BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45760.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484955 jgi|Araly1|484955|fgenesh2_kg.5__947__AT3G45750.1 931 0.0
Ahg323241 jgi|Araly1|323241|fgenesh1_pm.C_scaffold_5000785 845 0.0
> Ahg484955 jgi|Araly1|484955|fgenesh2_kg.5__947__AT3G45750.1
Length=2386
Score = 931 bits (504), Expect = 0.0
Identities = 728/837 (87%), Gaps = 12/837 (1%)
Strand=Plus/Plus
Query 22 GCTGGGGAAAAGAATGTTTCGAGTAAAGGGATTCAAAAGAAAGTGAAGAACACTATGTCC 81
|||| ||| ||||||||||||||||||| ||||| |||||| || || |||||| ||||
Sbjct 129 GCTGAGGATAAGAATGTTTCGAGTAAAGCGATTCGAAAGAAGGTTAACAACACTGTGTCA 188
Query 82 ATAGCATCT-AAGAGATATAACATTGATAGTTATATCTTACTAGACCTTGATAAGGTATT 140
||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 189 ATAGCAT-TAAAGAGATATAAGATTGATAGTTATATCTTACTGGACCTTGATAAGGTATT 247
Query 141 AGATGATGCCTACAGCTCTTTTCGACCGGTTTCTGCTGATTACAATACTAGGAAGGAATT 200
| |||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 248 AAATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACGATACTAGGAAGGAATT 307
Query 201 GGTCAAAAACCTCAATGCTATGGCTATAGATATTTTTGGTAAATCAGAAGAGAGCAGCCC 260
||| |||||||| |||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 308 GGTGAAAAACCTTAATGCTATGGCTATAGATATTTATGGTAATTCGGAAGAGAGCAGCCC 367
Query 261 GGTCCTTGAGGCGTATGGCTCTTTTGCGATGAATACGTTTTCCTCACAAAAG-GATTTGG 319
|||||||||||||||||| ||||| | |||| ||| || |||||| || | | |||||||
Sbjct 368 GGTCCTTGAGGCGTATGGGTCTTTCGTGATGGATATGTATTCCTCTCAGA-GTGATTTGG 426
Query 320 ATGTATCTATTAACTTTAGTAGCGGAACATCTGAATTTTATCGTGAAAAGAAGCTAGAAA 379
| || ||||||||||| ||| |||||||||||| || ||||||||||||||| || |
Sbjct 427 ACGTGTCTATTAACTTCGGTAATGGAACATCTGAACTTCCTCGTGAAAAGAAGCTCGAGA 486
Query 380 TTCTTACAAGATTTGCAACGAAGCTCCGCTCTTTGGAGGG-GCAAGGGTTTGTCAGGAAT 438
| |||| ||||||||||| ||||||||| || || |||| | ||||| ||| | ||||
Sbjct 487 TACTTAAAAGATTTGCAAAGAAGCTCCGGGCTCTGCAGGGAG-AAGGGCATGTTAAGAAT 545
Query 439 GTTGTACCTATCTTAAGTGCTAGGGTTCCAATTGTCAGATTCTGTGATCAAGGGACTGGT 498
|||| | ||||||| ||||| ||| |||||| ||| ||||| ||||||||||||||||
Sbjct 546 GTTGAATCTATCTTCTCTGCTAAGGTGCCAATTATCAAATTCTCTGATCAAGGGACTGGT 605
Query 499 ATCGAATGTGATTTGACAGTTGAAAGCAAAGACGGCATTTTAACTTCACAGATCATTCGG 558
| |||||||||||| |||| |||| |||||||||||||||| |||||||||| ||||
Sbjct 606 GTTGAATGTGATTTGTCAGTCGAAAATAAAGACGGCATTTTAAATTCACAGATCGTTCGC 665
Query 559 ATTATATCTCAAATTGATGATAGGTTTCAGAAACTTTGTTTGTTGATTAAGCATTGGGCC 618
|| |||||||||||||||| |||||||| ||||||||| | ||| ||||||||||||||
Sbjct 666 ATCATATCTCAAATTGATGGCAGGTTTCAAAAACTTTGTATATTGGTTAAGCATTGGGCC 725
Query 619 AGAGCACATGGGGTTAACAATGCG-TCACACA-ATACCCTGAATTC-GATATCTATAACA 675
| ||| |||| ||||||| |||| | |||| | ||||||||||| | |||||||||||
Sbjct 726 AAAGCTCATGAAGTTAACAGTGCGCT-ACACCGA-ACCCTGAATTCTG-TATCTATAACA 782
Query 676 ATGCTAGTCGCTCATCATTTACAGACTCAAAGTCCTCCAATTTTACCTCCATTCTCTACA 735
|||||||||||| ||| ||||||||||||| |||||| |||||||||||||||||||
Sbjct 783 TTGCTAGTCGCTCTTCACTTACAGACTCAAAATCCTCCCATTTTACCTCCATTCTCTATG 842
Query 736 CTATTTAAAGATGGAATCGATCCTCCTATCGTGGAGAAAAGAACACAAAAGTTCTTAAAC 795
||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct 843 CTATTTAAAGATGGAATTGATCCTCCTAACGTGGAGAAAAGGGCACAAAAGTTCTTAAAC 902
Query 796 TGGGGACAACGTAATCAAGAATCTCTTGGTAGACTGTTTGCAACtttttttATTAAG 852
|||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 903 TGGGGACAGCGTAATCAGGAATCTCTGGGTAGACTGTTTGCAACCTTTTTTATTAAG 959
Score = 132 bits (71), Expect = 8e-30
Identities = 163/205 (80%), Gaps = 15/205 (7%)
Strand=Plus/Plus
Query 853 GTTGAGGATTTTAC-AGACGTGGCT-AGAAATTTTGCAA---GGGTTTTTAGTGACTACG 907
|||||||||||||| | ||||| || | |||| | |||| ||||| | ||| | | |
Sbjct 1065 GTTGAGGATTTTACTA-ACGTGACTCA-AAATGTCGCAAGGCGGGTTAATGGTG-C-A-G 1119
Query 908 GAGCCGAAAAGATATACAGCTCCATAAACAGAACAGTAGATGATATATTGGAGTTCCTCA 967
||||| |||||||||||||||||||||||||||| || || || || || || |||||||
Sbjct 1120 GAGCCAAAAAGATATACAGCTCCATAAACAGAACCGTCGAAGACATCTTTGAATTCCTCA 1179
Query 968 ATGGCAAGGTTGCTGGAGA-ACATCTCACACAAAAGTTGTTTAGCCAACAAACTGTTGTG 1026
||| ||||||||||||| | | |||||| ||| | ||||||| || || | ||||||||
Sbjct 1180 ATGACAAGGTTGCTGGA-ACAGATCTCAGACATAGGTTGTTTGGCAAAGGAGCTGTTGTG 1238
Query 1027 GAGCCTATTCCTCCTGTGTCGCCAC 1051
|| |||||||||| | ||||||
Sbjct 1239 CAG---ATTCCTCCTGGGGCGCCAC 1260
> Ahg323241 jgi|Araly1|323241|fgenesh1_pm.C_scaffold_5000785
Length=1221
Score = 845 bits (457), Expect = 0.0
Identities = 577/633 (91%), Gaps = 15/633 (2%)
Strand=Plus/Plus
Query 699 GACTCAAAGTCCTCCAATTTTACCTCCATTCTCTACACTATTTAAAGATGGAATCGATCC 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 594 GACTCAAAGTCCTCCAATTTTACCTCCATTCTCTACACTATTTAAAGATGGAATCGACCC 653
Query 759 TCCTATCGTGGAGAAAAGAACACAAAAGTTCTTAAACTGGGGACAACGTAATCAAGAATC 818
||||| ||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||
Sbjct 654 TCCTAACGTTGAGAAAAGAACGCAAAATTTCTTAAATTGGGGACAGTGTAATCAAGAATC 713
Query 819 TCTTGGTAGACTGTTTGCAACtttttttATTAAGGTTGAGGATTTTACAGACGTGGCTAG 878
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 714 TCTTGGTAAACTGTTTGCAACTTTTTTTATTAAGGTTGAGGATTTTACAGACGTGTCTA- 772
Query 879 AAATTTT-GCAAGGGTTTTTAGTGACTACGGAGCCGAAAAGATATACAGCTCCATAAACA 937
||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 773 AAATTTTTGCAAGGGTGGTTAGTGACAAAGGAGCCGAAAAGATATACAGCTCCATAAACA 832
Query 938 GAACAGTAGATGATATATTGGAGTTCCTCAATGGCAAGGTT-GCTGGAGAACATCTCACA 996
||| |||||||| || || || ||||||||||||||| || ||||||||||||||||||
Sbjct 833 AAACCGTAGATGACATCTTTGAATTCCTCAATGGCAAG-TTCGCTGGAGAACATCTCACA 891
Query 997 CAAAAGTTGTTTAGCCAACAAACTGTTGTGGAGCCTAT-TCCTCCTGTGTCGCCACAACA 1055
||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 892 CAAAAGTTGTTTAGCCAACAAGCTGTTGTGGAGCCT-TCTCCTCCTGTGTCGCCACAACA 950
Query 1056 ACCTCATAAGAAAAGAGTCTGCTTGGAAAAGGGATACAGAGCTGTAGGAGGGATCAGTCA 1115
||||||||| |||||||||||||||||||| ||||||| ||||||| |||| | | || |
Sbjct 951 ACCTCATAACAAAAGAGTCTGCTTGGAAAACGGATACAAAGCTGTAAGAGGAACCGGTAA 1010
Query 1116 CGGAAGAGAGGAGACTCAT--GAAACTTCTAGAGGAAAACGAAAAAGGTCTGGTGGAA-A 1172
||| |||||||||| | || |||| | |||||||||||||||| | || || ||||| |
Sbjct 1011 CGGGAGAGAGGAGA-T-ATTCGAAAATCCTAGAGGAAAACGAAAGACGTATGCTGGAAGA 1068
Query 1173 --CTGGG-GCTGTAGGTTTAGTGGTGGTGAAGAACCAATGCCTGTGGGTCTGTGGAATGA 1229
| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1069 AAC-GGGAGCTGTAGGTTTAGTGGTGGTGAAGAACCAATGCCTGTGGGTCTGTGGCATGA 1127
Query 1230 GTACAGTCGAAGTCTTGATATGCCAACACCACCACCACATTATGATAAACTTCTTTATAA 1289
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1128 CTACAGTCGAAGTCTTGATATGCCAACACCACCACCACATTATGATAGACTTCTTTATAA 1187
Query 1290 GAAAGTTCCTCTCAAGACTGTTGAACTCATGTG 1322
|||||||||||||||||||||||| | ||||||
Sbjct 1188 GAAAGTTCCTCTCAAGACTGTTGATCACATGTG 1220
Score = 785 bits (425), Expect = 0.0
Identities = 535/586 (91%), Gaps = 15/586 (3%)
Strand=Plus/Plus
Query 22 GCTGGGGAAAAGAATGTTTCGAGTAAAGGGATTCAAAAGAAAGTGAAGAACACTATGTCC 81
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 GCTGAGGAAAAGAATGTTTCGAGTAAAGGGATTCAAAAGAAAGTGAAGAACACTATGTCC 81
Query 82 ATAGCATCTAAGAGATATAACATTGATAGTTATATCTTACTAGACCTTGATAAGGTATTA 141
||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 82 ATAGCATCTAAAAGATATAACATTGATAGTTATGTCTTACTAGACCTTGATAATGTATTA 141
Query 142 GATGATGCCTACAGCTCTTTTCGACCGGTTTCTGCTGATTACAATACTAGGAAGGAATTG 201
||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 142 GATGATGTCTACTGCTCTTTTCGACCGGTTTCTGCTGATTACGATACTAGGAAGGAATTG 201
Query 202 GTCAAAAACCTCAATGCTATGGCTATAGATATTTTTGGTAAATCAGAAGAGAGCAGCCCG 261
|| |||||||||||||||||||||||||||| ||| | | ||||||||||| |||
Sbjct 202 GTGAAAAACCTCAATGCTATGGCTATAGATA--TTT--T---T--GAAGAGAGCAGACCG 252
Query 262 GTCCTTGAGGCGTATGGCTCTTTTGCGATGAATACGTTTTCCTCACAAAAGGATTTGGAT 321
||||||||||| ||||| ||||| | |||| ||||||||||| | |||| ||||||||||
Sbjct 253 GTCCTTGAGGCATATGGGTCTTTCGTGATGGATACGTTTTCCCCGCAAAGGGATTTGGAT 312
Query 322 GTATCTATTAACTTTAGTAGCGGAACATCTGAATTTTATCGTGAAAAGAAGCTAGAAATT 381
||||||||||||||| |||| |||||||||||| ||| ||||| ||||||||| ||||||
Sbjct 313 GTATCTATTAACTTTGGTAGTGGAACATCTGAACTTTCTCGTGTAAAGAAGCTCGAAATT 372
Query 382 CTT-ACAAGATTTGCAACGAAGCTCCGCTCTTTGGAGGGGCAAGGGTTTGTCAGGAATGT 440
||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 373 CTTGA-AAGATTTGCAACGAAGCTCCGCTCTTTGGAGGGGCAAGTGTTTGTTAGGAATGT 431
Query 441 TGTACCTATCTT-AAGTGCTAGGGTTCCAATTGTCAGATTCTGTGATCAAGGGACTGGTA 499
|||||||||||| || ||||||||| |||||||||| ||||||||||||| |||||||||
Sbjct 432 TGTACCTATCTTCAA-TGCTAGGGTGCCAATTGTCAAATTCTGTGATCAAAGGACTGGTA 490
Query 500 TCGAATGTGATTTGACAGTTGAAAGCAAAGACGGCATTTTAACTTCACA-GATCATTCGG 558
| |||||||||||| | || ||||||||||||||||||||| ||| || |||||||||
Sbjct 491 TTGAATGTGATTTGGCTGTCGAAAGCAAAGACGGCATTTTAGTTTC-CAAGATCATTCGT 549
Query 559 ATTATATCTCAAATTGATGATAGGTTTCAGAAACTTTGTTTGTTGA 604
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 550 ATTATATCTCAAATTGATGATAGGTTTCAGAAACTTTGCTTGTTGA 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5