BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45720.1
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484951 jgi|Araly1|484951|fgenesh2_kg.5__943__AT3G45680.1 1315 0.0
Ahg937250 jgi|Araly1|937250|scaffold_501441.1 1134 0.0
Ahg897373 jgi|Araly1|897373|Al_scaffold_0005_1339 1112 0.0
Ahg484953 jgi|Araly1|484953|fgenesh2_kg.5__945__AT3G45690.1 848 0.0
> Ahg484951 jgi|Araly1|484951|fgenesh2_kg.5__943__AT3G45680.1
Length=1839
Score = 1315 bits (712), Expect = 0.0
Identities = 1347/1647 (82%), Gaps = 69/1647 (4%)
Strand=Plus/Plus
Query 53 GCAAACGCGGTGGCTGCATCACTTTTCCGTTCATGATAGCTACATTGTTAGGTATTTCAG 112
|||| ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 99 GCAAGCGCGGTGGCTGGATCACTTTTCCGTTCATGATCGCTACGTTGTTAGGCCTTTCAG 158
Query 113 TGACTTCTTAT-GGATGGGTACTGAACTTGATTGTCTTCTTGATCGAGGAATAT-AACAT 170
||||||||| | ||||||||| |||||||||| |||||| | ||||| || | | |||||
Sbjct 159 TGACTTCTT-TCGGATGGGTAATGAACTTGATCGTCTTCCTAATCGAAGAGT-TCAACAT 216
Query 171 CAAGAGCATAGCTGCTGCTCAGATTTCAAACATTGTCAATGGATGTCTCAGCATGTTGCC 230
||||||||| |||||||| || |||||||| |||| ||||||||||||||||||||||||
Sbjct 217 CAAGAGCATCGCTGCTGCGCAAATTTCAAATATTGCCAATGGATGTCTCAGCATGTTGCC 276
Query 231 TGTTGTTACAGCCATTCTCGCTGATTCTTTCTTTGGAAACATTCCTGTAATC-TCGGCTT 289
||||||| |||||||| | ||||| |||||||| || |||||||| || ||| | ||| |
Sbjct 277 TGTTGTTGCAGCCATTTTAGCTGACTCTTTCTTCGGGAACATTCCCGTCATCGT-GGCCT 335
Query 290 CTGCTTTCATTTCTCTGCTTGGCATCTTTCTCTTGACTCTGATCT-CATCTTTCGAAAAC 348
|||||||||||||||||||||||||| ||||||||||||| || | ||||||| || ||
Sbjct 336 CTGCTTTCATTTCTCTGCTTGGCATCATTCTCTTGACTCTTAT-TGCATCTTTGGACTAC 394
Query 349 TTGAGACCTAGACCGTGTGAAACAGGCTCAATCCTATGCCA-ATCGCCATCAAAACTCCA 407
|||||||| ||||||||| ||| || ||||||||||| || ||| ||||||||||||||
Sbjct 395 TTGAGACCCCGACCGTGTGGAACGGGGTCAATCCTATG-CACATCTCCATCAAAACTCCA 453
Query 408 CCTCGGGGTCTTGTATGCAGCGTTAGCTCTAGTGACTGCTGGAACTTCTGGGACACGGGT 467
|||||| ||||||||||||| ||||||||||| || ||||| | |||||| ||| |
Sbjct 454 GCTCGGGATCTTGTATGCAGCATTAGCTCTAGTCACCACTGGATCAGGTGGGACGCGGTT 513
Query 468 GGCTTTGGCATCTGCTGGTGCAAACCAGTATGATAAACCTAGAG-ACAAAGGAAGCTTCT 526
| ||||||| || ||||||||||| ||||| || |||| || || ||||||||||||
Sbjct 514 CACCATGGCATCCGCGGGTGCAAACCAATATGAGAAGCCTAAAGAAC-AAGGAAGCTTCT 572
Query 527 TCAACTGGTACTTCCTCACGGTAAATACA--GGCGCGATTATTAGCGCGACAGCAATTGT 584
||||||||||||||||||| | ||||| || || |||| | |||| ||| |||||||
Sbjct 573 TCAACTGGTACTTCCTCACACT--ATACATTGGAGCTATTACTGGCGCAACATCAATTGT 630
Query 585 ATATACACAGGAGAATGCTAGCTGGAGACTCGGGTTTGGTCTTTGTGCAGCTGCTAATTT 644
||||| |||||| ||||||||||||| ||| ||||| ||||| || || |||||||||||
Sbjct 631 ATATATACAGGACAATGCTAGCTGGAAACTTGGGTTCGGTCTCTGCGCTGCTGCTAATTT 690
Query 645 GATCAGTTTCATAGTTTTCATTTCCGGGAAGAGATTCTACAAGCATGACAAACCAATGGG 704
|||||||||||||||||| | || |||||||||| ||||||||||||||||||||||||
Sbjct 691 GATCAGTTTCATAGTTTTTGTCTCTGGGAAGAGATACTACAAGCATGACAAACCAATGGG 750
Query 705 AAGTCCCTTCACAAGCCTTATCCGCGTCT-TAGTCGCTGCTATA-CTGAAAATCAAGG-T 761
|||||||||||| || || |||||||| | |||||||||||| | | |||| |||| |
Sbjct 751 AAGTCCCTTCACGAGTCTGATCCGCGT-TGTAGTCGCTGCTACAGC-AAAAAGGAAGGCT 808
Query 762 AGTGACCTCTTCCAAAGAAGAAGATTATCACCG-GGAAG-TTGAAAAAGAATCCAAG-AC 818
| || ||| | |||||||||||| |||||||| || | | | |||||| || || ||
Sbjct 809 A-TGGTCTCATGCAAAGAAGAAGACTATCACCGTGG--GCTGGGAAAAGAGGCC-AGAAC 864
Query 819 TTGTATTGGAATGCCTTCCAAGAGCTTCAGGTTTTTGAACCGTGCAGCATTAAAGAGCGA 878
|| | ||| |||||| ||||||||||||||||| |||||||||||||| || |||| |||
Sbjct 865 TTCTGTTGCAATGCCCTCCAAGAGCTTCAGGTTCTTGAACCGTGCAGCGTTGAAGACCGA 924
Query 879 AAAGGACT-TAAATCAAGAAGATGGCTTATG-TCA-TAACCCT-TGGAGGTTATGTTCTG 934
| | || | ||||| || |||| |||| | | | | ||| | | |||||| |||| ||||
Sbjct 925 AGACGA-TGTAAATAAAAAAGACGGCTCA-GAT-ATTAA-CATATGGAGGCTATGCTCTG 980
Query 935 TTGAGGAAGTAGAAGATTTTAAATCTGTTCTCAGAGTTCTT-CCTCTATGGTTAGCAATC 993
| |||||||||||||||| ||| | ||||| ||||| || |||||||||||| | |||
Sbjct 981 TACAGGAAGTAGAAGATTTCAAAGCCATTCTCCGAGTT-TTGCCTCTATGGTTATCCATC 1039
Query 994 TTATTCGTTGGAACTTCCAT-TGGTG-TCCAAGCAAGCATGACGGTTCTCCAAGCTCTGG 1051
| |||||| | || ||| | ||||| | ||| |||| ||| || ||||||||||| |
Sbjct 1040 ATCTTCGTTAGTAC-TCC-TATGGTGATGCAAACAAGTTTGATTGTACTCCAAGCTCTAG 1097
Query 1052 TAACAGACCGAGGAC-TCGACTCTAAATTTAAAGTCCCGGCCGGGTCTCTACAAGTAATA 1110
| || ||||| || | | | | |||| || |||||||||||||| || || |||||||||
Sbjct 1098 TCACCGACCGTGGGCTTGGTC-CTAACTTCAAAGTCCCGGCCGGTTCCCTCCAAGTAATA 1156
Query 1111 GTACTCATCTCTTCATGCGTCT-TTCTCGTGC-TCAATAACTGGAC-TAT-TTATCCCAT 1166
|| ||||| || ||||| | | || || | | | || |||||| | | | || ||| ||
Sbjct 1157 ATAATCATCACTGCATGCAT-TGTTATCAT-CATGAACAACTGG-CTTGTCTT-TCCAAT 1212
Query 1167 CTATC-AGAAGATAACTCATAAACAGCTGACACCACTGCAACAAGTCGGTATAGGCCAAG 1225
|| | ||||| ||||||| || ||||||||| |||||| |||||||||||||||| |
Sbjct 1213 GTA-CAAGAAGCTAACTCAGAAGTTGCTGACACCGCTGCAAAAAGTCGGTATAGGCCAGG 1271
Query 1226 TTTTCAACATCCTTAGCATGGCAATCTCCGCCATCGTGGAAGCAAAAAGGCTGAAAACAG 1285
|| ||| ||| |||||||||||| |||| || | ||||||||||| || ||||||||||
Sbjct 1272 TTCTCACCATTCTTAGCATGGCACTCTCTGCGGTTGTGGAAGCAAAGAGACTGAAAACAG 1331
Query 1286 TTGAAAATGAGCATCCTATGTCAGTGTTATGGCTGTTACCACCTCTTGTGATAGTTGGAA 1345
|||||||||||||||||||||||||||||||| |||| || || ||||||||||| || |
Sbjct 1332 TTGAAAATGAGCATCCTATGTCAGTGTTATGGTTGTTTCCTCCCCTTGTGATAGTAGGTA 1391
Query 1346 TTGGCGATGCCTTTCA-TTATATGGCGAATGTTGCAGTGTTCTATGGAGAGTTCCCTGAG 1404
| || || |||||||| || | ||||||| ||| | | || |||||||| ||||| |||
Sbjct 1392 TAGGTGAAGCCTTTCAATT-TCCGGCGAATATTGAATTATTTTATGGAGAATTCCCCGAG 1450
Query 1405 TCTATGAGGAACACAGCAACCTC-TGTGACCTCGGTGGCGTTTGGAATCTCCTTCTATTT 1463
||| |||||||||| || || || | |||||||||||| | |||||||||| |||||| |
Sbjct 1451 TCTCTGAGGAACACTGCGACTTCAT-TGACCTCGGTGGTGATTGGAATCTCTTTCTATCT 1509
Query 1464 AAGTACAGCTCTAATAAA-CTTGATACAGAGGACCACCGCGTGGTTACCAGACGACATTA 1522
||| |||||||| || | ||| || || |||||||| |||||||||||| | ||||| |
Sbjct 1510 AAGCACAGCTCTTATCGATCTT-ATCCACAGGACCACTGCGTGGTTACCAAATGACATAA 1568
Query 1523 ACCACGGGAGAGTGGACAATGTGTACTGGGTTTTGGTCATTGGAGGTGTCTTGAACCTT- 1581
||||||| |||||||||||||| |||||| |||| ||||||||||| ||||||| ||
Sbjct 1569 ACCACGGAAGAGTGGACAATGTTTACTGGATTTTAGTCATTGGAGGAATCTTGAAT-TTC 1627
Query 1582 GGCTATTTCTTTGTCTGCTCTTGG-TATTTCACGTACAGAAAAATCCAAGA-TGATAA-C 1638
||||| ||| |||| || |||||| | | || |||||||| || ||| |||| | |
Sbjct 1628 GGCTACTTCCTTGTGTGTTCTTGGGTCTA-CAAATACAGAAACCTC-AAGTGTGATGATC 1685
Query 1639 A-GA-CAAGATCCTAAAGATGTTACAA 1663
| || |||||||| |||||||||||||
Sbjct 1686 ATGAACAAGATCCAAAAGATGTTACAA 1712
> Ahg937250 jgi|Araly1|937250|scaffold_501441.1
Length=1134
Score = 1134 bits (614), Expect = 0.0
Identities = 789/872 (90%), Gaps = 18/872 (2%)
Strand=Plus/Plus
Query 376 TCAATCCTATGCCAATCGCCATCAAAACTCCACCTCGGGGTCTTGTATGCAGCGTTAGCT 435
||||||||||||||||| |||||||||||||||||| || ||||||||||||| ||||||
Sbjct 34 TCAATCCTATGCCAATCCCCATCAAAACTCCACCTCCGGATCTTGTATGCAGCCTTAGCT 93
Query 436 CTAGTGACTGCTGGAACTTCTGGGACACGGGTGGCTTTGGCATCTGCTGGTGCAAACCAG 495
|||||||| ||||||||| |||||| | ||||||||||||||||||| |||||||||||
Sbjct 94 CTAGTGACCGCTGGAACTGCTGGGATAAGGGTGGCTTTGGCATCTGCGGGTGCAAACCAA 153
Query 496 TATGATAAACCTAGAGACAAAGGAAGCTTCTTCAACTGGTACTTCCTCACGGTAAATACA 555
||||||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 154 TATGATAAACCTAGACACAAAGGAACCTTCTTCAACTGGTACTTCTTTACGGTAAATACA 213
Query 556 GGCGCGATTATTAGCGCGACAGCAATTGTATATACACAGGAGAATGCTAGCTGG-AGACT 614
||||| ||||||||||||||| ||||||| ||||| |||||||| ||||||||| || ||
Sbjct 214 GGCGCAATTATTAGCGCGACATCAATTGTGTATACGCAGGAGAACGCTAGCTGGAAG-CT 272
Query 615 CGGGTTTGGTCTTTGTGCAGCTGCTAATTTGATCAGTTTCATAGTTTTCATTTCCGGGAA 674
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 273 CGGGTTCGGTCTTTGTGCAGCTGCTAATTTGATCAGTTTCATAGTTTTTATCTCCGGGAA 332
Query 675 GAGATTCTACAAGCATGACAAACCAATGGGAAGTCCCTTCACAAGCCTTATCCGCGTCTT 734
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 333 GAGATTCTACAAGCATGACAAACCAATGGGAAGTCCCTTCACAAGCCTGATCCGCGTTTT 392
Query 735 AGTCGCTGCTATACTGAAAATCAAGG-TAGTGACCTCTTCCAAAGAAGAAGATTATCACC 793
||||||||||||||||||||| || | | || | ||||| |||||||||||||||||||
Sbjct 393 AGTCGCTGCTATACTGAAAATAAAAGCT-GTTATATCTTCTAAAGAAGAAGATTATCACC 451
Query 794 GGGAAGTT-GAAAAAGAATC-CAAGACTTGTATTGGAATGCCTTCCAAGAGCTTCAGGTT 851
|||| | | |||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 452 GGGA-GCTAGAAAAAGA-TGGCAAGACTTCCGTTGGAATGCCTTCCAAGAGCTTCAGGTT 509
Query 852 TTTGAACCGTGCAGCATTAAAGAGC-GAAAAGGACTTAAATCAAGAA-GATGGCTTATGT 909
||||||||||||||||| |||| | || ||||||||||| | ||| || |||| | ||
Sbjct 510 CTTGAACCGTGCAGCATTGAAGA-CTGATGAGGACTTAAATGA-GAAAGACGGCTCA-GT 566
Query 910 CA-TAACC-CTTGGAGGTTATGTTCTGTTGAGGAAGTAGAAGATTTTAAATCTGTTCTCA 967
| |||| || ||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 567 TAATAACATCT-GGAGGCTATGTTCTGTTGAGGAAGTAGAAGATTTGAAATCTGTTCTCA 625
Query 968 GAGTTCTTCCTCTATGGTTAGCAAT-CTTATTCGTTGGAACTTCCATTGGTGTCCAAGCA 1026
||||||| ||||||||||||||||| || ||||||||||| |||||||||| | ||||||
Sbjct 626 GAGTTCTCCCTCTATGGTTAGCAATTCT-ATTCGTTGGAAATTCCATTGGTTTTCAAGCA 684
Query 1027 AGCATGACGGTTCTCCAAGCTCTGGTAACAGACCGAGGACTCGACTCTAAATTTAAAGTC 1086
|||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 685 AGCATGACGGTTCTACAAGCTCTGGTAACAGACCGAGGACTCGGCTCTAGATTCAAAGTT 744
Query 1087 CCGGCCGGGTCTCTACAAGTAATAGTACTCATCTCTTCATGCGTCTTTCTCGTGCTCAAT 1146
||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 745 CCGGCCGGGTCACTGCAAGTAATAGTACTCATCTCATCATGCGTCTTTCTTGTGCTCAAT 804
Query 1147 AACTGGACTATTTATCCCATCTATCAGAAGATAACTCATAAACAGCTGACACCACTGCAA 1206
||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || |||
Sbjct 805 AACTGGACTATGTATCCCATGTATCAGAAGATAACCCATAAACAGCTAACACCGCTTCAA 864
Query 1207 CAAGTCGGTATAGGCCAAGTTTTCAACATCCT 1238
||||||||||||||||||||||||||||||||
Sbjct 865 CAAGTCGGTATAGGCCAAGTTTTCAACATCCT 896
Score = 320 bits (173), Expect = 2e-86
Identities = 211/229 (92%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 1315 TGGCTGTTACCACCTCTTGTGATAGTTGGAATTGGCGATGCCTTTCATTATATGGCGAAT 1374
||||| || || ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 904 TGGCTCTTTCCTCCTCTCGTGATAGTTGGAATTGGCGATGCCTTCCATTATATGGCGAAT 963
Query 1375 GTTGCAGTGTTCTATGGAGAGTTCCCTGAGTCT-ATGAGGAACACAGCAACCTCTGTGAC 1433
|| |||||||||||||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 964 GTAGCAGTGTTCTATGGAGAGTTCCCTGAGTCTCAA-AGGAACACAGCAACCTGTGTGAC 1022
Query 1434 CTCGGTGGCGTTTGGAATCTCCTTCTATTTAAGTACAGCTCTAATAAACTTGATACAGAG 1493
|||||||||| |||||||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 1023 CTCGGTGGCGATTGGAATCTCCTTCTATTTAAGTATAGCTCTAATCAACCTGATACAGAG 1082
Query 1494 G-ACCACCGCGTGGTTACCAGACGACATTAACCACGGGAGAGTGGACAA 1541
| |||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1083 GGACCACCACGTTGTTACCAGACGACATTAACCATGGGAGAGTGGACAA 1131
Score = 56.5 bits (30), Expect = 6e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 100 TTAGGTATTTCAGTGACTTCTTATGGATGG 129
||||||||||||||||||||||||||||||
Sbjct 3 TTAGGTATTTCAGTGACTTCTTATGGATGG 32
> Ahg897373 jgi|Araly1|897373|Al_scaffold_0005_1339
Length=1530
Score = 1112 bits (602), Expect = 0.0
Identities = 1192/1474 (81%), Gaps = 52/1474 (4%)
Strand=Plus/Plus
Query 55 AAA-CGCGGTGGCTGCATCACTTTTCCGTTCATGATAGCTACATTGTTAGGTAT-TTCAG 112
||| || |||||||| |||||||| ||||||||| | | |||||||||||| || | ||
Sbjct 57 AAAGCGTGGTGGCTGGATCACTTTACCGTTCATGCTCGTTACATTGTTAGGCATGTCCA- 115
Query 113 TGACTTCTTAT-GGATGGGTACTGAACTTGATTGTCTTCTTGATCGAGGAATAT-AACAT 170
| ||||||| | ||||||| | |||||||||| ||||||||||||||||||| | || ||
Sbjct 116 TAACTTCTT-TCGGATGGGGAATGAACTTGATCGTCTTCTTGATCGAGGAAT-TCAATAT 173
Query 171 CAAGAGCATAGCTGCTGCTCAGATTTCAAACATTGTCAATGGATG-TCTCAGCATGTTGC 229
||||| ||| |||||||||||||||||||| |||||||||||| | | ||| ||||||||
Sbjct 174 CAAGAACATCGCTGCTGCTCAGATTTCAAATATTGTCAATGGA-GTTGTCAACATGTTGC 232
Query 230 CTGTTGTTACAGCCATTCTCGCTGATT-CTTTCTTTGGAAACATTCCTGTAATCTCGGCT 288
|||||||| ||||||| || || |||| |||| || || |||||||| || |||||||||
Sbjct 233 CTGTTGTTGCAGCCATCCTAGCCGATTCCTTT-TTCGGGAACATTCCCGTCATCTCGGCT 291
Query 289 TCTGCTTTCATTTCTCTG-CTTGGCA-TCTTTCTCTTGA-CTCTGATCTCATCTTTCGAA 345
|| |||||||||||| || | ||| | ||| |||||||| || | ||| ||||||| ||
Sbjct 292 TCCGCTTTCATTTCTTTGAC-TGG-AGTCTCTCTCTTGACCT-TAATCACATCTTTGGAC 348
Query 346 AACTTGAGACCTAGACCGTGTGAAACAGGCTCAATCCTATGCCAATCGCCATCAAAACTC 405
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TACTTGATACCTAGACCGTGTGAAACAGGCTCAATCCTATGCCAATCGCCATCAAAACTA 408
Query 406 CACCTCGGGGTCTTGTATGCAGCGTTAGCTCTAGTGACTGCTGGAACTTCTGGGACACGG 465
|| ||||| ||||||||||||| ||||||||||| | || |||| | ||||||| |||
Sbjct 409 CAACTCGGAATCTTGTATGCAGCCTTAGCTCTAGTAATTGTTGGATCAGCTGGGACGCGG 468
Query 466 GTGGCTTTGGCATCTGCTGGTGCAAACCAGTATGATAAACCTAGAGA-CAAAGGAAGCTT 524
| | |||||| | || ||||| ||||| ||| | ||||| | ||| ||| ||| ||||
Sbjct 469 TTCACCTTGGCAGCCGCAGGTGCGAACCAATATAAGAAACCGAAAGAACAA-GGACGCTT 527
Query 525 CTTCAACTGGTACTTCCTCACGGTAAATACAGGCGCGATTATTAGCGCGACAGCAATTGT 584
||||||||||| ||||||| | || |||| || ||||||| | || |||||||||||||
Sbjct 528 CTTCAACTGGTTCTTCCTCTCATTATATACCGGAGCGATTACTGGCACGACAGCAATTGT 587
Query 585 ATATACACAGGAGAATGCTAGCTGGAGACTCGGGTTTGGTCTTTGTGCAGCTGCTAATTT 644
|||||||||||| ||||||||||||| ||| ||||||||||| ||||| |||||||||||
Sbjct 588 ATATACACAGGACAATGCTAGCTGGAAACTTGGGTTTGGTCTCTGTGCCGCTGCTAATTT 647
Query 645 GATCAGTTTCATAGTTTTCATTTCCGGGAAGAGATTCTACAAGCATGACAAACCAATGGG 704
|||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 648 GATCAGTTTCATCGTTTTCATTGCCGGGAAGAGATTCTACAAGCATGATAAACCCTTGGG 707
Query 705 AAGTCCCT-TCACAAGCCTTATCCGCGTCTTAGTCGCTGCTATACTGAAAATCAAGG-TA 762
|||||| | | |||||||| || ||||| ||||| |||||| | |||||| |||| ||
Sbjct 708 AAGTCCATAT-ACAAGCCTGATACGCGTTTTAGTTTCTGCTACAATGAAAAGAAAGGCTA 766
Query 763 GTGACCTCTTCCAAAGAAGAAGATTATCACCGGGAAG-T-TGAAAAA-GAATCCAAGACT 819
||| || || ||||| ||||| ||||| | | | | | ||||| || ||||||||
Sbjct 767 -TGATTTCATCAAAAGACGAAGACTATCATCACTATGGTCTCAAAAAAGAGGCCAAGACT 825
Query 820 TGTATTGGAATGCCTTCCAAGAGCTTCAGGTTTTTGAACCGTGCAGCATTAAAGAGCGAA 879
| || | |||||| ||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 826 TCTACTACAATGCCCTCCAAGAGCTTCAGGTTCTTGAACCGTGCAGCATTGAAGACCGAA 885
Query 880 -AAGGACTTAAATCA-AGAAGATGGCTTA-TGTCATAACCCT-TGGAGGTTATGTTCTGT 935
||| | ||||| | || | || || | | | ||||| | |||||| |||| |||||
Sbjct 886 GAAG-ATTTAAACCCGAGCGG-TGACTCAAT-TAATAACA-TGTGGAGGCTATGCTCTGT 941
Query 936 TGAGGAAGTAGAAGATTTTAAATCTGTTCT-CAGAGTTCTTCCTCTATGGTTAGCAATCT 994
| | |||||||||||||| ||| | ||||| | || || | ||||| ||| ||| ||
Sbjct 942 TCAAGAAGTAGAAGATTTCAAAGCCGTTCTAC-GACTTGTCCCTCTCTGGGCAGCCGTCA 1000
Query 995 TATTCGTTGGAACTTCCAT-TGGT-GTCCAAGCAAGCATGACGGTTCTCCAAGCTCTGGT 1052
| ||| | | ||| || | ||| || ||| || |||||||| ||||||||| ||||
Sbjct 1001 TGTTCCTCAGCACT-CC-TGTGGCAGTGCAAATGAGTATGACGGTCCTCCAAGCTTTGGT 1058
Query 1053 AACAGACCGAGGACTCGACTCTAAATTTAAAGTCCCGGCCGGGTCTCTACAAGTAATAGT 1112
| ||||| | ||| | | | | || |||||| | ||||||||||| ||||| |||||
Sbjct 1059 CATGGACCGCGAACTTGGCCCGCACTTCAAAGTCTCTGCCGGGTCTCTGCAAGTCATAGT 1118
Query 1113 ACTCATCTCTTCATGCGTCTTTCTCGTGCTCAATAACTGGACTATTTATCCCATCTATCA 1172
|||||||||| ||| |||||| || || |||| ||||||| ||| |||||||| || ||
Sbjct 1119 ACTCATCTCTGGATGTGTCTTTATCATGGTCAACAACTGGATTATCTATCCCATGTACCA 1178
Query 1173 GAAGATAACTCAT-AAAC-AGCTGACACCACTGCAACAAGTCGGTATAGGCCAAGTTTTC 1230
|||| || || |||| | |||||||| || |||||||| || || ||||| |||||
Sbjct 1179 GAAGCTAT-TCCGCAAACCA-CTGACACCGCTTCAACAAGTTGGGATTGGCCACGTTTTG 1236
Query 1231 AACATCCTTAGCATGGCAATCTCCGCCATCGTGGAAGCAAAAAGGCTGAAAACAGTTGAA 1290
| |||||| |||||||| || || ||||| |||||||||| ||||||||||||||||||
Sbjct 1237 ACCATCCTAAGCATGGCGATATCAGCCATTGTGGAAGCAAGGAGGCTGAAAACAGTTGAA 1296
Query 1291 AATGAGCA-TCCTATGTCAGTGTTATGGCT-GTTACCACCTCTTGTGATAGTTGGAATTG 1348
|||| || ||||||||||||| ||||||| ||| || |||| ||||| |||||||| |
Sbjct 1297 AATG-GCCGTCCTATGTCAGTGCTATGGCTAGTT-CCTGCTCTCGTGATGGTTGGAATAG 1354
Query 1349 GCGATGCCTTTCATTATATGGCGAATGTTGCAGTGTTCTATGGAGAGTTCCCTGAGTCTA 1408
|||| |||||||||| | |||||| ||||||| ||||||||||| ||||| ||||||
Sbjct 1355 GCGAGGCCTTTCATTTTCCCGCGAATATTGCAGTATTCTATGGAGAATTCCCGGAGTCTC 1414
Query 1409 TGAGGAACACAGCAACCTC-TGTGACCTCGGTGGCGTTTGGAATCTCCTTCTATTTAAGT 1467
|||||||||| || || || | | ||||| |||| | |||||||||| |||||| || |
Sbjct 1415 TGAGGAACACCGCGACATCAT-TAACCTCTGTGGTGATTGGAATCTCTTTCTATCTATGC 1473
Query 1468 ACAGCTCTAATAAA-CTTGATACAGAGGACCACC 1500
|||||| | || | || ||| ||||||||||||
Sbjct 1474 ACAGCTATTATCGATCT-GATCCAGAGGACCACC 1506
> Ahg484953 jgi|Araly1|484953|fgenesh2_kg.5__945__AT3G45690.1
Length=1545
Score = 848 bits (459), Expect = 0.0
Identities = 1010/1268 (80%), Gaps = 70/1268 (6%)
Strand=Plus/Plus
Query 53 GCAAACGCGGTGGCTGCATCACTTTTCCGTTCATGATAGCTACATTGTTAGGTAT-TTCA 111
|||| ||||||||||| | |||||||| |||||||| ||||| |||||||| | | ||
Sbjct 56 GCAATCGCGGTGGCTGGAAAACTTTTCCATTCATGATCGCTACGTTGTTAGGCCTGTCCA 115
Query 112 GTGA-CTTC-TTATGGATGGGTACTGAACTTGA-TTGTCTTCTTGATCGAGGAATAT-AA 167
| | |||| || ||||||||| ||||||| | | |||||| | ||||| | || | ||
Sbjct 116 -T-AGCTTCATT-CGGATGGGTAATGAACTT-AGTCGTCTTCCTAATCGATGTAT-TCAA 170
Query 168 CATCAAGAGCATAGCTGCTGCTCAGATTTCAAACATTGTCAATGGATGTCTCAGCATGTT 227
|||||||||||| |||||| | ||||||||||| ||||| ||||||||| | ||||||||
Sbjct 171 CATCAAGAGCATCGCTGCTACGCAGATTTCAAATATTGTTAATGGATGTGTGAGCATGTT 230
Query 228 GCCTGTTGTTACAGCCATTCTCGCTGATTCTTTCTTTGGAAACATTCCTGTAATCTCGGC 287
|||||||||| |||||||||| |||||||||||||| |||||||| || || |||||||
Sbjct 231 GCCTGTTGTTGCAGCCATTCTAGCTGATTCTTTCTTCGGAAACATACCCGTCATCTCGG- 289
Query 288 T-TCTGCTTTCATTTCTCTGCTTGGCATCTTTCTCTTGA-CTCTGATCTCATCTTTCGAA 345
| ||||| ||||||||| ||||||||||| ||||||||| || ||||| ||||||| ||
Sbjct 290 TGTCTGCCTTCATTTCTTTGCTTGGCATCCTTCTCTTGACCT-TGATCACATCTTTTGAC 348
Query 346 AACTTGAGACCTAGACCGTGTGAAACAGGCTCAATCCTATGCCAATCGCCATCAAAACTC 405
||||||||||| ||||||| |||| || ||||| ||||||||||||||||||||||||
Sbjct 349 TACTTGAGACCTCCACCGTGTCAAACGGGGTCAATTCTATGCCAATCGCCATCAAAACTC 408
Query 406 CACCTCGGGGTCTTGTATGCAGCGTTAGCTCTAGTGACTGC--TGGAACTTCTGGGACAC 463
|| |||||| |||||||| |||| ||||||||||||| | | |||| | ||||||| |
Sbjct 409 CAGCTCGGGATCTTGTATACAGCCTTAGCTCTAGTGA-T-CATTGGATCAGCTGGGACGC 466
Query 464 GGGTGGCTTTGGCATCTGCTGGTGCAAACCAGTATGATAAACCTAGAG-ACAAAGGAAGC 522
|| | | |||||||| || ||||||||||| ||||| ||||||| || || ||||||||
Sbjct 467 GGTTCACCTTGGCATCCGCGGGTGCAAACCAATATGAGAAACCTAAAGAAC-AAGGAAGC 525
Query 523 TTCTTCAACTGGTACTTCCTCACGGTAAA-TACAGGCGCGATTATTAGCGCGACAGCAAT 581
||||||||||||||||||||||| || | | | || || |||| | |||| ||||||||
Sbjct 526 TTCTTCAACTGGTACTTCCTCACACTATACT-CTGGAGCTATTACTGGCGCAACAGCAAT 584
Query 582 TGTATATACACAGGAGAATGCTAGCTGGAGACTCGGGTTTGGTCTTTGTGC-AGCTGCTA 640
||||||||||||||| ||||||||||||| ||| || |||||||||||||| | | ||||
Sbjct 585 TGTATATACACAGGAAAATGCTAGCTGGAAACTTGGTTTTGGTCTTTGTGCCATC-GCTA 643
Query 641 ATTTGATCAGTTTCATAGTTTTCATTTCCGGGAAGAGATTCTACAAGCATGACAAACCAA 700
|| ||||||||||||| |||||| | || ||||||||||||||||||||||||||||| |
Sbjct 644 ATCTGATCAGTTTCATCGTTTTCGTCTCTGGGAAGAGATTCTACAAGCATGACAAACCCA 703
Query 701 TGGGAAGTCCCTTCAC-AAGCCTTATCCGCGTCT-TAGTCGCTGCTATA-CTGAAAATCA 757
||||||| |||||||| || | | ||||| || | || ||||||||| | | |||| |
Sbjct 704 TGGGAAGCCCCTTCACCAATC-TGATCCGTGT-TGTATTCGCTGCTACAGCA-AAAAGGA 760
Query 758 AGG-TAGTGACCTCTTCCAAAGAAGAAGATTATCACC--GGGAAGTTGAAAAAGAATCCA 814
||| | || | || |||| ||||||||| ||||||| ||| ||| || |||| ||
Sbjct 761 AGGCT-GTAATTTCATCCAGAGAAGAAGACTATCACCATGGGC--TTGGAAGAGAAAGCA 817
Query 815 AGACTTGTATTGGAATGCCTTCCAAGAGCTTCAGGTT-TTTGAACCGTGCAGCATTAAAG 873
|||| | | || |||||| |||| |||||||||||| ||| |||||||||||||||||
Sbjct 818 AGACGTCTGCTGCAATGCCCTCCACGAGCTTCAGGTTCTTT-AACCGTGCAGCATTAAAA 876
Query 874 AGCGAAAAGGACTTAAATCAAGAAGATGGCTTATGTCATAACC-CTTGGAGGTTATGTTC 932
| |||| | |||| | || ||| ||||| || ||||| |||| ||
Sbjct 877 ACCGAAGACGACT-----C-------TG--TTA----ATAACATCT-GGAGGCTATGCTC 917
Query 933 TGTTGAGGAAGTAGAAGATTTTAAATCTGTTCTCAGAGTTCTTCCTCTATGGTTAGCAAT 992
||| | |||||||||||||||||| ||||| || ||||||| ||||| | | |||| ||
Sbjct 918 GGTTCAAGAAGTAGAAGATTTTAAAGCTGTTTTCCGAGTTCTCCCTCTGTTGCTAGCCAT 977
Query 993 CTTATTCGTTGGAACTTCCATTGGTG-TCCAAGCAAGCATGACGGTTCTCCAAGCTCTGG 1051
| | |||||| | ||| |||| |||| | ||| ||||| ||| | || |||||||| |
Sbjct 978 CATCTTCGTTAGTACTCCCAT-GGTGATGCAAACAAGCTTGATTATACTTCAAGCTCTAG 1036
Query 1052 TAACAGACCGAGGACTCGACTCTAAATTTAAAGTCCCGGCCGGGTCTCTACAAGTAATAG 1111
| |||||||| || || | |||| | || ||| ||||||||||||| || ||||| ||||
Sbjct 1037 TCACAGACCGTGGGCTTGGCTCTCACTTCAAAATCCCGGCCGGGTCCCTCCAAGTTATAG 1096
Query 1112 TACTCATCTCTTCATGCGTCTTTCTCGTGCTCAATAACTGGACTAT-T-TATCCCATCTA 1169
|| ||||| | ||||| || || | || | || || | || | | |||||||| ||
Sbjct 1097 TAATCATCACCGCATGCATCGTTATTGTTATGAACAATTTC-CT-TGTCTATCCCATGTA 1154
Query 1170 TCAGAAGATAACTCATAAAC-AGCTGACACCACTGCAACAAGTCGGTATAGGCCAAGTTT 1228
|| ||| |||| |||| | | | || || || ||| |||||||||||||||| ||||
Sbjct 1155 CCACAAGTTAACCCATACGCCAT-TAACCCCGCTTCAAAAAGTCGGTATAGGCCACGTTT 1213
Query 1229 TCAACATCCTTA-GCATGGCAATCTCCGCCATCGTGGAAGCAAAAAGGCTGAAAACAGTT 1287
||| ||| ||| ||||||| || |||||| | || |||||||| |||||||||||||||
Sbjct 1214 TCATCATT-TTAAGCATGGCGATATCCGCCGTTGTCGAAGCAAAGAGGCTGAAAACAGTT 1272
Query 1288 GAA-AATG 1294
|| ||||
Sbjct 1273 -AATAATG 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62544182290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5