BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45750.1 Length=2488 Score E Sequences producing significant alignments: (Bits) Value Ahg484955 jgi|Araly1|484955|fgenesh2_kg.5__947__AT3G45750.1 3205 0.0 Ahg323241 jgi|Araly1|323241|fgenesh1_pm.C_scaffold_5000785 575 6e-163 > Ahg484955 jgi|Araly1|484955|fgenesh2_kg.5__947__AT3G45750.1 Length=2386 Score = 3205 bits (1735), Expect = 0.0 Identities = 2193/2409 (91%), Gaps = 51/2409 (2%) Strand=Plus/Plus Query 96 CGGGACCGTAAAACTGCATCCTCTCCGACT-AG-TT-TCATCGCC-TTTTCCTCTGCCTA 151 |||||||||||||||| ||| ||||||||| || || || |||| |||||||||| | | Sbjct 1 CGGGACCGTAAAACTGTATCATCTCCGACTAAGTTTGTCGCCGCCTTTTTCCTCTGTCAA 60 Query 152 TAACATTCTCCGGTTTAGTATCTCTGCTTAA-G--TAGAGA-GTAATTATGGGCTCTCGA 207 ||||||||||||||||||| |||||||||| | |||||| || ||||||| ||| ||| Sbjct 61 AAACATTCTCCGGTTTAGTACCTCTGCTTAAGGATTAGAGAGGT-ATTATGGACTCGCGA 119 Query 208 GGAAATGTGGCTGAGGATAAAAATGTTTCGAGTAAAGTGATTCGAAAGAAGGTGAACAAC 267 || ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| Sbjct 120 GGGAATGTGGCTGAGGATAAGAATGTTTCGAGTAAAGCGATTCGAAAGAAGGTTAACAAC 179 Query 268 ACTGTGTCAATAGCACTCAAGAGATATAAGATTGATAGTTATATCTTACTGGATCTTGAT 327 ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| Sbjct 180 ACTGTGTCAATAGCATTAAAGAGATATAAGATTGATAGTTATATCTTACTGGACCTTGAT 239 Query 328 AAGGTATTAAATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACAATACTAGG 387 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 240 AAGGTATTAAATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACGATACTAGG 299 Query 388 AAGGAATTGGTCAAAAACCTTAATACTATGGCTTTAGATATTTATGGTAAGTCTGAAGAG 447 ||||||||||| |||||||||||| |||||||| |||||||||||||||| || |||||| Sbjct 300 AAGGAATTGGTGAAAAACCTTAATGCTATGGCTATAGATATTTATGGTAATTCGGAAGAG 359 Query 448 AGCAGCCCGGTCCTTGAGGCGTATGGGTCTTTTGTGATGGATATGTATTCATCTCAGAGT 507 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 360 AGCAGCCCGGTCCTTGAGGCGTATGGGTCTTTCGTGATGGATATGTATTCCTCTCAGAGT 419 Query 508 GATTTAGATGTGTCTATTAACTTTGGTAATGGAACATCTGAGA-TTCCTCGTGAAAAGAA 566 ||||| || |||||||||||||| ||||||||||||||||| | |||||||||||||||| Sbjct 420 GATTTGGACGTGTCTATTAACTTCGGTAATGGAACATCTGA-ACTTCCTCGTGAAAAGAA 478 Query 567 GCTCGAGATACTTAAAAGATTTGCTAAGAAGCTCCGTTCTCTGCAGGGAGAAGGGCAGGT 626 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || Sbjct 479 GCTCGAGATACTTAAAAGATTTGCAAAGAAGCTCCGGGCTCTGCAGGGAGAAGGGCATGT 538 Query 627 TAAGAATGTTGAATCTATCTTCTCTGCTAAAGTGCCAATTGTCAAATTCTCTGATCAAGG 686 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 539 TAAGAATGTTGAATCTATCTTCTCTGCTAAGGTGCCAATTATCAAATTCTCTGATCAAGG 598 Query 687 GACTGGTGTTGAGTGTGATTTGTCAGTCGAAAATAAAGATGGCATTTTAAATTCACAGAT 746 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 599 GACTGGTGTTGAATGTGATTTGTCAGTCGAAAATAAAGACGGCATTTTAAATTCACAGAT 658 Query 747 CGTTCGCATCATATCTCAAATTGATGGCAGGTTTCAAAAACTTTGTCTGTTGGTTAAGCA 806 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 659 CGTTCGCATCATATCTCAAATTGATGGCAGGTTTCAAAAACTTTGTATATTGGTTAAGCA 718 Query 807 TTGGGCCAAAGCTCATGAAGTTAACAGTGCGCTACACCGAACCCTGAATTCTGTATCTAT 866 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TTGGGCCAAAGCTCATGAAGTTAACAGTGCGCTACACCGAACCCTGAATTCTGTATCTAT 778 Query 867 AACATTGCTAGTCGCTCTTCACTTACAGACTCAAAATCCTCCCATTTTACCTCCATTCTC 926 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 AACATTGCTAGTCGCTCTTCACTTACAGACTCAAAATCCTCCCATTTTACCTCCATTCTC 838 Query 927 TATGCTATTGAAAGATGGAATGGATCCTCCTAACGTGGAGAAAAGGGCACAAAAGTTCTT 986 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 839 TATGCTATTTAAAGATGGAATTGATCCTCCTAACGTGGAGAAAAGGGCACAAAAGTTCTT 898 Query 987 AAACTGGGGACAGCGTAATCAGGAATCTCTGGGTAGACTGTTTGCAACCTTTTTTATTAA 1046 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 AAACTGGGGACAGCGTAATCAGGAATCTCTGGGTAGACTGTTTGCAACCTTTTTTATTAA 958 Query 1047 GTTACAATCTGTAGAATTCCTTTGGAGACAAGGGCTCTGCGTCAGTGTGCTGAATGGTCT 1106 ||||||||| ||||||||||| ||||| ||||||||||||||||||||||| || ||||| Sbjct 959 GTTACAATCCGTAGAATTCCTCTGGAGGCAAGGGCTCTGCGTCAGTGTGCTAAACGGTCT 1018 Query 1107 TTGGATATCTAAAAAGTGGAAAAAAGTTGGCGTTGGATCCATTAGTGTTGAGGATTTTAC 1166 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1019 TTGGATATCTAAAAAGTGGAAAAAAGTTGGGGTTGGATCCATTAGTGTTGAGGATTTTAC 1078 Query 1167 CAACAT-ATCTCAAAATGTCGCAAGACGGGTTAATGGTGCAGGAGCCAAAAAGATATACA 1225 ||| | | |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1079 TAACGTGA-CTCAAAATGTCGCAAGGCGGGTTAATGGTGCAGGAGCCAAAAAGATATACA 1137 Query 1226 GCTCCATAAACAGAACCGTTGAAGACATCTTTGAATTCCTCAATGACAAGGTTGCTGGAA 1285 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1138 GCTCCATAAACAGAACCGTCGAAGACATCTTTGAATTCCTCAATGACAAGGTTGCTGGAA 1197 Query 1286 CAGATCTCAGACATAGGTTGTTTGGCAAAGGATCTGTTGTGCAGATTCCTCCTGTGGCGC 1345 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 1198 CAGATCTCAGACATAGGTTGTTTGGCAAAGGAGCTGTTGTGCAGATTCCTCCTGGGGCGC 1257 Query 1346 CACTTAATGGAAAGACCGCTGGAATACACAAGGTGTCTGGCCAACAAGCTGTGGTGCAGC 1405 |||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||| Sbjct 1258 CACTTAATGGAAAGACTGCTGGAATACACACGGTGTCTGGCCAACAAGCTGTTGTGGAGC 1317 Query 1406 CTTC-TCCTCCTGTGCCGC-GACTCAATGGCAAAATTGCTGGAACACATCGCAAACAGAA 1463 || | |||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1318 CT-CGTCCTCCTGTGCCGCCG-CTCAATGGCAAAATTGCTGGAACACATCGCAAACAGAA 1375 Query 1464 GGTGTTTGCGCAACAAGCAGTTGTGGAGCCTCGTCCTCCTGTGCTGCCACTTAATGGCAA 1523 ||||||||| | |||| |||||||||||||||||| |||||||| |||||| ||||||| Sbjct 1376 GGTGTTTGCCCGACAACCAGTTGTGGAGCCTCGTCTTCCTGTGCCGCCACTCGATGGCAA 1435 Query 1524 TATCGCTGGCACACATTTCAGACATGAGTCGTTTCGCCAACAAGCTGT-GTTGCAGCCTC 1582 || ||||||||||||||||||||| |||||||| ||||||||||||| || |||||||| Sbjct 1436 AATTGCTGGCACACATTTCAGACATAAGTCGTTTGGCCAACAAGCTGTTGT-GCAGCCTC 1494 Query 1583 TTCCTCCTCTGCGGCCAGTCAATGG-AAGTATTGGTGGAACTCATTTCAGAGATAGGTTG 1641 | |||| |||||||| ||||||| || ||| | ||||||||||||||||||||||||| Sbjct 1495 --C-TCCTGTGCGGCCACTCAATGGTAA-TATCGTTGGAACTCATTTCAGAGATAGGTTG 1550 Query 1642 TTTGACCAACAAGTACTTGTGGAGCCTCGTCCTCTTCTGCCGCCATTCAGTGGCAGTATC 1701 ||||||||||||||||| |||||| ||| |||||||||||||||||||| |||| |||| Sbjct 1551 TTTGACCAACAAGTACTGGTGGAGTCTCATCCTCTTCTGCCGCCATTCAACGGCAATATC 1610 Query 1702 GCTGAAACGCATTTCAGACATAGGTCGTTTCCCCAAGAAGCAGTTCTGGACCCTCGTCCT 1761 ||| ||||||||||||| ||||||||||| |||| |||||||||||| ||||||||| Sbjct 1611 ACTGGAACGCATTTCAGATATAGGTCGTTTGACCAACCAGCAGTTCTGGAGCCTCGTCCT 1670 Query 1762 TCTGTGCAGTCGCGCAACGTTTACTCACAACAACTTCACAATAACTACAGAAACGGTTTC 1821 |||||| ||| | |||| |||||||||| |||||||||||||||||||||||||| ||| Sbjct 1671 CCTGTGCCGTCTCTCAACATTTACTCACATCAACTTCACAATAACTACAGAAACGGGTTC 1730 Query 1822 AGCGGTCCTCCTGAAGAACATCACACCAAAAGACTTTGTTTGGGAAACCGCTACAGAGCT 1881 || |||||||||||||||||| ||| ||||||| |||||||||||||| |||||||||| Sbjct 1731 AGTGGTCCTCCTGAAGAACATTACAGCAAAAGAGTTTGTTTGGGAAACAACTACAGAGCT 1790 Query 1882 CTAGAAGAAACGGGTAACTGGAGAGAGGAAGAGAGATACGAAGATCCCAGAGGAAAACGA 1941 ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1791 GTAGAAGAAATGGGTCAGTGGAGAGAGGAAGAGAGATACGAAGATCCCAGAGGAAAACGA 1850 Query 1942 AACAGGTATGTCGGAAACTTTAATGGGTTAGAAGAGTTTCGTGAAATCCCCCGGTTTGGA 2001 ||||||||| | ||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1851 AACAGGTATATTGGAAACTTTAATGGGTTTGAAGAGTTTCGTGAAATTCCCCGGTTTGGA 1910 Query 2002 ATTCATAGTAACCCTTTAGATGATCCTTATAGACAAGTCCCTTTGAATGCTGGAACAAAT 2061 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1911 ATCCATAGTAACCCTTTAGATGATCCTTATAGACAAGTCCCTTTGAATGCTGGAACAAAT 1970 Query 2062 GGTCATTTGGTTCACCATAGGCATGATGGTAGATATAATGGTGAAGAACCAATGCATGTG 2121 ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 1971 GGTCATTTGGTTCGCCATAGGCATGATGGTAGATATAGTCGTGAAGAACCAATGCATGTG 2030 Query 2122 GGACAATGGCAAGACTACACTCGTAGAGTTGGTTCGCCACCACTACAACAAACCCCA-CC 2180 |||| ||||||||||||| ||||||| ||||| ||||||||| | ||| |||| || Sbjct 2031 GGACCGTGGCAAGACTACAATCGTAGAATTGGTCCGCCACCAC--CG-CAA-CCCCTTCC 2086 Query 2181 ACCTTATGATAGAGTTA-GTTATGAAGATTTT--CGT-CCTCATTTAGGTAGATCGTTTT 2236 |||||||| | | || || | || | || | |||||||| ||||||||||||| Sbjct 2087 TCCTTATGAGA-ATTTTCGTCCTCAAAACCTTAACCAACCTCATTTTGGTAGATCGTTTT 2145 Query 2237 ACCATTAGGGTTTTTGGTCAGCAAAGTTAAAAACCAATCACCA-ACCAttt--ttttAAG 2293 || | ||||||||||| |||||||||| |||||||| || | | | || ||||| | Sbjct 2146 ACAAGTAGGGTTTTTGAACAGCAAAGTTCAAAACCAACCAA-ATATAAATTCATTTTAGG 2204 Query 2294 -ATGTTTATAACTTCATATTATATGAAGC--CGGAATCAATATTAG-AAGGGAA-TTGAT 2348 | | ||| | | || | | | | ||| | ||| | | ||| ||| ||||| Sbjct 2205 GAGGA--ATA-CAGG-T-TT-TCGGTA-CTTCGGTTTAAATGTGGGGAAGTGAAATTGAT 2257 Query 2349 GTAACTACAGTTTTGGGTGATGAGAAAGTGTCATGAATGTTGTATTTTACTGTTTAT-TC 2407 ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || Sbjct 2258 GTAACTACAGTTTTGGGTGCTGAGAAAGTGTCATGAATGTTGTATGTTACTGTTTAGCTC 2317 Query 2408 TGGATTCGGTTTAAATTTGGATTGGAGGATTTGTAACCAACTTTTATGTAAGAAATCATT 2467 ||||||||||| |||||||||||||||||||| | ||||| |||||||| ||| |||||| Sbjct 2318 TGGATTCGGTTAAAATTTGGATTGGAGGATTTTTTACCAATTTTTATGTTAGATATCATT 2377 Query 2468 TGAAAGTAA 2476 ||||||||| Sbjct 2378 TGAAAGTAA 2386 > Ahg323241 jgi|Araly1|323241|fgenesh1_pm.C_scaffold_5000785 Length=1221 Score = 575 bits (311), Expect = 6e-163 Identities = 505/596 (85%), Gaps = 23/596 (4%) Strand=Plus/Plus Query 210 AAATGTGGCTGAGGATAAA-AATGTTTCGAGTAAAGTGATTCGAAAGAAGGTGAACAACA 268 ||| ||||||||||| ||| |||||||||||||||| ||||| |||||| ||||| |||| Sbjct 15 AAAGGTGGCTGAGGA-AAAGAATGTTTCGAGTAAAGGGATTCAAAAGAAAGTGAAGAACA 73 Query 269 CTGTGTCAATAGCACTC-AAGAGATATAAGATTGATAGTTATATCTTACTGGATCTTGAT 327 || |||| |||||| || || |||||||| |||||||||||| ||||||| || |||||| Sbjct 74 CTATGTCCATAGCA-TCTAAAAGATATAACATTGATAGTTATGTCTTACTAGACCTTGAT 132 Query 328 AAGGTATTAAATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACAATACTAGG 387 || |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 133 AATGTATTAGATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACGATACTAGG 192 Query 388 AAGGAATTGGTCAAAAACCTTAATACTATGGCTTTAGATATTTATGGTAAGTCTGAAGAG 447 ||||||||||| |||||||| ||| |||||||| ||||||||| | | | ||||| Sbjct 193 AAGGAATTGGTGAAAAACCTCAATGCTATGGCTATAGATATTT-T--T--G----AAGAG 243 Query 448 AGCAGCCCGGTCCTTGAGGCGTATGGGTCTTTTGTGATGGATATGTATTCATCTCAGAGT 507 ||||| |||||||||||||| ||||||||||| |||||||||| || ||| | || || Sbjct 244 AGCAGACCGGTCCTTGAGGCATATGGGTCTTTCGTGATGGATACGTTTTCCCCGCAAAGG 303 Query 508 GATTTAGATGTGTCTATTAACTTTGGTAATGGAACATCTGAGA-TTCCTCGTGAAAAGAA 566 ||||| ||||| |||||||||||||||| |||||||||||| | || |||||| |||||| Sbjct 304 GATTTGGATGTATCTATTAACTTTGGTAGTGGAACATCTGA-ACTTTCTCGTGTAAAGAA 362 Query 567 GCTCGAGATACTTAAAAGATTTGCTAA-GAAGCTCCGTTCTCTGCAGGGAG-AAGGGCAG 624 |||||| || ||| |||||||||| || ||||||||| ||| || |||| | ||| | Sbjct 363 GCTCGAAATTCTTGAAAGATTTGC-AACGAAGCTCCGCTCTTTGGAGGG-GCAAGTGTTT 420 Query 625 GTTAAGAATGTTGAATCTATCTTCTCTGCTAAAGTGCCAATTGTCAAATTCTCTGATCAA 684 |||| |||||||| | |||||||| ||||| ||||||||||||||||||| ||||||| Sbjct 421 GTTAGGAATGTTGTACCTATCTTCAATGCTAGGGTGCCAATTGTCAAATTCTGTGATCAA 480 Query 685 GGGACTGGTGTTGAGTGTGATTTGTCAGTCGAAAATAAAGATGGCATTTTAAATTCACA- 743 |||||||| |||| ||||||||| | ||||||| ||||| ||||||||| ||| || Sbjct 481 AGGACTGGTATTGAATGTGATTTGGCTGTCGAAAGCAAAGACGGCATTTTAGTTTC-CAA 539 Query 744 GATCGTTCGCATCATATCTCAAATTGATGGCAGGTTTCAAAAACTTTGTCT-GTTG 798 |||| |||| || |||||||||||||||| |||||||| |||||||| || |||| Sbjct 540 GATCATTCGTATTATATCTCAAATTGATGATAGGTTTCAGAAACTTTG-CTTGTTG 594 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93778183190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5