BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45750.1
Length=2488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484955 jgi|Araly1|484955|fgenesh2_kg.5__947__AT3G45750.1 3205 0.0
Ahg323241 jgi|Araly1|323241|fgenesh1_pm.C_scaffold_5000785 575 6e-163
> Ahg484955 jgi|Araly1|484955|fgenesh2_kg.5__947__AT3G45750.1
Length=2386
Score = 3205 bits (1735), Expect = 0.0
Identities = 2193/2409 (91%), Gaps = 51/2409 (2%)
Strand=Plus/Plus
Query 96 CGGGACCGTAAAACTGCATCCTCTCCGACT-AG-TT-TCATCGCC-TTTTCCTCTGCCTA 151
|||||||||||||||| ||| ||||||||| || || || |||| |||||||||| | |
Sbjct 1 CGGGACCGTAAAACTGTATCATCTCCGACTAAGTTTGTCGCCGCCTTTTTCCTCTGTCAA 60
Query 152 TAACATTCTCCGGTTTAGTATCTCTGCTTAA-G--TAGAGA-GTAATTATGGGCTCTCGA 207
||||||||||||||||||| |||||||||| | |||||| || ||||||| ||| |||
Sbjct 61 AAACATTCTCCGGTTTAGTACCTCTGCTTAAGGATTAGAGAGGT-ATTATGGACTCGCGA 119
Query 208 GGAAATGTGGCTGAGGATAAAAATGTTTCGAGTAAAGTGATTCGAAAGAAGGTGAACAAC 267
|| ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||
Sbjct 120 GGGAATGTGGCTGAGGATAAGAATGTTTCGAGTAAAGCGATTCGAAAGAAGGTTAACAAC 179
Query 268 ACTGTGTCAATAGCACTCAAGAGATATAAGATTGATAGTTATATCTTACTGGATCTTGAT 327
||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 ACTGTGTCAATAGCATTAAAGAGATATAAGATTGATAGTTATATCTTACTGGACCTTGAT 239
Query 328 AAGGTATTAAATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACAATACTAGG 387
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 AAGGTATTAAATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACGATACTAGG 299
Query 388 AAGGAATTGGTCAAAAACCTTAATACTATGGCTTTAGATATTTATGGTAAGTCTGAAGAG 447
||||||||||| |||||||||||| |||||||| |||||||||||||||| || ||||||
Sbjct 300 AAGGAATTGGTGAAAAACCTTAATGCTATGGCTATAGATATTTATGGTAATTCGGAAGAG 359
Query 448 AGCAGCCCGGTCCTTGAGGCGTATGGGTCTTTTGTGATGGATATGTATTCATCTCAGAGT 507
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 360 AGCAGCCCGGTCCTTGAGGCGTATGGGTCTTTCGTGATGGATATGTATTCCTCTCAGAGT 419
Query 508 GATTTAGATGTGTCTATTAACTTTGGTAATGGAACATCTGAGA-TTCCTCGTGAAAAGAA 566
||||| || |||||||||||||| ||||||||||||||||| | ||||||||||||||||
Sbjct 420 GATTTGGACGTGTCTATTAACTTCGGTAATGGAACATCTGA-ACTTCCTCGTGAAAAGAA 478
Query 567 GCTCGAGATACTTAAAAGATTTGCTAAGAAGCTCCGTTCTCTGCAGGGAGAAGGGCAGGT 626
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||
Sbjct 479 GCTCGAGATACTTAAAAGATTTGCAAAGAAGCTCCGGGCTCTGCAGGGAGAAGGGCATGT 538
Query 627 TAAGAATGTTGAATCTATCTTCTCTGCTAAAGTGCCAATTGTCAAATTCTCTGATCAAGG 686
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 539 TAAGAATGTTGAATCTATCTTCTCTGCTAAGGTGCCAATTATCAAATTCTCTGATCAAGG 598
Query 687 GACTGGTGTTGAGTGTGATTTGTCAGTCGAAAATAAAGATGGCATTTTAAATTCACAGAT 746
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 599 GACTGGTGTTGAATGTGATTTGTCAGTCGAAAATAAAGACGGCATTTTAAATTCACAGAT 658
Query 747 CGTTCGCATCATATCTCAAATTGATGGCAGGTTTCAAAAACTTTGTCTGTTGGTTAAGCA 806
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 659 CGTTCGCATCATATCTCAAATTGATGGCAGGTTTCAAAAACTTTGTATATTGGTTAAGCA 718
Query 807 TTGGGCCAAAGCTCATGAAGTTAACAGTGCGCTACACCGAACCCTGAATTCTGTATCTAT 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTGGGCCAAAGCTCATGAAGTTAACAGTGCGCTACACCGAACCCTGAATTCTGTATCTAT 778
Query 867 AACATTGCTAGTCGCTCTTCACTTACAGACTCAAAATCCTCCCATTTTACCTCCATTCTC 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AACATTGCTAGTCGCTCTTCACTTACAGACTCAAAATCCTCCCATTTTACCTCCATTCTC 838
Query 927 TATGCTATTGAAAGATGGAATGGATCCTCCTAACGTGGAGAAAAGGGCACAAAAGTTCTT 986
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 839 TATGCTATTTAAAGATGGAATTGATCCTCCTAACGTGGAGAAAAGGGCACAAAAGTTCTT 898
Query 987 AAACTGGGGACAGCGTAATCAGGAATCTCTGGGTAGACTGTTTGCAACCTTTTTTATTAA 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAACTGGGGACAGCGTAATCAGGAATCTCTGGGTAGACTGTTTGCAACCTTTTTTATTAA 958
Query 1047 GTTACAATCTGTAGAATTCCTTTGGAGACAAGGGCTCTGCGTCAGTGTGCTGAATGGTCT 1106
||||||||| ||||||||||| ||||| ||||||||||||||||||||||| || |||||
Sbjct 959 GTTACAATCCGTAGAATTCCTCTGGAGGCAAGGGCTCTGCGTCAGTGTGCTAAACGGTCT 1018
Query 1107 TTGGATATCTAAAAAGTGGAAAAAAGTTGGCGTTGGATCCATTAGTGTTGAGGATTTTAC 1166
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1019 TTGGATATCTAAAAAGTGGAAAAAAGTTGGGGTTGGATCCATTAGTGTTGAGGATTTTAC 1078
Query 1167 CAACAT-ATCTCAAAATGTCGCAAGACGGGTTAATGGTGCAGGAGCCAAAAAGATATACA 1225
||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1079 TAACGTGA-CTCAAAATGTCGCAAGGCGGGTTAATGGTGCAGGAGCCAAAAAGATATACA 1137
Query 1226 GCTCCATAAACAGAACCGTTGAAGACATCTTTGAATTCCTCAATGACAAGGTTGCTGGAA 1285
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCTCCATAAACAGAACCGTCGAAGACATCTTTGAATTCCTCAATGACAAGGTTGCTGGAA 1197
Query 1286 CAGATCTCAGACATAGGTTGTTTGGCAAAGGATCTGTTGTGCAGATTCCTCCTGTGGCGC 1345
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1198 CAGATCTCAGACATAGGTTGTTTGGCAAAGGAGCTGTTGTGCAGATTCCTCCTGGGGCGC 1257
Query 1346 CACTTAATGGAAAGACCGCTGGAATACACAAGGTGTCTGGCCAACAAGCTGTGGTGCAGC 1405
|||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 1258 CACTTAATGGAAAGACTGCTGGAATACACACGGTGTCTGGCCAACAAGCTGTTGTGGAGC 1317
Query 1406 CTTC-TCCTCCTGTGCCGC-GACTCAATGGCAAAATTGCTGGAACACATCGCAAACAGAA 1463
|| | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CT-CGTCCTCCTGTGCCGCCG-CTCAATGGCAAAATTGCTGGAACACATCGCAAACAGAA 1375
Query 1464 GGTGTTTGCGCAACAAGCAGTTGTGGAGCCTCGTCCTCCTGTGCTGCCACTTAATGGCAA 1523
||||||||| | |||| |||||||||||||||||| |||||||| |||||| |||||||
Sbjct 1376 GGTGTTTGCCCGACAACCAGTTGTGGAGCCTCGTCTTCCTGTGCCGCCACTCGATGGCAA 1435
Query 1524 TATCGCTGGCACACATTTCAGACATGAGTCGTTTCGCCAACAAGCTGT-GTTGCAGCCTC 1582
|| ||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||
Sbjct 1436 AATTGCTGGCACACATTTCAGACATAAGTCGTTTGGCCAACAAGCTGTTGT-GCAGCCTC 1494
Query 1583 TTCCTCCTCTGCGGCCAGTCAATGG-AAGTATTGGTGGAACTCATTTCAGAGATAGGTTG 1641
| |||| |||||||| ||||||| || ||| | |||||||||||||||||||||||||
Sbjct 1495 --C-TCCTGTGCGGCCACTCAATGGTAA-TATCGTTGGAACTCATTTCAGAGATAGGTTG 1550
Query 1642 TTTGACCAACAAGTACTTGTGGAGCCTCGTCCTCTTCTGCCGCCATTCAGTGGCAGTATC 1701
||||||||||||||||| |||||| ||| |||||||||||||||||||| |||| ||||
Sbjct 1551 TTTGACCAACAAGTACTGGTGGAGTCTCATCCTCTTCTGCCGCCATTCAACGGCAATATC 1610
Query 1702 GCTGAAACGCATTTCAGACATAGGTCGTTTCCCCAAGAAGCAGTTCTGGACCCTCGTCCT 1761
||| ||||||||||||| ||||||||||| |||| |||||||||||| |||||||||
Sbjct 1611 ACTGGAACGCATTTCAGATATAGGTCGTTTGACCAACCAGCAGTTCTGGAGCCTCGTCCT 1670
Query 1762 TCTGTGCAGTCGCGCAACGTTTACTCACAACAACTTCACAATAACTACAGAAACGGTTTC 1821
|||||| ||| | |||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct 1671 CCTGTGCCGTCTCTCAACATTTACTCACATCAACTTCACAATAACTACAGAAACGGGTTC 1730
Query 1822 AGCGGTCCTCCTGAAGAACATCACACCAAAAGACTTTGTTTGGGAAACCGCTACAGAGCT 1881
|| |||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||
Sbjct 1731 AGTGGTCCTCCTGAAGAACATTACAGCAAAAGAGTTTGTTTGGGAAACAACTACAGAGCT 1790
Query 1882 CTAGAAGAAACGGGTAACTGGAGAGAGGAAGAGAGATACGAAGATCCCAGAGGAAAACGA 1941
||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 GTAGAAGAAATGGGTCAGTGGAGAGAGGAAGAGAGATACGAAGATCCCAGAGGAAAACGA 1850
Query 1942 AACAGGTATGTCGGAAACTTTAATGGGTTAGAAGAGTTTCGTGAAATCCCCCGGTTTGGA 2001
||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1851 AACAGGTATATTGGAAACTTTAATGGGTTTGAAGAGTTTCGTGAAATTCCCCGGTTTGGA 1910
Query 2002 ATTCATAGTAACCCTTTAGATGATCCTTATAGACAAGTCCCTTTGAATGCTGGAACAAAT 2061
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 ATCCATAGTAACCCTTTAGATGATCCTTATAGACAAGTCCCTTTGAATGCTGGAACAAAT 1970
Query 2062 GGTCATTTGGTTCACCATAGGCATGATGGTAGATATAATGGTGAAGAACCAATGCATGTG 2121
||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1971 GGTCATTTGGTTCGCCATAGGCATGATGGTAGATATAGTCGTGAAGAACCAATGCATGTG 2030
Query 2122 GGACAATGGCAAGACTACACTCGTAGAGTTGGTTCGCCACCACTACAACAAACCCCA-CC 2180
|||| ||||||||||||| ||||||| ||||| ||||||||| | ||| |||| ||
Sbjct 2031 GGACCGTGGCAAGACTACAATCGTAGAATTGGTCCGCCACCAC--CG-CAA-CCCCTTCC 2086
Query 2181 ACCTTATGATAGAGTTA-GTTATGAAGATTTT--CGT-CCTCATTTAGGTAGATCGTTTT 2236
|||||||| | | || || | || | || | |||||||| |||||||||||||
Sbjct 2087 TCCTTATGAGA-ATTTTCGTCCTCAAAACCTTAACCAACCTCATTTTGGTAGATCGTTTT 2145
Query 2237 ACCATTAGGGTTTTTGGTCAGCAAAGTTAAAAACCAATCACCA-ACCAttt--ttttAAG 2293
|| | ||||||||||| |||||||||| |||||||| || | | | || ||||| |
Sbjct 2146 ACAAGTAGGGTTTTTGAACAGCAAAGTTCAAAACCAACCAA-ATATAAATTCATTTTAGG 2204
Query 2294 -ATGTTTATAACTTCATATTATATGAAGC--CGGAATCAATATTAG-AAGGGAA-TTGAT 2348
| | ||| | | || | | | | ||| | ||| | | ||| ||| |||||
Sbjct 2205 GAGGA--ATA-CAGG-T-TT-TCGGTA-CTTCGGTTTAAATGTGGGGAAGTGAAATTGAT 2257
Query 2349 GTAACTACAGTTTTGGGTGATGAGAAAGTGTCATGAATGTTGTATTTTACTGTTTAT-TC 2407
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||
Sbjct 2258 GTAACTACAGTTTTGGGTGCTGAGAAAGTGTCATGAATGTTGTATGTTACTGTTTAGCTC 2317
Query 2408 TGGATTCGGTTTAAATTTGGATTGGAGGATTTGTAACCAACTTTTATGTAAGAAATCATT 2467
||||||||||| |||||||||||||||||||| | ||||| |||||||| ||| ||||||
Sbjct 2318 TGGATTCGGTTAAAATTTGGATTGGAGGATTTTTTACCAATTTTTATGTTAGATATCATT 2377
Query 2468 TGAAAGTAA 2476
|||||||||
Sbjct 2378 TGAAAGTAA 2386
> Ahg323241 jgi|Araly1|323241|fgenesh1_pm.C_scaffold_5000785
Length=1221
Score = 575 bits (311), Expect = 6e-163
Identities = 505/596 (85%), Gaps = 23/596 (4%)
Strand=Plus/Plus
Query 210 AAATGTGGCTGAGGATAAA-AATGTTTCGAGTAAAGTGATTCGAAAGAAGGTGAACAACA 268
||| ||||||||||| ||| |||||||||||||||| ||||| |||||| ||||| ||||
Sbjct 15 AAAGGTGGCTGAGGA-AAAGAATGTTTCGAGTAAAGGGATTCAAAAGAAAGTGAAGAACA 73
Query 269 CTGTGTCAATAGCACTC-AAGAGATATAAGATTGATAGTTATATCTTACTGGATCTTGAT 327
|| |||| |||||| || || |||||||| |||||||||||| ||||||| || ||||||
Sbjct 74 CTATGTCCATAGCA-TCTAAAAGATATAACATTGATAGTTATGTCTTACTAGACCTTGAT 132
Query 328 AAGGTATTAAATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACAATACTAGG 387
|| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 133 AATGTATTAGATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACGATACTAGG 192
Query 388 AAGGAATTGGTCAAAAACCTTAATACTATGGCTTTAGATATTTATGGTAAGTCTGAAGAG 447
||||||||||| |||||||| ||| |||||||| ||||||||| | | | |||||
Sbjct 193 AAGGAATTGGTGAAAAACCTCAATGCTATGGCTATAGATATTT-T--T--G----AAGAG 243
Query 448 AGCAGCCCGGTCCTTGAGGCGTATGGGTCTTTTGTGATGGATATGTATTCATCTCAGAGT 507
||||| |||||||||||||| ||||||||||| |||||||||| || ||| | || ||
Sbjct 244 AGCAGACCGGTCCTTGAGGCATATGGGTCTTTCGTGATGGATACGTTTTCCCCGCAAAGG 303
Query 508 GATTTAGATGTGTCTATTAACTTTGGTAATGGAACATCTGAGA-TTCCTCGTGAAAAGAA 566
||||| ||||| |||||||||||||||| |||||||||||| | || |||||| ||||||
Sbjct 304 GATTTGGATGTATCTATTAACTTTGGTAGTGGAACATCTGA-ACTTTCTCGTGTAAAGAA 362
Query 567 GCTCGAGATACTTAAAAGATTTGCTAA-GAAGCTCCGTTCTCTGCAGGGAG-AAGGGCAG 624
|||||| || ||| |||||||||| || ||||||||| ||| || |||| | ||| |
Sbjct 363 GCTCGAAATTCTTGAAAGATTTGC-AACGAAGCTCCGCTCTTTGGAGGG-GCAAGTGTTT 420
Query 625 GTTAAGAATGTTGAATCTATCTTCTCTGCTAAAGTGCCAATTGTCAAATTCTCTGATCAA 684
|||| |||||||| | |||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 421 GTTAGGAATGTTGTACCTATCTTCAATGCTAGGGTGCCAATTGTCAAATTCTGTGATCAA 480
Query 685 GGGACTGGTGTTGAGTGTGATTTGTCAGTCGAAAATAAAGATGGCATTTTAAATTCACA- 743
|||||||| |||| ||||||||| | ||||||| ||||| ||||||||| ||| ||
Sbjct 481 AGGACTGGTATTGAATGTGATTTGGCTGTCGAAAGCAAAGACGGCATTTTAGTTTC-CAA 539
Query 744 GATCGTTCGCATCATATCTCAAATTGATGGCAGGTTTCAAAAACTTTGTCT-GTTG 798
|||| |||| || |||||||||||||||| |||||||| |||||||| || ||||
Sbjct 540 GATCATTCGTATTATATCTCAAATTGATGATAGGTTTCAGAAACTTTG-CTTGTTG 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93778183190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5