BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45770.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484959 jgi|Araly1|484959|fgenesh2_kg.5__951__AT3G45770.1 2093 0.0
> Ahg484959 jgi|Araly1|484959|fgenesh2_kg.5__951__AT3G45770.1
Length=1372
Score = 2093 bits (1133), Expect = 0.0
Identities = 1305/1386 (94%), Gaps = 20/1386 (1%)
Strand=Plus/Plus
Query 21 AAAAAACCAAAACGACGTCGTTTCTTATATCGTTGCCAGAGAGAGTTTGACGGCGGAGAG 80
||||| ||||||||||||| |||||||||||| || |||||| || |||||||||||||
Sbjct 1 AAAAACCCAAAACGACGTCATTTCTTATATCGCTGTGAGAGAGTGTGTGACGGCGGAGAG 60
Query 81 ATATGGCGGCGTTGATGGAGTCAGTCGTCGGCCGAGCTCTAAAATTCTCATCGACGGCGA 140
||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 61 ATATGGCGGCGCTGATGAAGTCAGTCGCCGGCCGAGCTTTAAAATTCTCATCGACGGCGA 120
Query 141 ATTTCAGGTCAATCCGACGCGGCGAAACACCAACACTCTGTATCAAATCATTCTCCACC- 199
|||||||||||| |||| || | |||||||| ||||||||||||||||||||||||||
Sbjct 121 ATTTCAGGTCAAAACGACACGTCAAAACACCAGCACTCTGTATCAAATCATTCTCCACCG 180
Query 200 --ATTATGTCACCACCGTCAAAAGCCATCGTCTACGAAGAACACGGCTCTCCCGATTCCG 257
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTATTATGTCACCACCGTCGAAAGCCATCGTCTACGAAGAACACGGCTCTCCCGATTCCG 240
Query 258 TCACCAGATTGGTGAATCTCCCGCCGGTGGAAGTGAAAGAAAACGACGTTTGTGTTAAAA 317
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCACAAGATTGGTGAATCTCCCGCCGGTGGAAGTGAAAGAAAACGACGTTTGTGTTAAAA 300
Query 318 TGATCGCCGCTCCGATCAACCCCTCCGATATCAATCGAATTGAAGGTGTGTATCCGGTGA 377
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 TGATCGCCGCTCCGATCAATCCCTCCGATATCAATAGAATTGAAGGTGTGTATCCGGTGA 360
Query 378 GGCCACCGGTACCAGCGGTTGGTGGTTATGAAGGTGTTGGTGAAGTTTATGCAGTTGGCT 437
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 GGCCACCGGTACCAGCGGTTGGTGGTTATGAAGGTGTTGGAGAAGTTTATGCAGTTGGCT 420
Query 438 CCAATGTTAATGGTTTTTCTCCTGGTGATTGGGTCATTCCATCTCCACCTTCTTCAGGGA 497
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 CCAAGGTTAATGGTTTTTCTCCTGGTGATTGGGTTATTCCATCTCCACCTTCTTCAGGGA 480
Query 498 CTTGGCAGACTTATGTTGTGAAGGAAGAGAGTGTGTGGCACAAAATCGATAAAGAGTGTC 557
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 CTTGGCAGACGTATGTTGTGAAGGAAGAGAGTGTGTGGCACAAAATCGATAAAGCGTGTC 540
Query 558 CAATGGAGTATGCAGCGACGATTACTGTTAATCCATTGACGGCTTTGAGGATGCTTGAGG 617
||||||||||||| |||||||||||||||||||| ||||||||| | ||||||||||| |
Sbjct 541 CAATGGAGTATGCTGCGACGATTACTGTTAATCCTTTGACGGCTCTAAGGATGCTTGAAG 600
Query 618 ACTTTGTGAACTTGAATTCTGGGGATTCTGTTGTACAGAATGGTGCAACAAGTATTGTGG 677
|||||||| ||| |||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 601 ACTTTGTGGTCTTAAATTCTGGAGATTCCGTGGTACAGAATGGTGCAACAAGTATTGTGG 660
Query 678 GTCAGTGTGTCATTCAGTTGGCAAGACTCCGTGGCATCAGTACCATCAACCTTATTCGTG 737
|||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct 661 GTCAGTGTGTCATTCAGTTGGCTAGACTCCGTGGCATTAGTACTATCAATCTTATTCGTG 720
Query 738 ACAGGGCTGGGTCGGATGAAGCAAGAGAGCAGCTGAAAGCTCTAGGTGCAGATGAAGTCT 797
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 ACAGGGCTGGGTCGGATGAAGCAAGAGAGCAGCTGAAAGCTCTAGGTGCAGATGAAGTGT 780
Query 798 TTTCAGAGAGTCAACTGAATGTAAAGAATGTGAAAAGTCTTTTGGGTAACTTACCTGAAC 857
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTTTAGAGAGTCAACTGAATGTAAAGAATGTGAAAAGTCTTTTGGGTAACTTACCTGAAC 840
Query 858 CAGCTCTGGGATTCAACTGTGTTGGTGGCAATGCTGCCTCTCTTGTCCTCAAATATCTCA 917
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 841 CAGCTCTGGGATTCAACTGTGTTGGTGGCAATGCTGCCTCTCTTGTGCTCAAATATCTCA 900
Query 918 GGGAAGGAGGAACCATGGTAACATATGGTGGGATGTCTAAGAAGCCAATCACTGTGTCAA 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGGAAGGAGGAACCATGGTAACATATGGTGGGATGTCTAAGAAGCCAATCACTGTGTCAA 960
Query 978 CAACATCTTTCATCTTTAAGGATTTGGCCTTAAGAGGATTTTGGCTGCAGAGTTGGTTGA 1037
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 961 CAACATCTTTCATCTTTAAGGATTTGGCCTTGAGAGGATTCTGGCTTCAGAGTTGGTTGA 1020
Query 1038 GTATGGGTAAAGTAAAAGAATGCAGAGAGATGATAGACTATCTCCTCGGGCTTGCACGAG 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTATGGGTAAAGTAAAAGAATGCAGAGAGATGATAGACTATCTCCTCGGGCTTGCACGAG 1080
Query 1098 ACGGGAAGCTAAAATACGAAACGGAATTGGTTCCCTTCGAAGAGTTCCCTGTTGCTCTCG 1157
|||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1081 ACGGAAAGCTAAAATATGAAACGGAATTGGTTCCCTTCGACGAGTTCCCTGTTGCTCTCG 1140
Query 1158 ATAAAGCTCTCGGGAAGCTAGGAAGGCAACCTAAACAAGTCATCACATTCTGAAGCTTCC 1217
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1141 ATAAAGCTCTCGGGAAGCTAGGTAGGCAACCTAAACAAGTCATCACATTCTAAAGCTTCC 1200
Query 1218 TTTG-TGTGAGCCATTTAGTAACTGTTGCCACTATCTTTAGTGTTAGCTATTAATATGAC 1276
|| | | |||||||||||||||||||| ||||| | || ||||||||||||
Sbjct 1201 TTCGCT-TGAGCCATTTAGTAACTGTTACCACT-T----AG------CTATTAATATGAT 1248
Query 1277 AAGGCATGATGTACTTTATTATATAG-TATCTGCTTCTTCTTGTCCAATGTATCAG-Gaa 1334
|| ||||||||||||||||||| | | ||||||||||||||||| ||||||||||| |||
Sbjct 1249 AATGCATGATGTACTTTATTAT-TCGGTATCTGCTTCTTCTTGTACAATGTATCAGAGAA 1307
Query 1335 aaaaaTGAGAATGTAGACTGAATAAAAACCAAAATAAATCATTATGCTCATGTTCAGATT 1394
|| |||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 1308 AACAATGAGAATGTAGACTGAATAAAA-CCAAAATAAATTATTATGCTCAAGTTCAGATT 1366
Query 1395 GTAACT 1400
||||||
Sbjct 1367 GTAACT 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5