BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45710.1
Length=1877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897373 jgi|Araly1|897373|Al_scaffold_0005_1339 2084 0.0
Ahg484951 jgi|Araly1|484951|fgenesh2_kg.5__943__AT3G45680.1 1395 0.0
Ahg484953 jgi|Araly1|484953|fgenesh2_kg.5__945__AT3G45690.1 896 0.0
Ahg323231 jgi|Araly1|323231|fgenesh1_pm.C_scaffold_5000775 409 5e-113
Ahg347652 jgi|Araly1|347652|fgenesh1_pg.C_scaffold_5001044 302 8e-81
Ahg937247 jgi|Araly1|937247|scaffold_501438.1 124 2e-27
> Ahg897373 jgi|Araly1|897373|Al_scaffold_0005_1339
Length=1530
Score = 2084 bits (1128), Expect = 0.0
Identities = 1389/1516 (92%), Gaps = 14/1516 (1%)
Strand=Plus/Plus
Query 77 ATGGCTGATTCAAAATCTGGTGACACGGAAGTAGCGCATCGCTCTAGCGATCCAAGCGAA 136
|||||||||||||| || |||||||| || |||||||||||||||||||||||||| |
Sbjct 1 ATGGCTGATTCAAACTCCGGTGACAC---AGAAGCGCATCGCTCTAGCGATCCAAGCGGA 57
Query 137 AAGCGTGGTGGCTGGATCACTTTACCGTTCATGCTAGTTACATTATTAGGCATGTCCATA 196
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 58 AAGCGTGGTGGCTGGATCACTTTACCGTTCATGCTCGTTACATTGTTAGGCATGTCCATA 117
Query 197 ACTTCTTTCGGATGGGGAATGAACTTGATCGTCTTCTTGATCGAGGAATTCCACATCAAG 256
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 118 ACTTCTTTCGGATGGGGAATGAACTTGATCGTCTTCTTGATCGAGGAATTCAATATCAAG 177
Query 257 AACATCGCTGCTGCTCAGATTTCAAATGTTGTCAATGGAGTTGTCAACATGTTACCTGTT 316
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 178 AACATCGCTGCTGCTCAGATTTCAAATATTGTCAATGGAGTTGTCAACATGTTGCCTGTT 237
Query 317 GTTGCAGCCATCCTAGCTGATTCCTTTTTTGGGAACATTCCCGTCATCTCCACCTCCACT 376
||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||
Sbjct 238 GTTGCAGCCATCCTAGCCGATTCCTTTTTCGGGAACATTCCCGTCATCTCGGCTTCCGCT 297
Query 377 TTCATTTCTCTGGCTGGAACCTCTCTCTTGACCTTAATCACATCTTTGAACTACTTGATG 436
||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 298 TTCATTTCTTTGACTGGAGTCTCTCTCTTGACCTTAATCACATCTTTGGACTACTTGATA 357
Query 437 CCTAGACCGTGTGAAACGGGGTCAATTCTATGCCAGTCGCCATCAAAACTACAGCTTGGG 496
||||||||||||||||| || ||||| |||||||| ||||||||||||||||| || ||
Sbjct 358 CCTAGACCGTGTGAAACAGGCTCAATCCTATGCCAATCGCCATCAAAACTACAACTCGGA 417
Query 497 ATCTTGTATGTAGCCTTAGCTCTAGTGATCATTGGATCAGCTGGGACGCGGTTCACCTTG 556
|||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 418 ATCTTGTATGCAGCCTTAGCTCTAGTAATTGTTGGATCAGCTGGGACGCGGTTCACCTTG 477
Query 557 GCAGCCGCGGGTGCGAACCAATATAAGAAGCCTAAAGAACAAGGAAGATTCTTCAACTGG 616
|||||||| |||||||||||||||||||| || |||||||||||| | ||||||||||||
Sbjct 478 GCAGCCGCAGGTGCGAACCAATATAAGAAACCGAAAGAACAAGGACGCTTCTTCAACTGG 537
Query 617 TTCTTCCT-TGCACTGTATATTGGAGCTATTACTGGCACGACAGCGATTGTATATACACA 675
|||||||| | || | |||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 538 TTCTTCCTCT-CATTATATACCGGAGCGATTACTGGCACGACAGCAATTGTATATACACA 596
Query 676 AGACAATGCTAGCTGGAAACTTGGGTTCGGTCTATGTGCCGTTGCTAACTTGATCAGTTT 735
|||||||||||||||||||||||||| ||||| ||||||| |||||| |||||||||||
Sbjct 597 GGACAATGCTAGCTGGAAACTTGGGTTTGGTCTCTGTGCCGCTGCTAATTTGATCAGTTT 656
Query 736 CATCGTTTTCATCGCCGGGGTTAGATTCTACAAGCATGACAAACCCTTGGGAAGTCCTTA 795
|||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 657 CATCGTTTTCATTGCCGGGAAGAGATTCTACAAGCATGATAAACCCTTGGGAAGTCCATA 716
Query 796 TACAAGCCTGATCCGTGTTTTAGTTGCTGCTACAATGAAAAGAAAGGC-AGTGATTTCAT 854
|||||||||||| || ||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 717 TACAAGCCTGATACGCGTTTTAGTTTCTGCTACAATGAAAAGAAAGGCTA-TGATTTCAT 775
Query 855 CAAAAGACGAAGACTATCATCAATATGGTCTCGGGAAAGAGGCCAAGACTTATACTACAA 914
|||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||
Sbjct 776 CAAAAGACGAAGACTATCATCACTATGGTCTCAAAAAAGAGGCCAAGACTTCTACTACAA 835
Query 915 TGCCCTCCAAGAGCTTTAGGTTCTTGAACCGTGCAGCATTAAAGAACAAAGAAGATTTAA 974
|||||||||||||||| ||||||||||||||||||||||| |||| | ||||||||||||
Sbjct 836 TGCCCTCCAAGAGCTTCAGGTTCTTGAACCGTGCAGCATTGAAGACCGAAGAAGATTTAA 895
Query 975 ACACGAGTGGTGACTCAAGTAATAACATGTGGAGGCTATGCTCTGTTCAGGAAGTAGAAG 1034
|| |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 896 ACCCGAGCGGTGACTCAATTAATAACATGTGGAGGCTATGCTCTGTTCAAGAAGTAGAAG 955
Query 1035 ACTTCAAAGCCATTCTCCGACTTGTACCTCTCTGGGCAGCCGTCATGTTCCTCAGCACTC 1094
| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 956 ATTTCAAAGCCGTTCTACGACTTGTCCCTCTCTGGGCAGCCGTCATGTTCCTCAGCACTC 1015
Query 1095 CCGTGGCAGTACAAATGAGCATGACGGTTCTCCAAGCTTTGGTCATGGACCGCAAACTTA 1154
| |||||||| |||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 1016 CTGTGGCAGTGCAAATGAGTATGACGGTCCTCCAAGCTTTGGTCATGGACCGCGAACTTG 1075
Query 1155 GCCCGCACTTCGAAGTCTCTGCCGGGTCTCTACAAGTCATAGTACTCGTCTTTGGTTGTG 1214
||||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||| ||||
Sbjct 1076 GCCCGCACTTCAAAGTCTCTGCCGGGTCTCTGCAAGTCATAGTACTCATCTCTGGATGTG 1135
Query 1215 TCTTTATCATGCTCAACAACTGGATCATCTATCCCATGTACCAAAAGCTAATCGGCAAAC 1274
||||||||||| ||||||||||||| ||||||||||||||||| |||||| || ||||||
Sbjct 1136 TCTTTATCATGGTCAACAACTGGATTATCTATCCCATGTACCAGAAGCTATTCCGCAAAC 1195
Query 1275 CACTGACACCACTTCAACAAGTTGGGATCGGTCACGTTTTCACCATCCTAAGCATGGCGA 1334
|||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 1196 CACTGACACCGCTTCAACAAGTTGGGATTGGCCACGTTTTGACCATCCTAAGCATGGCGA 1255
Query 1335 TATCAGCTGTTGTGGAAGCAAAGAGACTGAAAACAGTTGAAAATGGAGGCCATCCCATGT 1394
||||||| |||||||||||| ||| |||||||||||||||||||| || ||| ||||
Sbjct 1256 TATCAGCCATTGTGGAAGCAAGGAGGCTGAAAACAGTTGAAAATGG---CCGTCCTATGT 1312
Query 1395 CAGTGCTATGGCTAGTTCCTGCTCTTGTGATGGTTGGAATAGGCGAGGCGTTTCATTTTC 1454
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1313 CAGTGCTATGGCTAGTTCCTGCTCTCGTGATGGTTGGAATAGGCGAGGCCTTTCATTTTC 1372
Query 1455 CCGCGAATGTTGCAGTATTCTATGGAGAATTCCCTGAGTCTCTGAAGAACACCGCAACTT 1514
|||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || |
Sbjct 1373 CCGCGAATATTGCAGTATTCTATGGAGAATTCCCGGAGTCTCTGAGGAACACCGCGACAT 1432
Query 1515 CATTGACCTCAGTGGTGATTGGAATCTCTTTCTATCTGA-GCACAGCTGTTATCGA-CGT 1572
|||| ||||| |||||||||||||||||||||||||| | |||||||| ||||||| | |
Sbjct 1433 CATTAACCTCTGTGGTGATTGGAATCTCTTTCTATCT-ATGCACAGCTATTATCGATC-T 1490
Query 1573 GATCCAAAGAACCACC 1588
|||||| || ||||||
Sbjct 1491 GATCCAGAGGACCACC 1506
> Ahg484951 jgi|Araly1|484951|fgenesh2_kg.5__943__AT3G45680.1
Length=1839
Score = 1395 bits (755), Expect = 0.0
Identities = 1400/1707 (82%), Gaps = 62/1707 (4%)
Strand=Plus/Plus
Query 117 GCTCTAGCGATCCAAGCGAA--AAGCGTGGTGGCTGGATCACTTTACCGTTCATGCTAGT 174
||||| ||||||||| ||| ||||| ||||||||||||||||| ||||||||| | |
Sbjct 81 GCTCTGGCGATCCAA--GAAGCAAGCGCGGTGGCTGGATCACTTTTCCGTTCATGATCGC 138
Query 175 TACATTATTAGGCATGTCCA-TAACTTCTTTCGGATGGGGAATGAACTTGATCGTCTTCT 233
||| || |||||| | | || | |||||||||||||||| |||||||||||||||||||
Sbjct 139 TACGTTGTTAGGCCT-TTCAGTGACTTCTTTCGGATGGGTAATGAACTTGATCGTCTTCC 197
Query 234 TGATCGAGGAATTCCACATCAAGAACATCGCTGCTGCTCAGATTTCAAATGTTGTCAATG 293
| ||||| || ||| ||||||||| |||||||||||| || ||||||||| ||| |||||
Sbjct 198 TAATCGAAGAGTTCAACATCAAGAGCATCGCTGCTGCGCAAATTTCAAATATTGCCAATG 257
Query 294 GAGT-TGTCAACATGTTACCTGTTGTTGCAGCCATCCTAGCTGATTCCTTT-TTTGGGAA 351
|| | | ||| |||||| ||||||||||||||||| ||||||| | |||| || |||||
Sbjct 258 GA-TGTCTCAGCATGTTGCCTGTTGTTGCAGCCATTTTAGCTGACT-CTTTCTTCGGGAA 315
Query 352 CATTCCCGTCATC-TCCACCTCCACTTTCATTTCTCTGGC-TGG-AACCTCTCTCTTGAC 408
||||||||||||| | |||| ||||||||||||| || ||| | | | |||||||||
Sbjct 316 CATTCCCGTCATCGT-GGCCTCTGCTTTCATTTCTCT-GCTTGGCATCAT-TCTCTTGAC 372
Query 409 -CTTAATCACATCTTTGAACTACTTGATG-CCTAGACCGTGTGAAACGGGGTCAATTCTA 466
||| || |||||||| ||||||||| | || ||||||||| |||||||||||| |||
Sbjct 373 TCTT-ATTGCATCTTTGGACTACTTGA-GACCCCGACCGTGTGGAACGGGGTCAATCCTA 430
Query 467 TGC-CAGTCGCCATCAAAACTACAGCTTGGGATCTTGTATGTAGCCTTAGCTCTAGTGAT 525
||| || || ||||||||||| ||||| ||||||||||||| ||| ||||||||||| |
Sbjct 431 TGCACA-TCTCCATCAAAACTCCAGCTCGGGATCTTGTATGCAGCATTAGCTCTAGTCAC 489
Query 526 CATTGGATCAGCTGGGACGCGGTTCACCTTGGCAGCCGCGGGTGCGAACCAATATAAGAA 585
|| |||||||| |||||||||||||||| ||||| |||||||||| ||||||||| ||||
Sbjct 490 CACTGGATCAGGTGGGACGCGGTTCACCATGGCATCCGCGGGTGCAAACCAATATGAGAA 549
Query 586 GCCTAAAGAACAAGGAAGATTCTTCAACTGGTTCTTCCTTGCACTGTATATTGGAGCTAT 645
|||||||||||||||||| ||||||||||||| |||||| |||| || |||||||||||
Sbjct 550 GCCTAAAGAACAAGGAAGCTTCTTCAACTGGTACTTCCTCACACTATACATTGGAGCTAT 609
Query 646 TACTGGCACGACAGCGATTGTATATACACAAGACAATGCTAGCTGGAAACTTGGGTTCGG 705
||||||| | ||| | |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 610 TACTGGCGCAACATCAATTGTATATATACAGGACAATGCTAGCTGGAAACTTGGGTTCGG 669
Query 706 TCTATGTGCCGTTGCTAACTTGATCAGTTTCATCGTTTTCATCGCCGGGGTTAGATTCTA 765
||| || || | |||||| |||||||||||||| ||||| || | ||| |||| |||
Sbjct 670 TCTCTGCGCTGCTGCTAATTTGATCAGTTTCATAGTTTTTGTCTCTGGGAAGAGATACTA 729
Query 766 CAAGCATGACAAACCCTTGGGAAGT-CCTTATACAAGCCTGATCCGTGTTTTAGTTGCTG 824
||||||||||||||| |||||||| |||| || || |||||||| ||| |||| ||||
Sbjct 730 CAAGCATGACAAACCAATGGGAAGTCCCTT-CACGAGTCTGATCCGCGTTGTAGTCGCTG 788
Query 825 CTACAATGAAAAGAAAGGC-AGTGATTTCAT-CAAAAGACGAAGACTATCATCAATATGG 882
||||| ||||| ||||| | || | |||| | ||||| ||||||||||| | |||
Sbjct 789 CTACAGCAAAAAGGAAGGCTA-TGGTCTCATGC-AAAGAAGAAGACTATCA-C--CGTGG 843
Query 883 TCTCGGG-AAAGAGGCCAAG-ACTTATACTACAATGCCCTCCAAGAGCTTTAGGTTCTTG 940
|| ||| ||||||||| || |||| | | ||||||||||||||||||| |||||||||
Sbjct 844 GCT-GGGAAAAGAGGCC-AGAACTTCTGTTGCAATGCCCTCCAAGAGCTTCAGGTTCTTG 901
Query 941 AACCGTGCAGCATTAAAGAACAAAGAAGATTTAAACACGAGTGGTGACTCAAG-TAATAA 999
||||||||||| || |||| | |||| ||| |||| | | | | ||| || || |||
Sbjct 902 AACCGTGCAGCGTTGAAGACCGAAGACGATGTAAATAAAAAAGACGGCTC-AGATATTAA 960
Query 1000 CATGTGGAGGCTATGCTCTGTTCAGGAAGTAGAAGACTTCAAAGCCATTCTCCGACTTGT 1059
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| || |
Sbjct 961 CATATGGAGGCTATGCTCTGTACAGGAAGTAGAAGATTTCAAAGCCATTCTCCGAGTTTT 1020
Query 1060 ACCTCTCTGGGCAGCCGTCATGTTCCTCAGCACTCCCGTGGCAG-TACAAATGAGCATGA 1118
||||| ||| | || |||| ||| | || ||||| ||| | | |||| || |||
Sbjct 1021 GCCTCTATGGTTATCCATCATCTTCGTTAGTACTCCTATGG-TGATGCAAACAAGTTTGA 1079
Query 1119 CGGTTCTCCAAGCTTTGGTCATGGACCGCAAACTTAGCCCGCACTTCGAAGTCTCTGCCG 1178
|| ||||||||| | |||| ||||| ||| | || ||||| ||||| | ||||
Sbjct 1080 TTGTACTCCAAGCTCTAGTCACCGACCGTGGGCTTGGTCCTAACTTCAAAGTCCCGGCCG 1139
Query 1179 GGTCTCTACAAGTCATAGTACTCGTCTTTGGTTGTGTCT-TTATCATGC-TCAACAACTG 1236
| || || ||||| ||| || || || || || | | ||||||| | | ||||||||
Sbjct 1140 GTTCCCTCCAAGTAATAATAATCATCACTGCATGCAT-TGTTATCAT-CATGAACAACTG 1197
Query 1237 GATCATCTATCCCATGTACCAA-AAGCTAA-TCGGCAAACCACTGACACCACTTCAACAA 1294
| | ||| ||| ||||| ||| ||||||| || | || |||||||| || ||| ||
Sbjct 1198 GCTTGTCTTTCCAATGTA-CAAGAAGCTAACTCAG-AAGTTGCTGACACCGCTGCAAAAA 1255
Query 1295 GTTGGGATCGGTCACGTTTTCACCATCCTAAGCATGGCGA-TATCAGCTGTTGTGGAAGC 1353
|| || || || || ||| ||||||| || |||||||| | | || || |||||||||||
Sbjct 1256 GTCGGTATAGGCCAGGTTCTCACCATTCTTAGCATGGC-ACTCTCTGCGGTTGTGGAAGC 1314
Query 1354 AAAGAGACTGAAAACAGTTGAAAATGGAGGCCATCCCATGTCAGTGCTATGGCTAGTT-C 1412
|||||||||||||||||||||||||| || | |||| ||||||||| ||||| | ||| |
Sbjct 1315 AAAGAGACTGAAAACAGTTGAAAATG-AG-C-ATCCTATGTCAGTGTTATGGTT-GTTTC 1370
Query 1413 CTGCTCTTGTGATGGTTGGAATAGGCGAGGCGTTTCATTTTCCCGCGAATGTTGCAGTAT 1472
|| | |||||||| || || ||||| || || ||||| ||||| |||||| ||| | |||
Sbjct 1371 CTCCCCTTGTGATAGTAGGTATAGGTGAAGCCTTTCAATTTCCGGCGAATATTGAATTAT 1430
Query 1473 TCTATGGAGAATTCCCTGAGTCTCTGAAGAACACCGCAACTTCATTGACCTCAGTGGTGA 1532
| |||||||||||||| |||||||||| |||||| || |||||||||||||| |||||||
Sbjct 1431 TTTATGGAGAATTCCCCGAGTCTCTGAGGAACACTGCGACTTCATTGACCTCGGTGGTGA 1490
Query 1533 TTGGAATCTCTTTCTATCTGAGCACAGCTGTTATCGA-CGTGATCCAAAGAACCACCT-C 1590
||||||||||||||||||| ||||||||| ||||||| | | ||||| || ||||| | |
Sbjct 1491 TTGGAATCTCTTTCTATCTAAGCACAGCTCTTATCGATCTT-ATCCACAGGACCAC-TGC 1548
Query 1591 GTGGTTACCAAATGACATAAACCATGGAAGAGTTGACAATGTTTACTGGGTTGTAGTCAT 1650
|||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||
Sbjct 1549 GTGGTTACCAAATGACATAAACCACGGAAGAGTGGACAATGTTTACTGGATTTTAGTCAT 1608
Query 1651 AGGAGGAGTCTTGAATCTCGGCTATTTCCTTGTCTGCTCTTGGTTTTACAAATACAGAAA 1710
|||||| |||||||| ||||||| |||||||| || |||||| | ||||||||||||||
Sbjct 1609 TGGAGGAATCTTGAATTTCGGCTACTTCCTTGTGTGTTCTTGGGTCTACAAATACAGAAA 1668
Query 1711 CCTCAAG-GATGATGATCATGAACAAGATCCTAAAGATGTTAAAACCTAG-GACACAACA 1768
||||||| | ||||||||||||||||||||| |||||||||| ||| || ||| |||||
Sbjct 1669 CCTCAAGTG-TGATGATCATGAACAAGATCCAAAAGATGTTACAACGTAAAGACTCAACA 1727
Query 1769 TGTTGTTTTCCTAGTTTTCTTTGCATT 1795
|||| | ||| ||||| ||||||||||
Sbjct 1728 TGTTCTGTTC-TAGTTCTCTTTGCATT 1753
> Ahg484953 jgi|Araly1|484953|fgenesh2_kg.5__945__AT3G45690.1
Length=1545
Score = 896 bits (485), Expect = 0.0
Identities = 1046/1310 (80%), Gaps = 66/1310 (5%)
Strand=Plus/Plus
Query 92 TCTGGTGACACGGAAGTAGC-GCATCGCTCTAGCGATCCAAGCGA-AAAGCGTGGTGGCT 149
||||||||| | ||||| | | | | |||| ||||| ||||| | || || |||||||
Sbjct 16 TCTGGTGACTCAGAAGT-TCAG-A-C-CTCTCGCGATTCAAGC-AGCAATCGCGGTGGCT 70
Query 150 GGATCACTTTACCGTTCATGCTAGTTACATTATTAGGCATGTCCATAACTTCTTTCGGAT 209
||| ||||| || |||||| | | ||| || |||||| |||||||| |||| |||||||
Sbjct 71 GGAAAACTTTTCCATTCATGATCGCTACGTTGTTAGGCCTGTCCATAGCTTCATTCGGAT 130
Query 210 GGGGAATGAACTTGA-TCGTCTTCTTGATCGAGGAATTCCACATCAAGAACATCGCTGCT 268
||| ||||||||| | |||||||| | ||||| | |||| ||||||||| ||||||||||
Sbjct 131 GGGTAATGAACTT-AGTCGTCTTCCTAATCGATGTATTCAACATCAAGAGCATCGCTGCT 189
Query 269 GCTCAGATTTCAAATGTTGTCAATGGAGT-TGTCAACATGTTACCTGTTGTTGCAGCCAT 327
| |||||||||||| |||| |||||| | ||| | |||||| |||||||||||||||||
Sbjct 190 ACGCAGATTTCAAATATTGTTAATGGA-TGTGTGAGCATGTTGCCTGTTGTTGCAGCCAT 248
Query 328 CCTAGCTGATTCCTTT-TTTGGGAACATTCCCGTCATCTCCACCTCCACTTTCATTTCTC 386
|||||||||| |||| || || ||||| ||||||||||| || | |||||||||
Sbjct 249 TCTAGCTGATT-CTTTCTTCGGAAACATACCCGTCATCTCGGTGTCTGCCTTCATTTCT- 306
Query 387 TGGC-TGG-AACCTCTCTCTTGACCTTAATCACATC-TTTGAACTACTTGATG-CCTAGA 442
| || ||| | ||| |||||||||||| |||||||| |||| ||||||||| | ||| |
Sbjct 307 TTGCTTGGCATCCT-TCTCTTGACCTTGATCACATCTTTTG-ACTACTTGA-GACCTCCA 363
Query 443 CCGTGTGAAACGGGGTCAATTCTATGCCAGTCGCCATCAAAACTACAGCTTGGGATCTTG 502
|||||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 364 CCGTGTCAAACGGGGTCAATTCTATGCCAATCGCCATCAAAACTCCAGCTCGGGATCTTG 423
Query 503 TATGTAGCCTTAGCTCTAGTGATCATTGGATCAGCTGGGACGCGGTTCACCTTGGCAGCC 562
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 424 TATACAGCCTTAGCTCTAGTGATCATTGGATCAGCTGGGACGCGGTTCACCTTGGCATCC 483
Query 563 GCGGGTGCGAACCAATATAAGAAGCCTAAAGAACAAGGAAGATTCTTCAACTGGTTCTTC 622
|||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||| ||||
Sbjct 484 GCGGGTGCAAACCAATATGAGAAACCTAAAGAACAAGGAAGCTTCTTCAACTGGTACTTC 543
Query 623 CTTGCACTGTA-TATTGGAGCTATTACTGGCACGACAGCGATTGTATATACACAAGACAA 681
|| |||| || | | ||||||||||||||| | ||||| |||||||||||||| || ||
Sbjct 544 CTCACACTATACTCT-GGAGCTATTACTGGCGCAACAGCAATTGTATATACACAGGAAAA 602
Query 682 TGCTAGCTGGAAACTTGGGTTCGGTCTATGTGCCGTTGCTAA-CTTGATCAGTTTCATCG 740
|||||||||||||||||| || ||||| |||||| | ||||| || ||||||||||||||
Sbjct 603 TGCTAGCTGGAAACTTGGTTTTGGTCTTTGTGCCATCGCTAATCT-GATCAGTTTCATCG 661
Query 741 TTTTCATCGCCGGGGTTAGATTCTACAAGCATGACAAACCCTTGGGAAGTCC-TTATAC- 798
||||| || | ||| |||||||||||||||||||||||| ||||||| || || ||
Sbjct 662 TTTTCGTCTCTGGGAAGAGATTCTACAAGCATGACAAACCCATGGGAAGCCCCTTC-ACC 720
Query 799 AAGCCTGATCCGTGTTTTAGTT-GCTGCTACAATGAAAAGAAAGGCAGTGATTTCATCAA 857
|| | ||||||||||| || || ||||||||| ||||| ||||| || |||||||| |
Sbjct 721 AATC-TGATCCGTGTTGTA-TTCGCTGCTACAGCAAAAAGGAAGGCTGTAATTTCATCCA 778
Query 858 AAGACGAAGACTATCATCAATATGGTCTCGGGAA-AGAG-GCCAAGACTTATACTACAAT 915
||| ||||||||||| || | || || || || ||| || ||||| | | || ||||
Sbjct 779 GAGAAGAAGACTATCACCA-TG-GG-CTTGG-AAGAGAAAGC-AAGACGTCTGCTGCAAT 833
Query 916 GCCCTCCAAGAGCTTTAGGTTCTTGAACCGTGCAGCATTAAAGAACAAAGAAGATTTAAA 975
|||||||| |||||| |||||||| ||||||||||||||||| ||| |||||
Sbjct 834 GCCCTCCACGAGCTTCAGGTTCTTTAACCGTGCAGCATTAAA-AACC--GAAGA------ 884
Query 976 CACGAGTGGTGACTCAAGTAATAACATGTGGAGGCTATGCTCTGTTCAGGAAGTAGAAGA 1035
| || | || | ||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 885 C--GACTC-TG--T----TAATAACATCTGGAGGCTATGCTCGGTTCAAGAAGTAGAAGA 935
Query 1036 CTTCAAAGCCATTCTCCGACTTGTACCTCTCTGGGC-AGCCGTCATGTTCCTCAGCACTC 1094
|| ||||| || ||||| || | ||||| | | | |||| |||| ||| | || ||||
Sbjct 936 TTTTAAAGCTGTTTTCCGAGTTCTCCCTCTGTTG-CTAGCCATCATCTTCGTTAGTACTC 994
Query 1095 CCGTGGC-AGTACAAATGAGCATGACGGTTCTCCAAGCTTTGGTCATGGACCGCAAACTT 1153
|| ||| | | |||| ||| ||| | || |||||| | |||| ||||| |||
Sbjct 995 CCATGGTGA-TGCAAACAAGCTTGATTATACTTCAAGCTCTAGTCACAGACCGTGGGCTT 1053
Query 1154 AGCCCGCACTTCGAAGTCTCTGCCGGGTCTCTACAAGTCATAGTACTCGTCTTTGGTTGT 1213
|| | |||||| || || | |||||||| || ||||| |||||| || || | ||
Sbjct 1054 GGCTCTCACTTCAAAATCCCGGCCGGGTCCCTCCAAGTTATAGTAATCATCACCGCATGC 1113
Query 1214 GTCTTTATCATGCTCAACAACTGGATCATCTATCCCATGTACCAAAAGCTAATCGGCAAA 1273
|| |||| | | ||||| | | |||||||||||||||| ||| ||| | || |
Sbjct 1114 ATCGTTATTGTTATGAACAATTTCCTTGTCTATCCCATGTACCACAAGTTAACC--CATA 1171
Query 1274 C-C-ACTGACACCACTTCAACAAGTTGGGATCGGTCACGTTTTCACCATCCTAAGCATGG 1331
| | | | || || |||||| |||| || || || |||||||||| ||| |||||||||
Sbjct 1172 CGCCATTAACCCCGCTTCAAAAAGTCGGTATAGGCCACGTTTTCATCATTTTAAGCATGG 1231
Query 1332 CGATATCAGCTGTTGTGGAAGCAAAGAGACTGAAAACAGTTGAA-AATGG 1380
||||||| || ||||| ||||||||||| |||||||||||| || |||||
Sbjct 1232 CGATATCCGCCGTTGTCGAAGCAAAGAGGCTGAAAACAGTT-AATAATGG 1280
Score = 300 bits (162), Expect = 3e-80
Identities = 226/257 (88%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 1504 CACCGCAACTTCATTGACCTCAGTGGTGATTGGAATCTCTTTCTATCTGAGCACAGCTGT 1563
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 1290 CACCGCAACTTCATTGACCTCAGTGGTGATTGGAATCTCCTTCTACCTGAGCACAGCTCT 1349
Query 1564 TATCG-ACGTGATCCA-AAGAACCACCTCGTGGTTACCAAATGACATAAACCATGGAAGA 1621
||| || ||||||| |||| ||||| ||||||||||||||| || |||| |||||||
Sbjct 1350 GATCACAC-TGATCCAGAAGA-CCACCAAGTGGTTACCAAATGATATTAACCGTGGAAGA 1407
Query 1622 GTTGACAATGTTTACTGGGTTGTAGTCATAGGAGGAGTCTTGAATCTCGGCTATTTCCTT 1681
|||||||| ||||||||| || ||||||| | ||||||||||||| ||||||||||||||
Sbjct 1408 GTTGACAACGTTTACTGGCTTTTAGTCATTGTAGGAGTCTTGAATTTCGGCTATTTCCTT 1467
Query 1682 GTCTGCTCTTGGTTTTACAAATACAGAAACCTCAAGGATGATGATCATGAACAAGATCCT 1741
|| ||| |||||||||||| ||| ||| |||| || ||||||||||| |||||||||||
Sbjct 1468 GTATGCGCTTGGTTTTACAGATATAGAGACCTGAAAGATGATGATCAGGAACAAGATCCA 1527
Query 1742 AAAGATGTTAAAACCTA 1758
|||||||||| || |||
Sbjct 1528 AAAGATGTTACAATCTA 1544
> Ahg323231 jgi|Araly1|323231|fgenesh1_pm.C_scaffold_5000775
Length=1677
Score = 409 bits (221), Expect = 5e-113
Identities = 1226/1684 (73%), Gaps = 177/1684 (11%)
Strand=Plus/Plus
Query 138 AGC-GTGGTGGCTGGATCACTTTACCGTTCATGCTAGTTACATTATTAGGCATGTCCATA 196
||| |||| || ||||||||||| ||||| ||| ||||||| || |||||| || | |||
Sbjct 64 AGCGGTGGAGGTTGGATCACTTTTCCGTTTATGATAGTTACGTTGTTAGGCTTGACAATA 123
Query 197 ACTTCTTTCGGATGGGGAATGAACTTGATCGTCTTCTTGATCGAGGAATTCCACATCAAG 256
|| | | || ||| | | ||||||||||||| |||||| ||||||||| || | |||
Sbjct 124 GCTGCGTGGGGTTGGTTACTTAACTTGATCGTCTACTTGATTGAGGAATTCAACGTGAAG 183
Query 257 AACATCGCTGCTGCTCAGATTTCAAATGTTGTCAATGGAGTTG--TCAACAT-GTTACCT 313
| |||||| || ||||||||| | || |||| | | | |||| || || ||| ||
Sbjct 184 AGCATCGCAGCGGCTCAGATTGCTAACATTGTTAGT-G-GTTGTATCTGTATGGTT-CCA 240
Query 314 GTTGTTGCAGCCA-TCCTAGCTGATTCCTTT-TTTGGGAA-CATTCCCGTCATCTCCACC 370
| | | ||||||| | | | |||| | |||| ||| |||| |||||| || |||| ||
Sbjct 241 GCTATGGCAGCCATTGC-ATCTGACT-CTTTCTTT-GGAACCATTCCTGTTATCT-CAGT 296
Query 371 TCCA-CTTTCATTTCTCTGGCTGGAACCT--CTCT-CTTGACCT-TAATCACATC-TTTG 424
| || ||||||||||||| ||| | | |||| | ||| || ||| | | || |||
Sbjct 297 TTCAGCTTTCATTTCTCT-TATGG-GCGTAGCTCTGC-TGA-CTCTAACCGCTTCGCTTG 352
Query 425 AACTACTTGATG-CCTAGA-CCGTGTGAAACGGGGTCAATTCTATGCCAGTCGCCATC-A 481
||| ||| | | |||||| || |||||||| | |||| ||||||||||| || || |
Sbjct 353 -ACT-CTTTAAGACCTAGAGCC-TGTGAAACAGCTTCAAGCCTATGCCAGTCTCCTTCGA 409
Query 482 AAACTACAGCTTGG-GATCTTGTATGTAGCCTTAGCTCTAGTGATC-ATTGGATCAGCTG 539
|||| ||||| || | |||| || ||| || |||||| || || ||| ||| ||
Sbjct 410 AAAC-CCAGCTCGGAGTTCTT-TACACGGCCATAACTCTAG-CCTCTATAGGAACAGGTG 466
Query 540 GGACGCGGTTCACCTTGGCAGCCGCGGGTGCGAACCAATAT-AAGAAGCCTAAAGAACAA 598
|||| |||||||| || ||| | || ||||||||||| ||| || || ||||||| |||
Sbjct 467 GGACACGGTTCACATTAGCAACTGCTGGTGCGAACCAGTATGAA-AAAACTAAAGACCAA 525
Query 599 GGAAGATTCTTCAACTGGTTCTTCCTTGCACT--GTATATT---GGAGCTATTACTGGCA 653
||||| || ||||||||||| || ||| |||| |||| || |||||||| | | |||
Sbjct 526 GGAAGCTTTTTCAACTGGTT-TTTCTT-CACTACGTATCTTGCCGGAGCTATAAGT-GCA 582
Query 654 CGACAGCGATTGTATATACACAAGAC-A-ATGCTAGCTGGAAACTT-GGGTTCGGTCTAT 710
|| || ||||| || || ||||| | || | |||||| | ||| ||||| |||| |
Sbjct 583 --ACCGCCATTGTCTACACTGAAGACAACAT-C-AGCTGG-ACCTTGGGGTTTGGTC--T 635
Query 711 GTGCCGT---TGCTAACTTGATCAGTTTCATCGTTTTCATCGCCGGGG-TTAGATTCTAC 766
|| |||| ||||||| | ||||||| | ||||||||| ||||| |||||||||
Sbjct 636 GT-CCGTAGCTGCTAACCTCTTCAGTTTTTTGGTTTTCATC-TCGGGGAAAAGATTCTAC 693
Query 767 AAGCATGACAAACCCTTGGGAAGT-CCTTATACAAG-C--CTGATCCGT-GTTTTAGTTG 821
||||| ||||| || ||||||||| |||| ||||| | || || ||| |||| | |
Sbjct 694 AAGCACGACAAGCCTTTGGGAAGTCCCTT-CACAAGTCTACT-ATGCGTCATTTTCGCCG 751
Query 822 CTGCTACAATG-AAAAGAAAGGCAGTGATTTCATCAAAAGACGAAGACTATCATCAATAT 880
| | ||| | |||||||| || ||| |||| || | ||||| | | | | ||
Sbjct 752 C-GGTAC---GCAAAAGAAAAGCTGTGGTTTC--CACCA-ACGAA-A--A--A-GACTA- 797
Query 881 GGTCTCGGGAAAGAGGCCAAGACTTATACTACAATGCCCTCCAAGAGCTTT-AGGTTCTT 939
| | | | | | || | ||| | ||||||||| | ||||| ||| ||||||||
Sbjct 798 ---C-C---ACA-ATG--AA-TC-TAT-C-ACAATGCCCACAAAGAG-TTTCAGGTTCTT 842
Query 940 GAACCGTGCAGCATT-AAAGAACAAAGAAGA-TTTAAACACGAGTGGTGACTCAAGTAAT 997
||||||||||| || ||| || |||| || |||||| | || | | | ||| | |
Sbjct 843 TAACCGTGCAGCGTTGAAACAA-GAAGACGAGGTTAAAC-C-AGACG-G-CACAATTCGT 897
Query 998 AA-CATGTGGAGGCTATGC-TCTGTTCAGGAAGTAGAAGACTTCAAAGCCATTC-TCCGA 1054
|| | ||||| |||||| | ||||| |||||||||| ||||||| || || | ||
Sbjct 898 AATC-CCTGGAGACTATGCAGC-GTTCAACAAGTAGAAGATTTCAAAG-CAGTCATAAGA 954
Query 1055 CTTGTACCTCTCTG-GGCAGCCGT-C-ATGTTCCTCAGCACTCCCGTGGCAGTACAAATG 1111
|| | ||||| || | || | | | || ||| | |||||||| | ||| | || |
Sbjct 955 ATTATCCCTCT-TGCGTTAG-C-TACAATATTCTTAAGCACTCCAATCGCAATGCAGCTA 1011
Query 1112 AGCATGACGGTTCTCCAAGCTTTGGTCATGGACCGCAAACTTAGCCCGCA-CTTCGAAGT 1170
||| | || ||||| |||| | |||| |||||||| | ||| |||| | |||| || |
Sbjct 1012 AGCTTAACAGTTCTTCAAGGTCTGGTGATGGACCGGAGGCTTGGCCC-TAGCTTCAAAAT 1070
Query 1171 CTCTGCCGGGTCTCTACAAGTCATAGTAC-TCGTCTTTGGTTGTGTCTTTATCAT-GCTC 1228
| |||| || ||||| ||||||||| || || ||| ||| | |||||||| | ||
Sbjct 1071 CCCTGCAGGCTCTCTCCAAGTCATAACACTTC-TCTCCACTTGCCTATTTATCATAG-TC 1128
Query 1229 AA-CAACTGG-ATCATCTATCCCA-TGTACCAAAAGCTAATCGGCAAA--CCACTGACAC 1283
|| | | || || ||||| ||| | ||||||||| ||| ||| ||| | || ||||
Sbjct 1129 AATGATC-GGTTTC-TCTAT-CCATTTTACCAAAAGTTAA-CGGGAAAGTTC-CTTACAC 1183
Query 1284 CACTTCAACAAGTTGGGATCGGTCACGTTTTCACCATCCTAAGCATGG-CGAT-ATCAGC 1341
| || |||| ||| || || || || | ||||| ||| |||||||||| || | | | ||
Sbjct 1184 CGCTCCAACGAGTCGGTATAGGCCATGCTTTCAACATTCTAAGCATGGCCG-TGA-CTGC 1241
Query 1342 TGTTGTGGAAGCAAAGAGACTGAAAACAGTTGAAAATGG--A-------GG--C--CAT- 1387
| || ||||||||| || |||| | ||| | || || | || | |||
Sbjct 1242 CATAGTTGAAGCAAAGCGATTGAAGATAGTACAGAAGGGTCATTTTCTCGGATCATCATC 1301
Query 1388 C----C---CATGTCAGTGC-TATGGCTAGTT-CCTGCTCTTGTGATGGTTGGAATAGGC 1438
| | ||||||||| | | ||||| || || |||| || || || ||||| ||
Sbjct 1302 CGTTGCTGACATGTCAGT-CTTGTGGCT-CTTCCCACCTCTAGTCATAGTAGGAATTGGA 1359
Query 1439 GAGGCGTTTCATTTTCCC-GCGAATGTTGCAGTATTCTATGGAGAATTCCCTGAGTCTCT 1497
||||| || || |||||| | |||||| || | | |||| ||| || || |||||| |
Sbjct 1360 GAGGCCTTCCA-TTTCCCAGGGAATGTAGCTCTGTGCTATCAAGAGTTTCCAGAGTCTAT 1418
Query 1498 GAAGAA-CACCGCAACTTC-ATTGACCTCAGTGGTGATTGGAATCTCTTTCTATC-TGAG 1554
| |||| ||||||||| || ||| ||||| ||||||||||| || | |||||| | ||
Sbjct 1419 G-AGAAGCACCGCAACATCGATT-ACCTCGGTGGTGATTGGGATATGTTTCTA-CACAAG 1475
Query 1555 CACAGCTGTT-ATCGA-CGTGATCCAAAGAACCACCTCGTGGTTACCAAATGACATAAAC 1612
||| ||| || || || | |||| || || |||||| ||||||||||| ||||||| |||
Sbjct 1476 CACTGCT-TTGATTGATC-TGATTCAGAGGACCACCGCGTGGTTACCAGATGACATTAAC 1533
Query 1613 CATGGAAGAGTTGACAATGTTTACTGGGTTGTAGTCATAGGAGGAGTCTTGAATCTCGGC 1672
|| ||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||
Sbjct 1534 CACGGAAGAGTTGACAATGTTTACTGGGTTTTAGTAATTGGAGGAGTCTTGAATCTTGGC 1593
Query 1673 TATTTCCTTGTCTGCTC-TTGGTTTTACAAATACAGAAACCTCAAGGATGATGATCATGA 1731
||||| ||||| || || |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1594 TATTTTCTTGTGTGTTCTTTGG-TTTACAGATACAGAAACCTCAAGGATGATGATCATGA 1652
Query 1732 ACAA 1735
|||
Sbjct 1653 GCAA 1656
> Ahg347652 jgi|Araly1|347652|fgenesh1_pg.C_scaffold_5001044
Length=1680
Score = 302 bits (163), Expect = 8e-81
Identities = 296/358 (83%), Gaps = 18/358 (5%)
Strand=Plus/Plus
Query 1390 CATGTCAGTGC-TATGGCTAGTT-CCTGCTCTTGTGATGGTTGGAATAGGCGAGGCGTTT 1447
||||||||| | | ||| || || ||| |||| || || || ||||| || ||||| ||
Sbjct 1311 CATGTCAGT-CTTGTGGTTA-TTCCCTCCTCTAGTCATAGTAGGAATCGGAGAGGCCTTC 1368
Query 1448 CATTTTCCC-GCGAATGTTGCAGTATTCTATGGAGAATTCCCTGAGTCTCTGAAGAA-CA 1505
|| |||||| | |||||| || ||| |||| |||||| || |||||| || |||| |
Sbjct 1369 CA-TTTCCCAGGGAATGTAGCTCTATGCTATCAAGAATTTCCAGAGTCTATG-AGAAGCC 1426
Query 1506 CCGCAACTTC-ATTGACCTCAGTGGTGATTGGAATCT-CTTTCTATC-TGAGCACAGCTG 1562
||||||| || | | ||||| ||||||||||| || | | ||||| | ||||| |||
Sbjct 1427 CCGCAACATCGA-TCACCTCGGTGGTGATTGGGATATGC-TTCTA-CACAAGCACTGCT- 1482
Query 1563 TT-ATCGA-CGTGATCCAAAGAACCACCTCGTGGTTACCAAATGACATAAACCATGGAAG 1620
|| ||||| | |||| || || || ||| ||||||||||| |||||||||||||||||||
Sbjct 1483 TTGATCGATC-TGATTCAGAGGACAACCGCGTGGTTACCAGATGACATAAACCATGGAAG 1541
Query 1621 AGTTGACAATGTTTACTGGGTTGTAGTCATAGGAGGAGTCTTGAATCTCGGCTATTTCCT 1680
|||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| ||
Sbjct 1542 AGTTGACAATGTTTACTGGGTTTTAGTTATAGGAGGAGTCTTGAATCTTGGCTATTTTCT 1601
Query 1681 TGTCTGCTCTTGGTTTTACAAATACAGAAACCTCAAGGATGATGATCATGAACAAGAT 1738
||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1602 TGTGTGTTCTTGGTTTTACAAATACAGAAACCTCAAGAATGATGATCATGAGCAAGAT 1659
> Ahg937247 jgi|Araly1|937247|scaffold_501438.1
Length=441
Score = 124 bits (67), Expect = 2e-27
Identities = 102/118 (86%), Gaps = 5/118 (4%)
Strand=Plus/Plus
Query 59 TTCATCTTGTTCTCTACCATGGCTGATTCAAAATCTGGTGACACGGAAGTAGCGCATCGC 118
||| |||| |||||| |||||||||||||||| | | |||||| ||| ||||||| |
Sbjct 4 TTCCTCTTATTCTCTGCCATGGCTGATTCAAACTTTAGTGACA---AAGAAGCGCATTAC 60
Query 119 TCTAGCGATCCAAGCGA-AAAGCGTGGTGGCTGGATCACTTTACCGTTCATGCTAGTT 175
|||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TCTAGCGATCCAAG-TAGAAAGCGTGGTGGCTGGATCACTTTACCGTTCATGCTTGTT 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70505043495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5