTCAATTCTATGCGAATC 389
|||||||| ||| |||||||||||||||||||| |||| ||||||||||||||| ||||
Sbjct 336 CACATCTTTTGACTACTTGAGACCTCCACCGTGTCAAACGGGGTCAATTCTATGCCAATC 395
Query 390 GCCATCAAAACTCCAGCTCGGGATCTTGTATATAGCCTTAGCTCTAGTGATCATTGGATC 449
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 396 GCCATCAAAACTCCAGCTCGGGATCTTGTATACAGCCTTAGCTCTAGTGATCATTGGATC 455
Query 450 AGCTGGTACGCGGTTTACCTTAGCATCCGCGGGTGCAAACCAATATGAGAAACCTAAAGA 509
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 456 AGCTGGGACGCGGTTCACCTTGGCATCCGCGGGTGCAAACCAATATGAGAAACCTAAAGA 515
Query 510 ACAAGGAAGCTTTTTCAACTGGTACTTCCTCACACTCTACACTGGAGCTATTACTGGTGC 569
|||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 516 ACAAGGAAGCTTCTTCAACTGGTACTTCCTCACACTATACTCTGGAGCTATTACTGGCGC 575
Query 570 AACAGCAATTGTATATACACAGGAAAATGCTAGCTGGAAACTTGGGTTCGGTCTTTGCGC 629
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 576 AACAGCAATTGTATATACACAGGAAAATGCTAGCTGGAAACTTGGTTTTGGTCTTTGTGC 635
Query 630 CGTCGCTAATTTGATCAGTTTCATAGTTTTCGTCTCTGGCAAGAGATACTACAAGCATGA 689
| |||||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 636 CATCGCTAATCTGATCAGTTTCATCGTTTTCGTCTCTGGGAAGAGATTCTACAAGCATGA 695
Query 690 CAAACCAATGGGAAGTCCCTTCACAAATCTGATCCGCGTTGTAGTCGCTGCTACAAG-AA 748
|||||| |||||||| |||||||| ||||||||||| |||||| ||||||||||| | ||
Sbjct 696 CAAACCCATGGGAAGCCCCTTCACCAATCTGATCCGTGTTGTATTCGCTGCTACA-GCAA 754
Query 749 AAAGGAAAGCTGTGATTTCATCTAGAGAAGAAGACTATCACCATGGGCTTGGAAGAGAAG 808
||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 755 AAAGGAAGGCTGTAATTTCATCCAGAGAAGAAGACTATCACCATGGGCTTGGAAGAGAAA 814
Query 809 GCAAGACATCTTCTGCAATGCCCTCCAAGAGCTTTAGGTTCTTTAACCGTGCAGCATTGA 868
||||||| ||| ||||||||||||||| |||||| ||||||||||||||||||||||| |
Sbjct 815 GCAAGACGTCTGCTGCAATGCCCTCCACGAGCTTCAGGTTCTTTAACCGTGCAGCATTAA 874
Query 869 AAACCGAAGATGACTCAGTTAATAACAACTGGAGGCTATGTTCTGTTCAAGAAGTAGAAG 928
|||||||||| ||||| |||||||||| |||||||||||| || ||||||||||||||||
Sbjct 875 AAACCGAAGACGACTCTGTTAATAACATCTGGAGGCTATGCTCGGTTCAAGAAGTAGAAG 934
Query 929 ATTTTAAAGCCGTTTTCCGAGTTCTCCCTCTGTTACTAGCCATCATCTTCGTTAGTACTC 988
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 935 ATTTTAAAGCTGTTTTCCGAGTTCTCCCTCTGTTGCTAGCCATCATCTTCGTTAGTACTC 994
Query 989 CCATGGTGACGCAAACAAGCTTGATTATA-TTACAAGCTCTAGTCACAGACCGCGGTCTC 1047
||||||||| ||||||||||||||||||| || |||||||||||||||||||| || ||
Sbjct 995 CCATGGTGATGCAAACAAGCTTGATTATACTT-CAAGCTCTAGTCACAGACCGTGGGCTT 1053
Query 1048 GGGC-CTCACTTCAAAATCCCGGCCGGGTCCCTCCAAGTCATAGTAATCATCACTGCATG 1106
|| | |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1054 GG-CTCTCACTTCAAAATCCCGGCCGGGTCCCTCCAAGTTATAGTAATCATCACCGCATG 1112
Query 1107 TATTGTTATC-TTAATGAACAATTGCCTTGTCTATCCCATGTACCAGAAGCTAGCCCATA 1165
|| ||||| ||| ||||||||| ||||||||||||||||||||| ||| || ||||||
Sbjct 1113 CATCGTTATTGTTA-TGAACAATTTCCTTGTCTATCCCATGTACCACAAGTTAACCCATA 1171
Query 1166 AGCCATTGACACCGCTTCAAAAAGTCGGTATAGGCCACGTTTTCATCATTTTAAGCATGG 1225
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 CGCCATTAACCCCGCTTCAAAAAGTCGGTATAGGCCACGTTTTCATCATTTTAAGCATGG 1231
Query 1226 CGATATCCGCCATTGTGGAAGCAAAGAGGCTGAAAACAGTTACTAATGGCCATTCCATGT 1285
||||||||||| |||| ||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1232 CGATATCCGCCGTTGTCGAAGCAAAGAGGCTGAAAACAGTTAATAATGGCCATACCAT-- 1289
Query 1286 CAGTGCTATGGCTGCACCGCGACTTCATTG-CCTCAGTGGTGATTGGAATATCTTTCTAC 1344
|| | | ||| ||||||||| ||||||||||||||||||| || ||||||
Sbjct 1290 CA---C-----C-GCA-----ACTTCATTGACCTCAGTGGTGATTGGAATCTCCTTCTAC 1335
Query 1345 CTGAGCACAGCTCTGATCACTCTGATCCAGAAGACCACCAAGTGGTTACCAAATGATATT 1404
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1336 CTGAGCACAGCTCTGATCACACTGATCCAGAAGACCACCAAGTGGTTACCAAATGATATT 1395
Query 1405 AACCATGGAAGAGTTGACAATGTTTACTGGCTTTTAGTCATTGTAGGAGTCTTGAA---C 1461
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1396 AACCGTGGAAGAGTTGACAACGTTTACTGGCTTTTAGTCATTGTAGGAGTCTTGAATTTC 1455
Query 1462 ---TATTTCCTTGTCTGCGCTTGGTTTTACAGATATAGAAACCTGAATGATGATGATGAT 1518
||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 1456 GGCTATTTCCTTGTATGCGCTTGGTTTTACAGATATAGAGACCTGAA--A-GATGATGAT 1512
Query 1519 CAGGAACAAGATCCAAAAGACGATACAACCTAA 1551
|||||||||||||||||||| | ||||| ||||
Sbjct 1513 CAGGAACAAGATCCAAAAGATGTTACAATCTAA 1545
> Ahg484951 jgi|Araly1|484951|fgenesh2_kg.5__943__AT3G45680.1
Length=1839
Score = 1317 bits (713), Expect = 0.0
Identities = 1110/1295 (86%), Gaps = 54/1295 (4%)
Strand=Plus/Plus
Query 38 GCGATCCAAGCAGCAAGCGCGGTGGCTGGAAAACGTTTCCATTCATGATCGCTACATTGT 97
|||||||||| ||||||||||||||||||| || ||||| |||||||||||||| ||||
Sbjct 87 GCGATCCAAGAAGCAAGCGCGGTGGCTGGATCACTTTTCCGTTCATGATCGCTACGTTGT 146
Query 98 TAGGACTTTCCA-TAG-CTTCATTCGGATGGGTGATGAACTTGGTCGTCTTCCTAATTAA 155
|||| |||| || | | |||| ||||||||||| ||||||||| ||||||||||||| |
Sbjct 147 TAGGCCTTT-CAGT-GACTTCTTTCGGATGGGTAATGAACTTGATCGTCTTCCTAATCGA 204
Query 156 AGAATTCAACATCAAGAGCATCGCTGCTACGCAGAA-TTCTAATATTGTTAATGGATGTG 214
||| |||||||||||||||||||||||| |||| || ||| ||||||| |||||||||
Sbjct 205 AGAGTTCAACATCAAGAGCATCGCTGCTGCGCA-AATTTCAAATATTGCCAATGGATGTC 263
Query 215 TGAGCATGTTGCCTGTTGTTGCAGCCATTCTAGCTGATTCTTTTTTCGGAAACATTCCCG 274
| ||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||
Sbjct 264 TCAGCATGTTGCCTGTTGTTGCAGCCATTTTAGCTGACTCTTTCTTCGGGAACATTCCCG 323
Query 275 TCATC-TCCGTCTCTGCCTTCATTTCTTTGCTTGGCATCATTCTATTGAC-CATGATTAC 332
||||| | | |||||| ||||||||| |||||||||||||||| ||||| | | ||| |
Sbjct 324 TCATCGT-GGCCTCTGCTTTCATTTCTCTGCTTGGCATCATTCTCTTGACTC-TTATTGC 381
Query 333 ATCTTTGGACCACTTGAGACCTCC-ACCGTGTGAAACAGGGTCAATTCTATGCGA-ATCG 390
|||||||||| |||||||||| || |||||||| ||| |||||||| |||||| | |||
Sbjct 382 ATCTTTGGACTACTTGAGACC-CCGACCGTGTGGAACGGGGTCAATCCTATGC-ACATCT 439
Query 391 CCATCAAAACTCCAGCTCGGGATCTTGTATATAGCCTTAGCTCTAGTGATCATTGGATCA 450
|||||||||||||||||||||||||||||| ||| ||||||||||| | || |||||||
Sbjct 440 CCATCAAAACTCCAGCTCGGGATCTTGTATGCAGCATTAGCTCTAGTCACCACTGGATCA 499
Query 451 GCTGGTACGCGGTTTACCTTAGCATCCGCGGGTGCAAACCAATATGAGAAACCTAAAGAA 510
| ||| |||||||| ||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 500 GGTGGGACGCGGTTCACCATGGCATCCGCGGGTGCAAACCAATATGAGAAGCCTAAAGAA 559
Query 511 CAAGGAAGCTTTTTCAACTGGTACTTCCTCACACTCTACACTGGAGCTATTACTGGTGCA 570
||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct 560 CAAGGAAGCTTCTTCAACTGGTACTTCCTCACACTATACATTGGAGCTATTACTGGCGCA 619
Query 571 ACAGCAATTGTATATACACAGGAAAATGCTAGCTGGAAACTTGGGTTCGGTCTTTGCGCC 630
||| |||||||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct 620 ACATCAATTGTATATATACAGGACAATGCTAGCTGGAAACTTGGGTTCGGTCTCTGCGCT 679
Query 631 GTC-GCTAATTTGATCAGTTTCATAGTTTTCGTCTCTGGCAAGAGATACTACAAGCATGA 689
| | |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 680 G-CTGCTAATTTGATCAGTTTCATAGTTTTTGTCTCTGGGAAGAGATACTACAAGCATGA 738
Query 690 CAAACCAATGGGAAGTCCCTTCACAAATCTGATCCGCGTTGTAGTCGCTGCTACAAG-AA 748
|||||||||||||||||||||||| | |||||||||||||||||||||||||||| | ||
Sbjct 739 CAAACCAATGGGAAGTCCCTTCACGAGTCTGATCCGCGTTGTAGTCGCTGCTACA-GCAA 797
Query 749 AAAGGAAAGCTGTGATTTCAT-CTAGAGAAGAAGACTATCACCATGGGCTTGGAAGAGAA 807
||||||| ||| || | |||| | | ||||||||||||||||| |||||| |||| |||
Sbjct 798 AAAGGAAGGCTATGGTCTCATGCAA-AGAAGAAGACTATCACCGTGGGCTGGGAAAAGA- 855
Query 808 GGCAAGA-CATCT-TCTGCAATGCCCTCCAAGAGCTTTAGGTTCTTTAACCGTGCAGCAT 865
||| ||| | ||| | ||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 856 GGCCAGAACTTCTGT-TGCAATGCCCTCCAAGAGCTTCAGGTTCTTGAACCGTGCAGCGT 914
Query 866 TGAAAACCGAAGA---TG-A-----------C---TCAGTTAATAACA-ACTGGAGGCTA 906
|||| |||||||| || | | |||| || ||||| | |||||||||
Sbjct 915 TGAAGACCGAAGACGATGTAAATAAAAAAGACGGCTCAGATATTAACATA-TGGAGGCTA 973
Query 907 TGTTCTGTTCAAGAAGTAGAAGATTTTAAAGCCGTTTTCCGAGTTCTCCCTCTGTTACTA 966
|| ||||| || |||||||||||||| |||||| || |||||||| | ||||| | ||
Sbjct 974 TGCTCTGTACAGGAAGTAGAAGATTTCAAAGCCATTCTCCGAGTTTTGCCTCTATGGTTA 1033
Query 967 GCCATCATCTTCGTTAGTACTCCCATGGTGACGCAAACAAGCTTGATTATATTACAAGCT 1026
|||||||||||||||||||||| ||||||| ||||||||| |||||| || | ||||||
Sbjct 1034 TCCATCATCTTCGTTAGTACTCCTATGGTGATGCAAACAAGTTTGATTGTACTCCAAGCT 1093
Query 1027 CTAGTCACAGACCGCGGTCTCGGGCCTCACTTCAAAATCCCGGCCGGGTCCCTCCAAGTC 1086
|||||||| ||||| || || || ||| |||||||| |||||||||| |||||||||||
Sbjct 1094 CTAGTCACCGACCGTGGGCTTGGTCCTAACTTCAAAGTCCCGGCCGGTTCCCTCCAAGTA 1153
Query 1087 ATAGTAATCATCACTGCATGTATTGTTATCTTAATGAACAATTGCCTTGTCTATCCCATG 1146
||| |||||||||||||||| ||||||||| | |||||||| || ||||||| ||| |||
Sbjct 1154 ATAATAATCATCACTGCATGCATTGTTATCATCATGAACAACTGGCTTGTCTTTCCAATG 1213
Query 1147 TACCAGAAGCTAGCCCATAAGCCATTGACACCGCTTCAAAAAGTCGGTATAGGCCACGTT 1206
||| |||||||| | || ||| |||||||||| |||||||||||||||||||| |||
Sbjct 1214 TACAAGAAGCTAACTCAGAAGTTGCTGACACCGCTGCAAAAAGTCGGTATAGGCCAGGTT 1273
Query 1207 TTCATCATT-TTAAGCATGGCGA-TATCCGCCATTGTGGAAGCAAAGAGGCTGAAAACAG 1264
||| |||| ||| ||||||| | | || || |||||||||||||||| ||||||||||
Sbjct 1274 CTCACCATTCTTA-GCATGGC-ACTCTCTGCGGTTGTGGAAGCAAAGAGACTGAAAACAG 1331
Query 1265 TT-ACTAATG-GCCATTCC-ATGTCAGTGCTATGG 1296
|| | |||| || || || ||||||||| |||||
Sbjct 1332 TTGAA-AATGAGC-AT-CCTATGTCAGTGTTATGG 1363
> Ahg937250 jgi|Araly1|937250|scaffold_501441.1
Length=1134
Score = 547 bits (296), Expect = 8e-155
Identities = 696/881 (79%), Gaps = 60/881 (7%)
Strand=Plus/Plus
Query 373 TCAATTCTATGCGAATCGCCATCAAAACTCCAGCTCGGGATCTTGTATATAGCCTTAGCT 432
||||| |||||| |||| |||||||||||||| ||| ||||||||||| ||||||||||
Sbjct 34 TCAATCCTATGCCAATCCCCATCAAAACTCCACCTCCGGATCTTGTATGCAGCCTTAGCT 93
Query 433 CTAGTGATCATTGGATCAGCT-GG-TACGCGGTTTACCTTAGCATCCGCGGGTGCAAACC 490
||||||| | |||| | ||| || || | || | | || ||||| |||||||||||||
Sbjct 94 CTAGTGACCGCTGGAACTGCTGGGATAAG-GG-TGGCTTTGGCATCTGCGGGTGCAAACC 151
Query 491 AATATGAGAAACCTAAAGA-AC-AAGGAAGCTTTTTCAACTGGTACTTCCTCACACTCTA 548
||||||| |||||| ||| || |||||| ||| ||||||||||||||| | || | |
Sbjct 152 AATATGATAAACCT--AGACACAAAGGAACCTTCTTCAACTGGTACTTCTTTACGGTAAA 209
Query 549 CACTGGAGCTATTACTGGTGCAACAGCAATTGTATATACACAGGAAAATGCTAGCTGGAA 608
|| || || |||| | | || ||| ||||||| ||||| ||||| || |||||||||||
Sbjct 210 TACAGGCGCAATTATTAGCGCGACATCAATTGTGTATACGCAGGAGAACGCTAGCTGGAA 269
Query 609 ACTTGGGTTCGGTCTTTGCGCCGTC-GCTAATTTGATCAGTTTCATAGTTTTCGTCTCTG 667
|| |||||||||||||| || | | |||||||||||||||||||||||||| |||| |
Sbjct 270 GCTCGGGTTCGGTCTTTGTGCAG-CTGCTAATTTGATCAGTTTCATAGTTTTTATCTCCG 328
Query 668 GCAAGAGATACTACAAGCATGACAAACCAATGGGAAGTCCCTTCACAAATCTGATCCGCG 727
| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 329 GGAAGAGATTCTACAAGCATGACAAACCAATGGGAAGTCCCTTCACAAGCCTGATCCGCG 388
Query 728 TTGTAGTCGCTGCTACAA-GAAAA-AGGAAAGCTGTGATTTCATCTAGAGAAGAAGACTA 785
|| |||||||||||| | ||||| | |||||||| || || |||| ||||||||| ||
Sbjct 389 TTTTAGTCGCTGCTATACTGAAAATA--AAAGCTGTTATATCTTCTAAAGAAGAAGATTA 446
Query 786 TCACCATGG-GCTTGGAAGAGAAGGCAAGACATCT-TCTGCAATGCCCTCCAAGAGCTTT 843
||||| || ||| | || ||| |||||||| || | || |||||| |||||||||||
Sbjct 447 TCACCG-GGAGCTAGAAAAAGATGGCAAGACTTCCGT-TGGAATGCCTTCCAAGAGCTTC 504
Query 844 AGGTTCTTTAACCGTGCAGCATTGAAAACCGA--AG-A-T-----GA------C---TCA 885
|||||||| ||||||||||||||||| || || || | | || | |||
Sbjct 505 AGGTTCTTGAACCGTGCAGCATTGAAGACTGATGAGGACTTAAATGAGAAAGACGGCTCA 564
Query 886 GTTAATAACAACTGGAGGCTATGTTCTGTTCAAGAAGTAGAAGATTTTAAAGCCGTTTTC 945
|||||||||| ||||||||||||||||||| | |||||||||||||| ||| | ||| ||
Sbjct 565 GTTAATAACATCTGGAGGCTATGTTCTGTTGAGGAAGTAGAAGATTTGAAATCTGTTCTC 624
Query 946 CGAGTTCTCCCTCTGTTACTAGCCAT-CATCTTCGTTAGTACTCCCAT-GGTGACGCAAA 1003
||||||||||||| | |||| || | | |||||| | | | |||| ||| |||
Sbjct 625 AGAGTTCTCCCTCTATGGTTAGCAATTC-TATTCGTTGGAAATTCCATTGGTTTT-CAAG 682
Query 1004 CAAGCTTGATTATAT-TACAAGCTCTAGTCACAGACCGCGGTCTCGGGC-CTC-ACTTCA 1060
||||| ||| | | |||||||||| || |||||||| || ||||| | || | ||||
Sbjct 683 CAAGCATGACGGT-TCTACAAGCTCTGGTAACAGACCGAGGACTCGG-CTCTAGA-TTCA 739
Query 1061 AAATCCCGGCCGGGTCCCTCCAAGTCATAGTAATCATCAC-TGCATG--TATTG-TTAT- 1115
|| | ||||||||||| || ||||| |||||| ||||| | | |||| | || || |
Sbjct 740 AAGTTCCGGCCGGGTCACTGCAAGTAATAGTACTCATCTCAT-CATGCGTCTTTCTTGTG 798
Query 1116 CTTAATGAACAATTGCCT-TGTCTATCCCATGTACCAGAAGCTAGCCCATAAGCCAT-TG 1173
|| ||| ||| | | || ||| |||||||||| |||||| || ||||||| | | |
Sbjct 799 CTCAAT-AAC--TGGACTATGT--ATCCCATGTATCAGAAGATAACCCATAAAC-AGCTA 852
Query 1174 ACACCGCTTCAAAAAGTCGGTATAGGCCACGTTTTCATCAT 1214
|||||||||||| |||||||||||||||| ||||||| |||
Sbjct 853 ACACCGCTTCAACAAGTCGGTATAGGCCAAGTTTTCAACAT 893
> Ahg347652 jgi|Araly1|347652|fgenesh1_pg.C_scaffold_5001044
Length=1680
Score = 172 bits (93), Expect = 5e-42
Identities = 183/224 (82%), Gaps = 15/224 (7%)
Strand=Plus/Plus
Query 1316 CCTCAGTGGTGATTGGAATAT-CTTTCTAC-CTGAGCACAGCTCTGATC-ACTCTGATCC 1372
|||| ||||||||||| |||| | |||||| | ||||| ||| ||||| | |||||| |
Sbjct 1442 CCTCGGTGGTGATTGGGATATGC-TTCTACAC-AAGCACTGCTTTGATCGA-TCTGATTC 1498
Query 1373 AGAAGACCACCAAGTGGTTACCAAATGATATTAACCATGGAAGAGTTGACAATGTTTACT 1432
||| ||| ||| |||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 1499 AGAGGACAACCGCGTGGTTACCAGATGACATAAACCATGGAAGAGTTGACAATGTTTACT 1558
Query 1433 GGCTTTTAGTCATTGTAGGAGTCTTGAA-CT-----ATTTCCTTGTCTGCGCTTGGTTTT 1486
|| ||||||| || | |||||||||||| || |||| ||||| || |||||||||
Sbjct 1559 GGGTTTTAGTTATAGGAGGAGTCTTGAATCTTGGCTATTTTCTTGTGTGTTCTTGGTTTT 1618
Query 1487 ACAGATATAGAAACCTGAATGATGATGATGATCAGGAACAAGAT 1530
||| ||| |||||||| || || |||||||||| || ||||||
Sbjct 1619 ACAAATACAGAAACCTCAA-GA--ATGATGATCATGAGCAAGAT 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5