BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45800.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327206 jgi|Araly1|327206|fgenesh1_pm.C_scaffold_6002426 664 0.0
Ahg924268 jgi|Araly1|924268|scaffold_105549.1 152 8e-36
> Ahg327206 jgi|Araly1|327206|fgenesh1_pm.C_scaffold_6002426
Length=1119
Score = 664 bits (359), Expect = 0.0
Identities = 653/787 (83%), Gaps = 52/787 (7%)
Strand=Plus/Plus
Query 313 CCATCTCGTCACAAT-TATCTCTGCAGCAT-CAGTCATAATGTTTCTGAGACCATAGAC- 369
||||||||||||||| | |||||||||| | ||||||| ||||||| ||| |||||||
Sbjct 10 CCATCTCGTCACAATCT-TCTCTGCAGC-TGCAGTCATGATGTTTCACAGATCATAGACT 67
Query 370 AAAGTTAAGAACTTAATCGAGACATGTATTTACAAGTACATGAGTTTGGAAGAAACAGTG 429
| | |||||| ||||||||||||||||| | ||||||||||||||||| ||||| ||
Sbjct 68 TTA-TAAAGAACATAATCGAGACATGTATTCAAAAGTACATGAGTTTGGAGGAAACGGTA 126
Query 430 ACATATCTGGAGGACAATCACAATATTAGTCACCATCTCACCATAA-CAATATGGGAGCA 488
|||||| |||||||||||||||| ||||||||||||||||||| || |||||||||||||
Sbjct 127 ACATATATGGAGGACAATCACAAGATTAGTCACCATCTCACCA-AACCAATATGGGAGCA 185
Query 489 GCTTCAGAAAGAGAGTCCAGAGTTTTTCAAGAAGTACTACTT----C-C-----A---CT 535
|||||||||||||||||||||||||||||| |||||| |||| | | | ||
Sbjct 186 GCTTCAGAAAGAGAGTCCAGAGTTTTTCAACAAGTACCACTTAAAACGCGAATTAGCGCT 245
Query 536 TTAGTCTGATGGTCGAGAATGGAGATCTTGATATTGGTACTGCA-C-----CATTCAAGA 589
|| ||||||||||||| |||||| ||||||||| ||||||| | || ||||||
Sbjct 246 TT-CTCTGATGGTCGAGCATGGAGCTCTTGATATCAATACTGCATCATATACACTCAAGA 304
Query 590 A-TTTTCTCGGTCAAGATCCTGAAGGAGCTCATCTCTTGGTGAAACTAGCGAATACACCT 648
| |||| || |||||||||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 305 ATTTTTTTC-GTCAAGATCCTGAAGGAGCTCATCTCTTGGAGAAACTAGCTAATACTCCT 363
Query 649 TCTGATAGGTCAGAGATGAGTCCTTCAAGCTTGGCAACGTTGGCATTGGATGATACACCT 708
||||||| ||||||| |||||| |||||||||||||| ||||| ||| ||||||||| |
Sbjct 364 TCTGATATGTCAGAGGTGAGTCTTTCAAGCTTGGCAATGTTGGTATTAGATGATACAAAT 423
Query 709 GGTCTAACAGTAAACAAGTTGCAGATTCCTAATGATCATCAAAATCAATTTCATTC-TTA 767
|||| |||||||||| ||| |||||||||||||||||| ||| |||| ||||| | |||
Sbjct 424 GGTCCAACAGTAAACCAGTGGCAGATTCCTAATGATCAGCAACATCAGTTTCAG-CATTA 482
Query 768 TCAATGGTCTACTACAACTAATCATATACCTTTAAACCAATTGCCGATTCCAAATGGTCA 827
||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||
Sbjct 483 TCAATGGTCTACTACAACTGTTCATCTACCTTTAAACCGGTTGCCGATTCCTGATGGTCA 542
Query 828 ACAAAATCATCTTCATCAAAACCAATGGTCTACACCAAATCATCAAGCTTGTAC---TCT 884
||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |||
Sbjct 543 ACAAAATCATCTTCATCAAAATCAATGGTCTACACCAAATAATCATGCTTGTACCAATCT 602
Query 885 TGGAGCTCCTACCGTTCAACCAGCAGCTAATGATCAAA-----CCTTTT--TC-TCCATA 936
|||||||||||| |||| ||| ||||||||||||||| |||| | | ||| |
Sbjct 603 TGGAGCTCCTACTGTTCCACCGGCAGCTAATGATCAATGGTTTCCTTATAGTGATCC-TG 661
Query 937 -G-GTACCAATCTGGGAGCTCCTACCGTTCCACCAGGAGCTAATGATCA-CTGGTTTCCT 993
| |||||||||| ||||||||||||| | |||||| |||||||||||| | |||| |
Sbjct 662 CGTGTACCAATCTTGGAGCTCCTACCGATGCACCAGCAGCTAATGATCAAC-GGTTGACA 720
Query 994 TATAGTGATCCTGCGTGT-ACCAATCTTGGAGCTCCTGCCGTTCCACCAGAAGCTAATAG 1052
|| ||||||||| | | || | || || | | | |||||| |||||| ||||| | |
Sbjct 721 GATTTTGATCCTGCATATTACGA-TCCTGTATATTCAGCCGTTGCACCAGTAGCTACT-G 778
Query 1053 -TCAATG 1058
||||||
Sbjct 779 CTCAATG 785
Score = 409 bits (221), Expect = 4e-113
Identities = 351/411 (85%), Gaps = 19/411 (5%)
Strand=Plus/Plus
Query 938 GTACCAATCTGGGAGCTCCTACCGTTCCACCAGG-AGCTAATGATCACTGGTTTCCTTAT 996
|||||||||| ||||||||||| |||||||| || |||||||||||| ||||||||||||
Sbjct 593 GTACCAATCTTGGAGCTCCTACTGTTCCACC-GGCAGCTAATGATCAATGGTTTCCTTAT 651
Query 997 AGTGATCCTGCGTGTACCAATCTTGGAGCTCCTGCCGTTCCACCAGAAGCTAAT-AGTCA 1055
||||||||||||||||||||||||||||||||| ||| | |||||| ||||||| | |||
Sbjct 652 AGTGATCCTGCGTGTACCAATCTTGGAGCTCCTACCGATGCACCAGCAGCTAATGA-TCA 710
Query 1056 ATGGTTGCCATATACTGATCATGCGTATAACTATCCTGTTGTATATTCAACCGGTGCACC 1115
| ||||| || || ||||| ||| ||| || ||||||| ||||||| ||| ||||||
Sbjct 711 ACGGTTGACAGATTTTGATCCTGCATATTACGATCCTGT---ATATTCAGCCGTTGCACC 767
Query 1116 AGCAGCCACTGCTCAATGGCCAACATCTAATGATTTCCTTCCCATAGATACTGGAGCTCC 1175
|| ||| ||||||||||| ||||||||||||||| | || | || |||| ||||||
Sbjct 768 AGTAGCTACTGCTCAATGCCCAACATCTAATGAT--C-TTGCT-TA--TACTAGAGCTCT 821
Query 1176 AACTTTTGCAAAAGTACCTACTGCGGCATTTGACCATTTTGCAAATG-GTTTTGGAGAAG 1234
|||| ||||||||| ||||||||||||||||||||||||| || ||| |||| ||||| |
Sbjct 822 AACTGTTGCAAAAGCACCTACTGCGGCATTTGACCATTTTACAGATGAGTTT-GGAGACG 880
Query 1235 ATATT-AACAATAGCAG-CCCAAATTTCCAGCCGATGGATCCTTCAACAGCAAAACTACT 1292
||||| || |||||| | |||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 881 ATATTGAA-AATAGC-GTCCCAAATTTCCAGCAGATGGATCCTTCAACAGCAGAACAACT 938
Query 1293 AACACAACTCGACCACCTGCAACAAGACCCATATGGACAATACCAACTGCC 1343
|| |||||||| ||||||| | | |||| ||||||||||||| |||||||
Sbjct 939 GACGCAACTCGAGCACCTGCTAGATGACCAATATGGACAATACGAACTGCC 989
> Ahg924268 jgi|Araly1|924268|scaffold_105549.1
Length=584
Score = 152 bits (82), Expect = 8e-36
Identities = 133/155 (86%), Gaps = 14/155 (9%)
Strand=Plus/Plus
Query 540 TCTGATGGTCGAGAATGGAGATCTTGATAT-TGGTACTGCACCA--T----TCAAGAATT 592
|||||| |||||| |||||| ||||||||| || ||||||| | |||||||||
Sbjct 287 TCTGATAGTCGAGCATGGAGCTCTTGATATCAATTA-TGCACCATCTACACTCAAGAATT 345
Query 593 TTC-TCGGTCAAGATCCTGAAGGAGCTCATCTCTTGGTGAAACTAGCGAATACACCTTCT 651
||| || |||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 346 TTCTTC-GTCAAGATCCTGAAGGAGCTCATCTCTTGGAGAAACTAGCTAATACACCTTC- 403
Query 652 GA-TAGGTCAGA-GATGAGTCCTTCAAGCTTGGCA 684
|| ||||||||| | ||||||||||||||||||||
Sbjct 404 GAATAGGTCAGACG-TGAGTCCTTCAAGCTTGGCA 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5