BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45700.1
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897373 jgi|Araly1|897373|Al_scaffold_0005_1339 1746 0.0
Ahg484951 jgi|Araly1|484951|fgenesh2_kg.5__943__AT3G45680.1 1402 0.0
Ahg937250 jgi|Araly1|937250|scaffold_501441.1 483 3e-135
Ahg937247 jgi|Araly1|937247|scaffold_501438.1 357 2e-97
Ahg347652 jgi|Araly1|347652|fgenesh1_pg.C_scaffold_5001044 235 8e-61
> Ahg897373 jgi|Araly1|897373|Al_scaffold_0005_1339
Length=1530
Score = 1746 bits (945), Expect = 0.0
Identities = 1334/1518 (88%), Gaps = 42/1518 (3%)
Strand=Plus/Plus
Query 53 ATGGCTAATTCAGACTCTGGTGACAAAGAAGCGCATCGCTCTA--G---CAAGC----A- 102
|||||| ||||| |||| ||||||| ||||||||||||||||| | ||||| |
Sbjct 1 ATGGCTGATTCAAACTCCGGTGACACAGAAGCGCATCGCTCTAGCGATCCAAGCGGAAAG 60
Query 103 --TGGTGGCTGGATCACTTTACCGTTCATGCTCGTTACATTGTTAGGCATGTCGATAACT 160
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CGTGGTGGCTGGATCACTTTACCGTTCATGCTCGTTACATTGTTAGGCATGTCCATAACT 120
Query 161 TATTTTGGATGGGTAATGAACTTGATCGTCTTCTTGATCGAGGAATTCAACATCAAGAGC 220
| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 121 TCTTTCGGATGGGGAATGAACTTGATCGTCTTCTTGATCGAGGAATTCAATATCAAGAAC 180
Query 221 ATCGCAGCTGTTCAGATTTCAAATATTGTCAATGGAGTTGTCAACATGTTGCCTGTTGTC 280
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCGCTGCTGCTCAGATTTCAAATATTGTCAATGGAGTTGTCAACATGTTGCCTGTTGTT 240
Query 281 GCAGCCATCCTAGCCGATTCCTTTTTTGGGAACATTCCTGTCATCTCAGCCTCCGCTTTC 340
|||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct 241 GCAGCCATCCTAGCCGATTCCTTTTTCGGGAACATTCCCGTCATCTCGGCTTCCGCTTTC 300
Query 341 ATTTCTCTAACTGGAATATCGCTCTTGACTCTTATTG-CATCTTTGGACTATTTGAGACC 399
|||||| | |||||| | || |||||||| |||| | ||||||||||||| |||| |||
Sbjct 301 ATTTCTTTGACTGGAGTCTCTCTCTTGAC-CTTAATCACATCTTTGGACTACTTGATACC 359
Query 400 TAGACCGTGTGAAACGGGATCAATTTTATGCCAATCACCATCAAAACTACAACTTGGGAT 459
||||||||||||||| || ||||| |||||||||| ||||||||||||||||| || ||
Sbjct 360 TAGACCGTGTGAAACAGGCTCAATCCTATGCCAATCGCCATCAAAACTACAACTCGGAAT 419
Query 460 CTTGTATGCAGCCTTAGCTCTAGTGATCACTGGAACAGCTGGGACGCGGTTCATCTTGGC 519
|||||||||||||||||||||||| || |||| |||||||||||||||||| ||||||
Sbjct 420 CTTGTATGCAGCCTTAGCTCTAGTAATTGTTGGATCAGCTGGGACGCGGTTCACCTTGGC 479
Query 520 ATCCGCAGGTGCAAACCAATATAAGAAACCTAAAGAACAAGGAAGGTTCTTCAACTGGTA 579
| |||||||||| ||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 480 AGCCGCAGGTGCGAACCAATATAAGAAACCGAAAGAACAAGGACGCTTCTTCAACTGGTT 539
Query 580 CTTTTTCACACTATATGGTGGAGCGATTACTGGCACGACAGCAATTGTATATGCACAGGA 639
||| || || ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 CTTCCTCTCATTATATACCGGAGCGATTACTGGCACGACAGCAATTGTATATACACAGGA 599
Query 640 CAATGCTAGCTGGAAGCTTGGATTCGGTCTCTGCGTCGCTGCTAACTTGATCAGTTTCAT 699
||||||||||||||| ||||| || |||||||| | ||||||||| ||||||||||||||
Sbjct 600 CAATGCTAGCTGGAAACTTGGGTTTGGTCTCTGTGCCGCTGCTAATTTGATCAGTTTCAT 659
Query 700 CATTTTCGTCGCTGGGAAGAGACTCTACGAGCATGACCAACCTTTGGGAAGTCCTTATAC 759
| ||||| | || ||||||||| ||||| ||||||| |||| ||||||||||| |||||
Sbjct 660 CGTTTTCATTGCCGGGAAGAGATTCTACAAGCATGATAAACCCTTGGGAAGTCCATATAC 719
Query 760 AAGTCTAGTT-CGCGTTTTAGTCGCTGCTACAATGAAACGAAAGGCTGTGATTTCATACA 818
||| || | | ||||||||||| |||||||||||||| |||||||| ||||||||| ||
Sbjct 720 AAGCCT-GATACGCGTTTTAGTTTCTGCTACAATGAAAAGAAAGGCTATGATTTCAT-CA 777
Query 819 AA-GACGAAGACTATCATCACCGCGAG-CTCGAAAAAGAGACCAAGACTTATGTTGCAAT 876
|| |||||||||||||||||| | | ||| |||||||| ||||||||| | | ||||
Sbjct 778 AAAGACGAAGACTATCATCACTATG-GTCTCAAAAAAGAGGCCAAGACTTCTACTACAAT 836
Query 877 GCCCTCCAAGAGCTTCAGGTTCTTGAACCGTGCAGCATTGAAGAC--A-GAAG------- 926
||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 837 GCCCTCCAAGAGCTTCAGGTTCTTGAACCGTGCAGCATTGAAGACCGAAGAAGATTTAAA 896
Query 927 ---GAG-----ACTCAAATAATAACATGTGGAGGCTATGCTCTGTTCAGGAAGTAGAAGA 978
||| |||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 897 CCCGAGCGGTGACTCAATTAATAACATGTGGAGGCTATGCTCTGTTCAAGAAGTAGAAGA 956
Query 979 TTTCAAAGCCGTTCTCCGACTTGTCCCTCTCTGGACATCTGTCATGTTCCTCAGCGCTCC 1038
||||||||||||||| |||||||||||||||||| || | ||||||||||||||| ||||
Sbjct 957 TTTCAAAGCCGTTCTACGACTTGTCCCTCTCTGGGCAGCCGTCATGTTCCTCAGCACTCC 1016
Query 1039 CCTAGCGGTGCAAATGAGCATGACTGTCCTCCAAGCTATGGTCATGGACCGTAAACTTGG 1098
| || ||||||||||| ||||| |||||||||||| ||||||||||||| |||||||
Sbjct 1017 TGTGGCAGTGCAAATGAGTATGACGGTCCTCCAAGCTTTGGTCATGGACCGCGAACTTGG 1076
Query 1099 CCCACACTTCAAAGTCTCTGCTGGGTCTATGCAAGTCATAGCACTCGTCTCTGGATGCGT 1158
||| ||||||||||||||||| |||||| |||||||||||| |||| |||||||||| ||
Sbjct 1077 CCCGCACTTCAAAGTCTCTGCCGGGTCTCTGCAAGTCATAGTACTCATCTCTGGATGTGT 1136
Query 1159 CTTTATCATACTTAACAACTGGACTACCTATCCCATGTATCAGAAGCTAATCCGCAAACC 1218
||||||||| | |||||||||| || |||||||||||| ||||||||| ||||||||||
Sbjct 1137 CTTTATCATGGTCAACAACTGGATTATCTATCCCATGTACCAGAAGCTATTCCGCAAACC 1196
Query 1219 GCTGACACCGCTACAAAAAGTCGGGATCGGCCACGTTTTGACAATCTTAAGCATGGCGAT 1278
||||||||||| ||| |||| ||||| |||||||||||||| ||| |||||||||||||
Sbjct 1197 ACTGACACCGCTTCAACAAGTTGGGATTGGCCACGTTTTGACCATCCTAAGCATGGCGAT 1256
Query 1279 ATCAGCCGTTGTTGAAGCAAAGAGGCTGAAAACAGTTGAAAATAGCCATC-TCATGTCAG 1337
||||||| |||| ||||||| |||||||||||||||||||||| ||| || | |||||||
Sbjct 1257 ATCAGCCATTGTGGAAGCAAGGAGGCTGAAAACAGTTGAAAATGGCCGTCCT-ATGTCAG 1315
Query 1338 TGCTATGGCTGGTTCCTGCTCTCGTGATTAATGGAATAGGTGAGGCCTTTCATTTTCCAG 1397
|||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct 1316 TGCTATGGCTAGTTCCTGCTCTCGTGATGGTTGGAATAGGCGAGGCCTTTCATTTTCCCG 1375
Query 1398 CAAATATTGCAATATTCTATGGAGAATTCCCTGAGTCTCTAAGGAACACAGCGACTTCAT 1457
| ||||||||| ||||||||||||||||||| |||||||| |||||||| ||||| ||||
Sbjct 1376 CGAATATTGCAGTATTCTATGGAGAATTCCCGGAGTCTCTGAGGAACACCGCGACATCAT 1435
Query 1458 TGACCTCGGTGGTGATGGGAATCTCTTTCTATCTGA-GCACAGCTCTTATCGATGTGATC 1516
| ||||| |||||||| ||||||||||||||||| | |||||||| |||||||| |||||
Sbjct 1436 TAACCTCTGTGGTGATTGGAATCTCTTTCTATCT-ATGCACAGCTATTATCGATCTGATC 1494
Query 1517 CAGAGGACCACCAAGTGG 1534
||||||||||||||||||
Sbjct 1495 CAGAGGACCACCAAGTGG 1512
> Ahg484951 jgi|Araly1|484951|fgenesh2_kg.5__943__AT3G45680.1
Length=1839
Score = 1402 bits (759), Expect = 0.0
Identities = 1387/1681 (83%), Gaps = 79/1681 (5%)
Strand=Plus/Plus
Query 95 AGCAAGCATGGTGGCTGGATCACTTTACCGTTCATGCTCGTTACATTGTTAGGCATGTCG 154
||||||| ||||||||||||||||| ||||||||| ||| ||| ||||||||| | ||
Sbjct 98 AGCAAGCGCGGTGGCTGGATCACTTTTCCGTTCATGATCGCTACGTTGTTAGGCCTTTC- 156
Query 155 A-TAACTTATTTTGGATGGGTAATGAACTTGATCGTCTTCTTGATCGAGGAATTCAACAT 213
| | |||| ||| ||||||||||||||||||||||||||| | ||||| || ||||||||
Sbjct 157 AGTGACTTCTTTCGGATGGGTAATGAACTTGATCGTCTTCCTAATCGAAGAGTTCAACAT 216
Query 214 CAAGAGCATCGCAGCTGTTCAGATTTCAAATATTGTCAATGGAGT-TGTCAACATGTTGC 272
|||||||||||| |||| || ||||||||||||| ||||||| | | ||| ||||||||
Sbjct 217 CAAGAGCATCGCTGCTGCGCAAATTTCAAATATTGCCAATGGA-TGTCTCAGCATGTTGC 275
Query 273 CTGTTGTCGCAGCCATCCTAGCCGATTCCTTT-TTTGGGAACATTCCTGTCATC-TCAGC 330
||||||| |||||||| |||| || | |||| || ||||||||||| |||||| | ||
Sbjct 276 CTGTTGTTGCAGCCATTTTAGCTGACT-CTTTCTTCGGGAACATTCCCGTCATCGT-GGC 333
Query 331 CTCCGCTTTCATTTCTCTAAC-TGGAAT-ATCGCTCTTGACTCTTATTGCATCTTTGGAC 388
||| |||||||||||||| | ||| || || |||||||||||||||||||||||||||
Sbjct 334 CTCTGCTTTCATTTCTCT-GCTTGGCATCAT-TCTCTTGACTCTTATTGCATCTTTGGAC 391
Query 389 TATTTGAGACCTAGACCGTGTGAAACGGGATCAATTTTATGCCA-ATCACCATCAAAACT 447
|| |||||||| ||||||||| |||||| ||||| |||| || ||| |||||||||||
Sbjct 392 TACTTGAGACCCCGACCGTGTGGAACGGGGTCAATCCTATG-CACATCTCCATCAAAACT 450
Query 448 ACAACTTGGGATCTTGTATGCAGCCTTAGCTCTAGTGATCACTGGAACAGCTGGGACGCG 507
|| || ||||||||||||||||| ||||||||||| | ||||||| ||| |||||||||
Sbjct 451 CCAGCTCGGGATCTTGTATGCAGCATTAGCTCTAGTCACCACTGGATCAGGTGGGACGCG 510
Query 508 GTTCATCTTGGCATCCGCAGGTGCAAACCAATATAAGAAACCTAAAGAACAAGGAAGGTT 567
||||| | |||||||||| ||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 511 GTTCACCATGGCATCCGCGGGTGCAAACCAATATGAGAAGCCTAAAGAACAAGGAAGCTT 570
Query 568 CTTCAACTGGTACTTTTTCACACTATATGGTGGAGCGATTACTGGCACGACAGCAATTGT 627
||||||||||||||| |||||||||| |||||| ||||||||| | ||| |||||||
Sbjct 571 CTTCAACTGGTACTTCCTCACACTATACATTGGAGCTATTACTGGCGCAACATCAATTGT 630
Query 628 ATATGCACAGGACAATGCTAGCTGGAAGCTTGGATTCGGTCTCTGCGTC-GCTGCTAACT 686
|||| ||||||||||||||||||||| ||||| ||||||||||||| | |||||||| |
Sbjct 631 ATATATACAGGACAATGCTAGCTGGAAACTTGGGTTCGGTCTCTGCG-CTGCTGCTAATT 689
Query 687 TGATCAGTTTCATCA-TTTTCGTCGCTGGGAAGAGACT-CTACGAGCATGACCAACCTTT 744
||||||||||||| | |||| ||| ||||||||||| | |||| |||||||| |||| |
Sbjct 690 TGATCAGTTTCAT-AGTTTTTGTCTCTGGGAAGAGA-TACTACAAGCATGACAAACCAAT 747
Query 745 GGGAAGT-CCTTATACAAGTCTAG-TTCGCGTTTTAGTCGCTGCTACAATGAAACGAAAG 802
||||||| |||| || ||||| | | |||||| |||||||||||||| ||| | |||
Sbjct 748 GGGAAGTCCCTT-CACGAGTCT-GATCCGCGTTGTAGTCGCTGCTACAGCAAAAAGGAAG 805
Query 803 GCTGTGATTTCATACAAAGACGAAGACTATCATCACCGCGAGCTCGAAAAAGAGACCAAG 862
||| || | |||| |||||| |||||| | ||||||| | ||| | ||||||| || ||
Sbjct 806 GCTATGGTCTCATGCAAAGAAGAAGAC--T-ATCACCGTGGGCTGGGAAAAGAGGCC-AG 861
Query 863 -ACTTATGTTGCAATGCCCTCCAAGAGCTTCAGGTTCTTGAACCGTGCAGCATTGAAGAC 921
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 862 AACTTCTGTTGCAATGCCCTCCAAGAGCTTCAGGTTCTTGAACCGTGCAGCGTTGAAGAC 921
Query 922 AGAAG--GA-G-AC-TCAAA--------T-A-ATA--A-CATGTGGAGGCTATGCTCTGT 963
|||| || | | | ||| | | ||| | ||| |||||||||||||||||
Sbjct 922 CGAAGACGATGTAAATAAAAAAGACGGCTCAGATATTAACATATGGAGGCTATGCTCTGT 981
Query 964 TCAGGAAGTAGAAGATTTCAAAGCCGTTCTCCGACTTGTCCCTCTCTGGACATCTGTCAT 1023
|||||||||||||||||||||||| |||||||| || | ||||| ||| ||| ||||
Sbjct 982 ACAGGAAGTAGAAGATTTCAAAGCCATTCTCCGAGTTTTGCCTCTATGGTTATCCATCAT 1041
Query 1024 GTTCCTCAGCGCTCCCCTAGCGGTGCAAATGAGCATGACTGTCCTCCAAGCTATGGTCAT 1083
||| | || |||| | | | |||||| || ||| ||| ||||||||| | ||||
Sbjct 1042 CTTCGTTAGTACTCCTATGGTGATGCAAACAAGTTTGATTGTACTCCAAGCTCTAGTCAC 1101
Query 1084 GGACCGTAAACTTGGCCC-ACACTTCAAAGTCTCTGCTGGGTCTATGCAAGTCATAGCAC 1142
|||||| ||||| || | ||||||||||| | || || || | ||||| ||| |
Sbjct 1102 CGACCGTGGGCTTGGTCCTA-ACTTCAAAGTCCCGGCCGGTTCCCTCCAAGTAATAATAA 1160
Query 1143 TCGTCTCTGGATGCGTCT-TTATCATACTT-AACAACTGGACTAC-CTATCCCATGTATC 1199
|| || ||| |||| | | ||||||| | | ||||||||| || || ||| ||||| |
Sbjct 1161 TCATCACTGCATGCAT-TGTTATCAT-CATGAACAACTGG-CTTGTCTTTCCAATGTA-C 1216
Query 1200 A-GAAGCTAA-TCCGCAAACCGCTGACACCGCTACAAAAAGTCGGGATCGGCCACGTTTT 1257
| |||||||| || | || |||||||||||| ||||||||||| || ||||| ||| |
Sbjct 1217 AAGAAGCTAACTCAG-AAGTTGCTGACACCGCTGCAAAAAGTCGGTATAGGCCAGGTTCT 1275
Query 1258 GACAAT-CTTAAGCATGGCGA-TATCAGCCGTTGTTGAAGCAAAGAGGCTGAAAACAGTT 1315
|| || |||| ||||||| | | || || ||||| ||||||||||| ||||||||||||
Sbjct 1276 CACCATTCTTA-GCATGGC-ACTCTCTGCGGTTGTGGAAGCAAAGAGACTGAAAACAGTT 1333
Query 1316 GAAAAT-AGCCATC-TCATGTCAGTGCTATGGCTGGTTCCTGCTCTCGTGATTAAT-GGA 1372
|||||| ||| ||| | ||||||||| ||||| || ||||| | || ||||| | | ||
Sbjct 1334 GAAAATGAGC-ATCCT-ATGTCAGTGTTATGGTTGTTTCCTCCCCTTGTGAT-AGTAGGT 1390
Query 1373 ATAGGTGAGGCCTTTCATTTTCCAGCAAATATTGCAAT-ATTCTATGGAGAATTCCCTGA 1431
|||||||| |||||||| ||||| || ||||||| ||| ||| |||||||||||||| ||
Sbjct 1391 ATAGGTGAAGCCTTTCAATTTCCGGCGAATATTG-AATTATTTTATGGAGAATTCCCCGA 1449
Query 1432 GTCTCTAAGGAACACAGCGACTTCATTGACCTCGGTGGTGATGGGAATCTCTTTCTATCT 1491
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1450 GTCTCTGAGGAACACTGCGACTTCATTGACCTCGGTGGTGATTGGAATCTCTTTCTATCT 1509
Query 1492 GAGCACAGCTCTTATCGATGTGATCCAGAGGACCACCAAGTGGTTACCAAATGACATAAA 1551
|||||||||||||||||| | ||||| |||||||| |||||||||||||||||||||
Sbjct 1510 AAGCACAGCTCTTATCGATCTTATCCACAGGACCACTGCGTGGTTACCAAATGACATAAA 1569
Query 1552 CCACGGAAGGGTTGACAATGTTTACTTGG-TATTAGTCATTATAGGAGTCTCT-AATTTC 1609
||||||||| || ||||||||||||| || | ||||||||| |||| ||| | ||||||
Sbjct 1570 CCACGGAAGAGTGGACAATGTTTACT-GGATTTTAGTCATTGGAGGAATCT-TGAATTTC 1627
Query 1610 GGCTACTTCCTTGTCTGCTCTTGGTTTTACAAATACAGAAACCTCAAGAATGATGATCAT 1669
|||||||||||||| || |||||| | ||||||||||||||||||||| ||||||||||
Sbjct 1628 GGCTACTTCCTTGTGTGTTCTTGGGTCTACAAATACAGAAACCTCAAGTGTGATGATCAT 1687
Query 1670 GAACAAGATCTTAAAGATGTTACAAAC-TAG-GACACTAACGTGTTCTGTCCTCGTTTTC 1727
|||||||||| ||||||||||||| | || ||| | ||| |||||||| || ||| ||
Sbjct 1688 GAACAAGATCCAAAAGATGTTACAA-CGTAAAGACTC-AACATGTTCTGTTCTAGTTCTC 1745
Query 1728 T 1728
|
Sbjct 1746 T 1746
> Ahg937250 jgi|Araly1|937250|scaffold_501441.1
Length=1134
Score = 483 bits (261), Expect = 3e-135
Identities = 681/876 (78%), Gaps = 59/876 (7%)
Strand=Plus/Plus
Query 419 TCAATTTTATGCCAATCACCATCAAAACTACAACTTGGGATCTTGTATGCAGCCTTAGCT 478
||||| |||||||||| ||||||||||| || || |||||||||||||||||||||||
Sbjct 34 TCAATCCTATGCCAATCCCCATCAAAACTCCACCTCCGGATCTTGTATGCAGCCTTAGCT 93
Query 479 CTAGTGATCACTGGAACAGCTGGG--ACGCGGT-TCATCTTGGCATCCGCAGGTGCAAAC 535
||||||| | ||||||| |||||| | | ||| | | |||||||| || |||||||||
Sbjct 94 CTAGTGACCGCTGGAACTGCTGGGATAAG-GGTGGC-T-TTGGCATCTGCGGGTGCAAAC 150
Query 536 CAATATAAGAAACCTAAAGA-AC-AAGGAAGGTTCTTCAACTGGTACTT-TTTCACACTA 592
|||||| | |||||| ||| || |||||| ||||||||||||||||| ||| || ||
Sbjct 151 CAATATGATAAACCT--AGACACAAAGGAACCTTCTTCAACTGGTACTTCTTT-ACGGTA 207
Query 593 TATGGTGGAGCGATTACTGGCACGACAGCAATTGTATATGCACAGGACAATGCTAGCTGG 652
|| || || |||| | || ||||| ||||||| ||| | ||||| || |||||||||
Sbjct 208 AATACAGGCGCAATTATTAGCGCGACATCAATTGTGTATACGCAGGAGAACGCTAGCTGG 267
Query 653 AAGCTTGGATTCGGTCTCTGCGTC-GCTGCTAACTTGATCAGTTTCATCA-TTTTCGTCG 710
||||| || |||||||| || | | |||||||| |||||||||||||| | |||| ||
Sbjct 268 AAGCTCGGGTTCGGTCTTTGTG-CAGCTGCTAATTTGATCAGTTTCAT-AGTTTTTATCT 325
Query 711 CTGGGAAGAGACTCTACGAGCATGACCAACCTTTGGGAAGT-CCTTATACAAGTCTAG-T 768
| ||||||||| ||||| |||||||| |||| |||||||| |||| ||||| || | |
Sbjct 326 CCGGGAAGAGATTCTACAAGCATGACAAACCAATGGGAAGTCCCTT-CACAAGCCT-GAT 383
Query 769 TCGCGTTTTAGTCGCTGCTACAATGAAACGAAAGGCTGTGATTTCATAC-AAAGACGAAG 827
||||||||||||||||||| | ||||| ||| ||||| || || | | ||||| ||||
Sbjct 384 CCGCGTTTTAGTCGCTGCTATACTGAAAATAAAAGCTGTTATATC-TTCTAAAGAAGAAG 442
Query 828 ACTATCATCACCGCGAGCTCGAAAAAGA-GACCAAGACTTATGTTGCAATGCCCTCCAAG 886
| | | ||||||| ||||| |||||||| | |||||||| |||| |||||| ||||||
Sbjct 443 A-T-T-ATCACCGGGAGCTAGAAAAAGATG-GCAAGACTTCCGTTGGAATGCCTTCCAAG 498
Query 887 AGCTTCAGGTTCTTGAACCGTGCAGCATTGAAGAC--A-GA--A-------G-GA--GAC 931
||||||||||||||||||||||||||||||||||| | || | | || |||
Sbjct 499 AGCTTCAGGTTCTTGAACCGTGCAGCATTGAAGACTGATGAGGACTTAAATGAGAAAGAC 558
Query 932 ---TCAAATAATAACATGTGGAGGCTATGCTCTGTTCAGGAAGTAGAAGATTTCAAAGCC 988
||| ||||||||| ||||||||||| |||||| |||||||||||||||| ||| |
Sbjct 559 GGCTCAGTTAATAACATCTGGAGGCTATGTTCTGTTGAGGAAGTAGAAGATTTGAAATCT 618
Query 989 GTTCTCCGACTTGTCCCTCTCTGGACATCTGT-CATGTTCCTCAGCGCTCCCCTAGCGGT 1047
|||||| || || ||||||| ||| | | | | | ||| | | | || | | | |
Sbjct 619 GTTCTCAGAGTTCTCCCTCTATGGTTAGCAATTC-TATTCGTTGGAAATTCCATTG-GTT 676
Query 1048 G-CAAATGAGCATGACTGTCCTCCAAGCTATGGTCATGGACCGTAA-ACTTGGCCC-ACA 1104
||| |||||||| || || |||||| |||| | ||||| | ||| ||| | | |
Sbjct 677 TTCAAGCAAGCATGACGGTTCTACAAGCTCTGGTAACAGACCG-AGGACTCGGCTCTAGA 735
Query 1105 CTTCAAAGTCTCTG-CTGGGTCTA-TGCAAGTCATAGCACTCGTCTC-TGGATGCGTCTT 1161
|||||||| || | | ||||| | ||||||| |||| |||| |||| | |||||||||
Sbjct 736 -TTCAAAGT-TCCGGCCGGGTC-ACTGCAAGTAATAGTACTCATCTCATC-ATGCGTCTT 791
Query 1162 TATCATACTTAACAACTGGACTACCTATCCCATGTATCAGAAGCTAATCCGCAAACCGCT 1221
| | | || || |||||||||| |||||||||||||||||| ||| || |||| |||
Sbjct 792 TCTTGTGCTCAATAACTGGACTATGTATCCCATGTATCAGAAGATAACCCATAAACAGCT 851
Query 1222 GACACCGCTACAAAAAGTCGGGATCGGCCACGTTTT 1257
|||||||| ||| ||||||| || ||||| |||||
Sbjct 852 AACACCGCTTCAACAAGTCGGTATAGGCCAAGTTTT 887
> Ahg937247 jgi|Araly1|937247|scaffold_501438.1
Length=441
Score = 357 bits (193), Expect = 2e-97
Identities = 249/276 (90%), Gaps = 4/276 (1%)
Strand=Plus/Plus
Query 1323 GCCATCTCATGTCAGTGCTATGGCTGGTTCCTGCTCTCGTGATTA-ATGGAATAGGTGAG 1381
||| ||||||||||||| |||||||| ||||||||||||||| || ||| ||||| |||
Sbjct 128 GCCGTCTCATGTCAGTGATATGGCTGTTTCCTGCTCTCGTGA-TAGTTGGGATAGGCGAG 186
Query 1382 GCCTTTCATTTT-CCAGCAAATATTGCAATATTCTATGGAGAATTCCCTGAGTCTCTAAG 1440
|||||||||||| ||| | | ||||||||||||||||||||||||||||||||| || ||
Sbjct 187 GCCTTTCATTTTCCCA-CGAGTATTGCAATATTCTATGGAGAATTCCCTGAGTCCCTGAG 245
Query 1441 GAACACAGCGACTTCATTGACCTCGGTGGTGATGGGAATCTCTTTCTATCTGAGCACAGC 1500
||| || |||||||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 246 GAATACTGCGACTTCATTGACCTCGTTGGTGATGGGAATCTCTTTCTATCTGTGCACTGC 305
Query 1501 TCTTATCGATGTGATCCAGAGGACCACCAAGTGGTTACCAAATGACATAAACCACGGAAG 1560
|||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCTTATTGATCTGATCCAGAGAACCACCAAGTGGTTACCAAATGACATAAACCACGGAAG 365
Query 1561 GGTTGACAATGTTTACTTGGTATTAGTCATTATAGG 1596
||||||||||| |||| ||| ||||||||| ||||
Sbjct 366 AGTTGACAATGTCTACTGGGTTTTAGTCATTTTAGG 401
Score = 84.2 bits (45), Expect = 3e-15
Identities = 93/114 (82%), Gaps = 12/114 (11%)
Strand=Plus/Plus
Query 35 TTCCACTTGTTCTCTGCCATGGCTAATTCAGACTCTGGTGACAAAGAAGCGC---A-TC- 89
|||| ||| ||||||||||||||| ||||| ||| | ||||||||||||||| | ||
Sbjct 4 TTCCTCTTATTCTCTGCCATGGCTGATTCAAACTTTAGTGACAAAGAAGCGCATTACTCT 63
Query 90 -GC--T-C---TAGCAAGCATGGTGGCTGGATCACTTTACCGTTCATGCTCGTT 136
|| | | ||| |||| |||||||||||||||||||||||||||||| |||
Sbjct 64 AGCGATCCAAGTAGAAAGCGTGGTGGCTGGATCACTTTACCGTTCATGCTTGTT 117
> Ahg347652 jgi|Araly1|347652|fgenesh1_pg.C_scaffold_5001044
Length=1680
Score = 235 bits (127), Expect = 8e-61
Identities = 290/365 (79%), Gaps = 25/365 (7%)
Strand=Plus/Plus
Query 1330 CATGTCAGTGC-TATGGCTGGTT-CCTGCTCTCGTGATTAAT-GGAATAGGTGAGGCCTT 1386
||||||||| | | ||| | || ||| |||| || | || | ||||| || ||||||||
Sbjct 1311 CATGTCAGT-CTTGTGG-TTATTCCCTCCTCTAGTCA-TAGTAGGAATCGGAGAGGCCTT 1367
Query 1387 TCATTTTCCAGCAAATATTGCAATATTCTATGGAGAATTCCCTGAGTCTCTAAGGAA-CA 1445
||||| |||| ||| | || ||| |||| |||||| || |||||| | | ||| |
Sbjct 1368 CCATTTCCCAGGGAATGTAGCTCTATGCTATCAAGAATTTCCAGAGTCTATGA-GAAGCC 1426
Query 1446 CAGCGACTTC-ATTGACCTCGGTGGTGA-TGGGAATCT-CTTTCTATC-TGAGCACAGCT 1501
| || || || | | ||||||||||||| |||| || | | ||||| | ||||| |||
Sbjct 1427 CCGCAACATCGA-TCACCTCGGTGGTGATTGGG-ATATGC-TTCTA-CACAAGCACTGCT 1482
Query 1502 CTT-ATCGATGTGATCCAGAGGACCACCAAGTGGTTACCAAATGACATAAACCACGGAAG 1560
|| |||||| |||| |||||||| ||| |||||||||| ||||||||||||| |||||
Sbjct 1483 -TTGATCGATCTGATTCAGAGGACAACCGCGTGGTTACCAGATGACATAAACCATGGAAG 1541
Query 1561 GGTTGACAATGTTTACTTGGTATTAGTCATTA-TAGGAGTCTCT-AAT-TTCGGCTACTT 1617
|||||||||||||||| ||| ||||| | || |||||||| | ||| || ||||| ||
Sbjct 1542 AGTTGACAATGTTTACTGGGTTTTAGTTA-TAGGAGGAGTCT-TGAATCTT-GGCTATTT 1598
Query 1618 CCTTGTCTGCTCTTGGTTTTACAAATACAGAAACCTCAAGAATGATGATCATGAACAAGA 1677
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1599 TCTTGTGTGTTCTTGGTTTTACAAATACAGAAACCTCAAGAATGATGATCATGAGCAAGA 1658
Query 1678 T-CTT 1681
| |||
Sbjct 1659 TGCTT 1663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68676711735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5