BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45810.1
Length=2739
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897391 jgi|Araly1|897391|Al_scaffold_0005_1357 4272 0.0
Ahg917747 jgi|Araly1|917747|Al_scaffold_0008_2498 1592 0.0
> Ahg897391 jgi|Araly1|897391|Al_scaffold_0005_1357
Length=2739
Score = 4272 bits (2313), Expect = 0.0
Identities = 2605/2747 (95%), Gaps = 16/2747 (1%)
Strand=Plus/Plus
Query 1 ATGAAAAACAACAAAAAGGTTGGGACCGAAGATTCAACGAAATGGATGCTAGAGAGCGTC 60
||||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGAACAACAATAGAAAGGTTGGGACCGAAGATTCAACGAAATGGATGTTAGAGAGCGTC 60
Query 61 GAGATAGATCCAAAAGGCGATAGTTCTGTGAAACAACCCGAAAGCACAATCAATAGCAAT 120
|||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||
Sbjct 61 GAGATAGATCCAAAAGGCGAGAGTTCCGTGAAACAATCCGAAAACACAATCAATAGCAAT 120
Query 121 AATCCTGAGAGTAGTGGT-GCTGGTGGTGGGATCTTGAAGAATGTGTCTAAGAATCTCGC 179
||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 121 AATCCCGAGAGTAGTGGTAG-TGGTGGTGGGATCTTGAAGAATGTGTCTAAGAATCTTGG 179
Query 180 CGTGGGATCAATAATCAGGTCCATGAGCGTAAACAAATGGAGAAAGAGCGGTAATCTCGG 239
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 CGTGGGATCGATAATCAGGTCCATGAGTGTAAACAAATGGAGAAAGAGCGGTAATCTCGG 239
Query 240 GTCCCCGAGCACGAGGAAGAGTGGAAACCTGGGGCCTCCACTCCCT-GTGTCCCAAGTAA 298
| |||||||||||||||||||||||||| |||||||||| |||||| || |||||| ||
Sbjct 240 GCCCCCGAGCACGAGGAAGAGTGGAAACTTGGGGCCTCCGCTCCCTATTG-CCCAAGAAA 298
Query 299 AAAGACCGGGGCCACAAAGAGTCGAGAGGACTACATCTAGCGCGGCTAGAGGACTACAAA 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 AAAGACCGGGGCCACAAAGAGTCGAGAGGACTACATCTAGTGCGGCTAGAGGACTACAAA 358
Query 359 GTCTCCGGTTCCTTGATCGGACCGTCACGGGAAGAGAACGAGATTCGTGGAGATCAATCG 418
| || ||||||||||||||||| ||||| ||| | ||||| |||||||||||||||||||
Sbjct 359 GCCTACGGTTCCTTGATCGGACTGTCACAGGACGGGAACGGGATTCGTGGAGATCAATCG 418
Query 419 AAAACCGGTTCAATCAATTTGCTGTTGACGGGAGGCTTCCCAAGGATAAATTCGGCGTTT 478
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 419 AGAACCGGTTCAATCAATTTGCCGTTGACGGGAGGCTTCCCAAGGATAAATTCGGTGTTT 478
Query 479 GCATTGGAATGGGAGATACATTGGAGTTTGCGGCAAAAGTATACGAAGCATTGGGTAGGA 538
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 479 GCATTGGAATGGGAGATACATTGGAGTTTGCGGCAGAAGTATATGAAGCATTGGGTAGGA 538
Query 539 GAAGACAAATAAAAACAGAAAATGGGATTGACAAGGAACAACTCAAGCTTTTTTGGGAAG 598
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 GAAGACAAATAAACACAGAAAATGGGATTGATAAGGAACAACTCAAGCTTTTTTGGGAAG 598
Query 599 ACATGATCAAGAAGGATCTCGACTGTCGCCTCCAAATCTTCTTCGACATGTGTGATAAGG 658
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 599 ACATGATCAAGAAAGATCTCGACTGTCGCCTCCAGATCTTCTTCGACATGTGTGACAAGG 658
Query 659 ACGGAGACGGGAAGTTAACAGAAGAGGAGGTTAAAGAAGTCATAGTCTTAAGTGCATCCG 718
| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |
Sbjct 659 ATGGAGACGGGAAGTTAACAGAAGAGGAAGTTAAAGAGGTCATAGTCTTGAGTGCATCAG 718
Query 719 CGAACAGGCTCG-TGAATCTGAAGAAGAATGCTGCGTCTTATGCTTCTTTGATCATGGAA 777
|||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 719 CGAACAGGCTCGCT-AATCTAAAGAAGAATGCTGCATCTTATGCTTCTTTGATCATGGAA 777
Query 778 GAGCTCGACCCCAATGAGCAGGGTTACATTGAGATGTGGCAACTCGAGGTGCTACTAACA 837
|| ||||||||| | | || |||||||||||||||||||||||||||||| || |||||
Sbjct 778 GAACTCGACCCCGACCAACACGGTTACATTGAGATGTGGCAACTCGAGGTGTTATTAACA 837
Query 838 GGAATTGTATCAAACGCCGACTCACATAAGGTCGTGAGGAAATCGCAACAGCTAACGCGA 897
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 838 GGAATTGTATCAAACGCTGAGTCACATAAGGTGGTGAGGAAATCGCAACAGCTAACGCGA 897
Query 898 GCCATGATCCCAAAACGTTACAGAACACCGACTAGTAAATACGTTGT-AGTGACCGCAGA 956
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||
Sbjct 898 GCCATGATCCCAAAACGTTACAGAACACCGACTAGTAAATACGTT-TCAGTAACCGCCGA 956
Query 957 GCTAATGTACGAGCACTGGAAGAAGATTTGGGTCGTCACATTGTGGCTCGCAGTAAACGT 1016
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 957 GCTAATGTACGAGCACTGGAAAAAGATTTGGGTCGTTACATTGTGGCTCGCAGTAAACGC 1016
Query 1017 CGTCCTCTTCATGTGGAAATACGAAGAGTTCACCACAAGCCCTCTTTACAACATCACTGG 1076
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1017 CGCCCTCTTCATATGGAAATACGAAGAGTTCACCACAAGCCCTCTTTACAACATCACCGG 1076
Query 1077 ACGCTGCCTTTGCGCCGCTAAAGGAACGGCAGAAATACTAAAACTCAACATGGCTTTGAT 1136
|||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 1077 ACGCTGCCTTTGCGCCGCGAAAGGAACTGCGGAAATACTAAAACTCAACATGGCTTTGAT 1136
Query 1137 TTTGGTCCCTGTTTTAAGAAGAACCCTAACGTTCCTCAGATCGACTTTCTTGAACCACTT 1196
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
Sbjct 1137 CTTGGTCCCTGTTTTAAGAAGAACCCTTACGTTCCTCAGATCGACTTTCTTGAGCCACCT 1196
Query 1197 GATCCCATTCGACGATAACATCAACTTCCATAAGTTGATAGCCGTGGCGATAGCAGTTAT 1256
|||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1197 GATCCCGTTCGATGATAACATCAACTTCTATAAGTTGATAGCCGTGGCGATAGCGGTTAT 1256
Query 1257 TTCCTTGCTTCACACGGCATTACACATGCTATGCAACTACCCTAGGCTAAGTTCTTGCCC 1316
||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |||| ||
Sbjct 1257 TTCCTTGCTCCACACGGCACTACACATGCTATGCAACTATCCTAGGCTAAGTGCTTG-CC 1315
Query 1317 CT-ACAATTTCTACTCCGACTATGCGGGGAATCTCTTGGGAG-CCAAGCAACCGACCTAT 1374
|| || |||| |||| || || ||||| ||||||||||| | || |||||||||||||
Sbjct 1316 CTAACGATTTGTACTATGATTACGCGGGAAATCTCTTGGG-GTTCATGCAACCGACCTAT 1374
Query 1375 TTAGGCCTAATGCTGACCCCGGTTTCGGTCACAGGAGTTCTAATGATCATCTTCATGGGT 1434
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TTAGGTCTAATGCTGACCCCGGTTTCGGTCACAGGAGTTCTAATGATCATCTTCATGGGT 1434
Query 1435 ATCTCATTCACCCTTGCTATGCATTACTTCAGAAGAAACATAGTGAAATTGCCTATACCA 1494
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1435 ATCTCATTCACGCTTGCTATGCATTACTTCAGAAGAAACATAGTGAAATTGCCTAAACCG 1494
Query 1495 TTTAACCGTCTTGCTGGATTTAATTCGTTTTGGTATGCTCATCATTTGCTGGTTATTGCC 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TTTAACCGTCTTGCTGGATTTAATTCGTTTTGGTATGCTCATCATTTGCTGGTTATTGCC 1554
Query 1555 TACGCTCTTCTTATCATCCATGGTTACATTCTTATCATCGAGAAACCTTGGTACCAAAAG 1614
|| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1555 TATGCTCTTCTTATCATTCATGGTTACATTCTTATCATCGAGAAGCCTTGGTACCAAAAA 1614
Query 1615 ACGACGTGGATGTACGTGGCCATACCAATGGTGTTGTACGCGAGCGAGAGGCTTTTCTCA 1674
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 ACGACATGGATGTACGTGGCCATACCAATGGTGTTGTACGCGAGCGAGAGGCTTTTCTCA 1674
Query 1675 CGAGTTCAAGAACACAACCATCGTGTCCACATTATCAAA-GCTATTGTATATTCAGGCAA 1733
|||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 1675 AGAGTTCAAGAACACAACCATCGTGTCCATATTAT-AAAGGCTATTGTATATTCAGGCAA 1733
Query 1734 TGTTCTTGCACTCTATATGACCAAACCTCAAGGGTTCAAGTACAAAAGTGGCATGTACAT 1793
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1734 TGTTCTTGCACTCTATATGACAAAACCTCAAGGGTTCAAGTACAAAAGTGGCATGTACAT 1793
Query 1794 GTTTGTCAAGTGCCCTGATATCTCCAAATTCGAATGGCATCCATTCTCCATCACTTCTGC 1853
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1794 GTTTGTCAAGTGTCCTGATATCTCCAAATTCGAATGGCATCCATTCTCCGTCACTTCTGC 1853
Query 1854 ACCCGGAGATGAATATTTGAGCGTTCACATAAGAGCATTAGGAGATTGGACTTCTGAACT 1913
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1854 ACCCGGAGATGAATATTTGAGCGTTCACATAAGAGCATTAGGAGATTGGACCTCTGAACT 1913
Query 1914 TAGGAACAGATTTGCAGAGACATGTGAGCCTCATCAAAAATCGAAACCTAGTCCAAATGA 1973
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1914 TAGGAACAGATTTGCAGAGACATGTGAGCCTCATCAAACATCGAAACCTAGTCCAAAT-A 1972
Query 1974 -TCTTATTAGGATGGAAACAAGAGCGAGAGGTGCAAATCCTCATGTTGAAGAATCCCAAG 2032
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1973 GTCTTATTAGGATGGAAACAAGAGCGAGAGGTGCAAATCCTCACGTTGAAGAATCACAAG 2032
Query 2033 CCTTATTTCCAAGAATATTTATCAAAGGACCATATGGGGCTCCGGCACAAAGCTATCAGA 2092
|||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||
Sbjct 2033 CCTTATTTCCAAGAATTTTTATCAAAGGACCATACGGAGCTCCGGCACAAAACTATCAGA 2092
Query 2093 AGTTTGATATCCTTTTGTTGATTGGGCTAGGGATCGGGGCAACCCCATTTATAAGTATCC 2152
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2093 AGTATGATATCCTTTTGTTGATTGGGCTAGGGATAGGGGCAACCCCATTTATAAGTATCC 2152
Query 2153 TAAAAGATATGTTGAATAATCTCAAACCTGGTATTCCAAAAACCGGGCAAAAGTATGAAG 2212
||||||| |||||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 2153 TAAAAGACATGTTGAACAATCTCAAACCTGGTATTCCAAGAGCCGGGCAAAAGTATGAAG 2212
Query 2213 GAAGTGTAGGAGGTGAGAGCTTAGGAGGATCAAGTGTATATGGAGGATCGAGTGTAAATG 2272
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2213 GAAGTGTAGGAGGTGAGAGCTTAGGAGGATCAAGTGTAAATGGAGGATCGAGTGTAAATG 2272
Query 2273 GAGGAGGTAGTGTAAATGGAGGAGGTAGTGTAAGTGGAGGAGGTAGAAAGTTTCCACAAA 2332
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2273 GAGGATCTAGTGTAAATGGAGGAGGTAGTGTAAGTGGAGGAGGTAGGAAGTTTCCACAAA 2332
Query 2333 GAGCATATTTTTATTGGGTGACAAGAGAACAAGCTTCTTTCGAATGGTTCAAAGGAGTTA 2392
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2333 GAGCATATTTTTACTGGGTGACAAGAGAACAAGCTTCTTTCGAATGGTTCAAAGGAGTTA 2392
Query 2393 TGGATGATATTGCAGTGTATGACAAAACCAATGTGATAGAGATGCATAACTACTTAACAA 2452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2393 TGGATGATATTGCAGTGTATGACAAAACCAATGTGATAGAGATGCATAACTACTTAACAA 2452
Query 2453 GTATGTACGAAGCAGGAGATGCGAGATCTGCTCTAATTGCTATGGTCCAGAAACTTCAAC 2512
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2453 GTATGTACGAAGCAGGAGATGCAAGATCTGCTCTAATTGCTATGGTCCAGAAACTTCAAC 2512
Query 2513 ATGCCAAAAATGGTGTTGACATTGTTTCCGAGAGCCGAATACGAACCCATTTCGCAAGAC 2572
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2513 ATGCCAAAAATGGTGTTGACATTGTGTCCGAGAGCCGAATACGAACCCATTTCGCAAGAC 2572
Query 2573 CTAATTGGAGGAAGGTTTTTTCTGAATTGTCAAACAAGCACGAGACTTCTCGCATAGGTG 2632
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2573 CTAATTGGAGGAAGGTTTTTTCTGAATTGTCAAGCAAGCACGAAACTTCTCGCATAGGTG 2632
Query 2633 TGTTCTACTGTGGAAGTCCAACGCTTGTTCGACCGCTAAAATCACTTTGTCAGGAGTTCA 2692
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2633 TGTTCTACTGTGGAAGTCCAACGCTTGTTCGACCACTAAAATCCCTTTGTCAGGAGTTCA 2692
Query 2693 GTCTCGAGTCGTCCACCCGCTTTACTTTTCACAAAGAGAATTTCTGA 2739
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2693 GTCTCGAGTCGTCCACCCGCTTTACTTTCCACAAAGAGAATTTCTGA 2739
> Ahg917747 jgi|Araly1|917747|Al_scaffold_0008_2498
Length=2661
Score = 1592 bits (862), Expect = 0.0
Identities = 1737/2151 (81%), Gaps = 94/2151 (4%)
Strand=Plus/Plus
Query 156 GAAGAATGTGTCTAAG-AATCTCGCCGTGGGATCAATAATCAGGTCCATGAGCGTAAACA 214
|||||||| ||| ||| ||||||| ||||||||| |||||| | | | ||||| ||
Sbjct 129 GAAGAATGCGTC-AAGAAATCTCGGCGTGGGATCGATAATCCGAACGTTAAGCGT-TTCA 186
Query 215 AA-TGGAGAAAGAGCGGTAATCTCGGGTCCCCGAGCACGAGGAAGAGTGGAAACCTGGGG 273
|| |||||||||||||| ||||| || || |||||||| ||||| ||||| |||||||||
Sbjct 187 AACTGGAGAAAGAGCGGGAATCTAGGCTCTCCGAGCACAAGGAAAAGTGGGAACCTGGGG 246
Query 274 CCTCC-A-C--TCCCTGTGTCCCAAGTAAAAAGACCGGGGCCACAAAGAGTCGAGAGGAC 329
||||| | | | || ||| |||||| |||| | || ||||||||||| ||||||||
Sbjct 247 CCTCCGACCAATGCC-GTG-CCCAAG----AAGA-CAGGTCCACAAAGAGTGGAGAGGAC 299
Query 330 TACATCTAGCGCGGCTAGAGGACTACAAAGTC-TCCGGTTCCTTGATCGGACCGTCACGG 388
||||||||||| ||||| ||||| || || | | ||||||||||||||||| ||||| |
Sbjct 300 AACATCTAGCGCCGCTAGGGGACTTCAGAG-CTTACGGTTCCTTGATCGGACAGTCACCG 358
Query 389 GAAGAGAACGAGATTCGTGGAGATCAATCGAAAACCGGTTCAATCAATTTGCTGTTGACG 448
|| ||||||||||| | ||||| || || || || || || ||||| ||| |||| || |
Sbjct 359 GACGAGAACGAGATGCATGGAGGTCGATTGAGAATCGATTTAATCAGTTTTCTGTCGATG 418
Query 449 GGAGGCTT-CCCAAGGATAAATTCGGCGTTTGCATTGGAATGGGAGATAC-ATTGGAGTT 506
| | || || || || ||||||||||| ||||||||||||||||| || | |||||||
Sbjct 419 GCA-AATTGCCTAAAGAGAAATTCGGCGTCTGCATTGGAATGGGAGACACGA-TGGAGTT 476
Query 507 TGCGGCAAAAGTATACGAAGCATTGGGTAGGAGAAGACAAATAAAAACAGAAAATGGGAT 566
||| ||| |||| || || ||||||||| |||||||||||||| | |||||||| || ||
Sbjct 477 TGCTGCAGAAGTTTATGAGGCATTGGGTCGGAGAAGACAAATAGAGACAGAAAACGGTAT 536
Query 567 TGACAAGGAACAACTCAAGCTTTTTTGGGAAGACATGATCAAGAAGGATCTCGACTGTCG 626
||||| |||||||||||| | ||||||||||||||||||||||| || ||||| |||||
Sbjct 537 CGACAAAGAACAACTCAAGGTGTTTTGGGAAGACATGATCAAGAAAGACCTCGATTGTCG 596
Query 627 CCTCCAAATCTTCTTCGACATGTGTGATAAGGACGGAGACGGGAAGTTAACAGAAGAGGA 686
|| || ||||| |||||||||||||| ||| ||||||| || ||| | |||||||||||
Sbjct 597 TCTTCAGATCTTTTTCGACATGTGTGACAAGAACGGAGATGGTAAGCTCACAGAAGAGGA 656
Query 687 GGTTAAAGAAGTCATAGTCTTAAGTGCATCCGCGAACAGGCTCGTGAATCTGAAGAAGAA 746
|| ||||| ||||||||||| || || ||||||||| | || | |||| |||| |||||
Sbjct 657 AGTGAAAGAGGTCATAGTCTTGAGCGCCTCCGCGAACCGCCTAGGGAATTTGAAAAAGAA 716
Query 747 TGCTGCGTCTTATGCTTCTTTGATCATGGAAGAGCTCGACCCCAATGAGC-AGGGTTACA 805
|||||| |||| || ||||||||||||||||| ||||||||| || | | | || ||||
Sbjct 717 CGCTGCGGCTTACGCGTCTTTGATCATGGAAGAACTCGACCCCGATCA-CAAAGGATACA 775
Query 806 TTGAGATGTGGCAACTCGAGGTGCTACTAACAGGAATTGT-ATCAAACGCCGACTCACAT 864
| ||||||||||| | ||| | ||| |||||||||| || | ||||||| || | |||
Sbjct 776 TAGAGATGTGGCAGTTAGAGATACTATTAACAGGAATGGTGA-CAAACGCTGA-T-ACA- 831
Query 865 AAGGTCG-TGAGGAAATCGC-AACAGCTAACGCGAGCCATGATCCCAAAACGTTACAGAA 922
| | | ||| |||||| | ||| ||| || || || ||||||||| | ||||||||||
Sbjct 832 GA-GAAGATGAAGAAATCTCAAAC-GCTGACACGCGCAATGATCCCAGAGCGTTACAGAA 889
Query 923 CACCGACT-AGTAAATACGTTGT-AGTGACCGCAGAGCTAATGTACGAGCACTGGAAGAA 980
| |||| | || ||||||||| | ||| |||||||| || ||| ||||| | ||||| ||
Sbjct 890 CGCCGA-TGAGCAAATACGTT-TCAGTAACCGCAGAACTGATGCACGAGAATTGGAA-AA 946
Query 981 GATT-TGGGT-CGTCACATTGT-GGCTC-GCAGTAAACG-TCGTCCTCTTCATGTGGAAA 1035
||| ||||| | || | |||| ||| | || | |||| | | || |||||||||||
Sbjct 947 AATTATGGGTAC-TCGCTTTGTGGGC-CATCA-TCAACGTTTAT-CTATTCATGTGGAAG 1002
Query 1036 TACGAAGAGTTCACCACAAGCCCTCTTTACAACATCACTGGACGCTGCCTTTGCGCCGCT 1095
||||||||||| | | || |||||| ||||||||||| ||||||||| ||||||| |||
Sbjct 1003 TACGAAGAGTTTATGAGAAACCCTCTCTACAACATCACCGGACGCTGCGTTTGCGCAGCT 1062
Query 1096 AAAGGAACGGCAGAAATACTAAAACTCAACATGGCTTTGATTTTGGTCCCTGT-TTTAAG 1154
||||| |||| |||| || ||||||||||||||| ||||||||||||| || | | ||
Sbjct 1063 AAAGGTGCGGCCGAAACGCTGAAACTCAACATGGCTCTGATTTTGGTCCCGGTCTGT-AG 1121
Query 1155 AAGAACCCTAACGTTCCTCAGATCGAC-TTTCTTGAACCACT-TGATCCCATTCGACGAT 1212
|| |||||||||| |||| || || || ||| ||||||| | || |||||||||||||
Sbjct 1122 AAAAACCCTAACGATCCTTAGGTCAACGTTT-TTGAACC-GTGTGGTCCCATTCGACGAC 1179
Query 1213 AACATCAACTTCCATAAGTTGATAGCCGT-GGCGATAGCAGTT--ATTTCCTTGCTTCAC 1269
||||| |||||||| ||| |||| | ||| ||| || ||| | || |||||||||
Sbjct 1180 AACATAAACTTCCACAAGGTGATTG-CGTATATGATCGC-GTTCCA-GTCTTTGCTTCAC 1236
Query 1270 ACGGCA-TTACACATGC-TATGCAACTACCCTAGGCTAAGTTCTTGCCCCTACAATTTCT 1327
|||||| || ||||| | | || |||||||||||| |||| || ||| | ||| | | |
Sbjct 1237 ACGGCACTT-CACAT-CTTCTGTAACTACCCTAGGTTAAGCTCGTGCTCTTACGACGTGT 1294
Query 1328 ACTCCGAC-TATGCGGGGAATCT--CTTGGGAGCCAAGCAACCGACCTATTTAGGCCTAA 1384
|| ||| || || ||| | || ||||||| || |||||||| || |||| |||
Sbjct 1295 TCT-TGACGTACGC-GGG-AGCTGCCTTGGGAAACACGCAACCGAGTTACCTAGGTTTAA 1351
Query 1385 TGCTGACCCCGGTTTCGGTCACAGGAGTTCTAATGATCA-TCTTCATGGGTA-TCTCATT 1442
|| |||| | || ||| |||| |||||| ||||||| | |||||||||| | |||| ||
Sbjct 1352 TGATGACGTCAGTGTCGATCACGGGAGTTTTAATGAT-ATTCTTCATGGG-ATTCTCGTT 1409
Query 1443 CACCCTTGCTATGCATTACTTCAGAAGAAACATAGTGAAATTGCCTATACCATTTAACCG 1502
|| || || |||||||| || ||||| ||||||||||||||||||| ||| ||||| ||
Sbjct 1410 TACACTGGCCATGCATTATTTTAGAAGGAACATAGTGAAATTGCCTAAACCGTTTAA-CG 1468
Query 1503 -TCTTGCTGGATTTAATTCGTTTTGGTATGCTCATCATTTGCTGGTTATTGCCTACGCTC 1561
||||||||| |||||| ||||||||||||||||||||||| ||||| |||| || ||
Sbjct 1469 TTCTTGCTGGGTTTAATGCGTTTTGGTATGCTCATCATTTGTTGGTTCTTGCTTATATTC 1528
Query 1562 TTCTTATCATCCATGGTTACAT-TCTTATCATCGAGAAACCTTGGTACCAAAAGACGACG 1620
|||| ||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||
Sbjct 1529 TTCTCATCATCCATGGTTAC-TATCTTATCATCGAGAAGCCTTGGTACCAGAAGACGACA 1587
Query 1621 TGGATGTACGTGGCCATACCAATGGTGTTGTACGCGAGCGAGAGGCTTTTCTCACG---A 1677
|||||||| ||||| | || ||| |||| |||||||| |||||||| ||||||||
Sbjct 1588 TGGATGTATTTGGCCGTGCCGATGCTGTTCTACGCGAGTGAGAGGCTATTCTCACGTCTC 1647
Query 1678 GTTCAAGAACACAACCATCGTGTCCACATTATCAAAGCTATTGTATATTCAGGCAATGTT 1737
|||||||||||| |||||||||| || |||| || |||||||||||||| ||||| |||
Sbjct 1648 CTTCAAGAACACAGCCATCGTGTCAACGTTATTAAGGCTATTGTATATTCGGGCAACGTT 1707
Query 1738 CTTGCACTCTATATGACCAAACCTCAAGGGTTCAAGTACAAAAGTGGCATGTACATGTTT 1797
|||||||| || | |||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1708 CTTGCACTTTACGTAACCAAACCTCCTGGATTCAAATACAAAAGTGGCATGTACATGTTT 1767
Query 1798 GTCAAGTGCCCTGATATCTCCAAATTCGAATGGCATCCATTCTCCATCACTTCTGCACCC 1857
|||||||| |||||| |||| ||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1768 GTCAAGTGTCCTGATCTCTCAAAATTTGAATGGCATCCGTTCTCAATCACTTCTGCACCA 1827
Query 1858 GGAGATGAATATTTGAGCGTTCACATAAGAGCATTAGGAGATTGGACTTCTGAACTTAGG 1917
|||||||| ||||| || |||||||| ||||| || ||||||||||| |||||||||||
Sbjct 1828 GGAGATGATTATTTAAGTGTTCACATTAGAGCCTTGGGAGATTGGACCACTGAACTTAGG 1887
Query 1918 AACAGATTTGCAGAGACATGTGAGCCTCATCAAAAATC-G-AAA-CCTAGTCCAAAT-GA 1973
| |||||| ||| ||||||| ||||||| |||| | | | ||| |||| ||||| |
Sbjct 1888 AGCAGATTCGCAAAGACATGCGAGCCTCCTCAAGCAGCCGCAAAACCTAAACCAAACAG- 1946
Query 1974 TCTTATTAGGATGGAAACAAGAGC-GAGAGGTGCAAATCCTCATGTTGAAGAATCCCAAG 2032
|||||| ||||||||||||||||| | | |||| |||||||| |||||||||| ||||
Sbjct 1947 TCTTATGAGGATGGAAACAAGAGCTGCG-GGTGTGAATCCTCACATTGAAGAATCACAAG 2005
Query 2033 CCTTATTTCCAAGAATATTTATCAAAGGACCATATGGGGCTCCGGCACAAAGCTATCAGA 2092
|||||| |||| |||||| ||||||||||| ||||| ||||||||||||| |||||||
Sbjct 2006 TCTTATTCCCAAAAATATTCATCAAAGGACCTTATGGAGCTCCGGCACAAAATTATCAGA 2065
Query 2093 AGTTTGATATCCTTTTGTT-GATTGGGCTAGGGATCGGGGCAACCCCATTTATAAGTATC 2151
|||| |||||||| || | | |||| |||||||| |||||||| ||||| ||||| ||
Sbjct 2066 AGTTCGATATCCTCTTACTAG-TTGGACTAGGGATAGGGGCAACTCCATTCATAAGCATT 2124
Query 2152 CTAAAAGATATGTTGAATAATCTCAAACCTGGTATTCCAAAAACCGGGCAAAAGTATGAA 2211
| ||||| ||||| || |||| |||||||| ||||| | || ||||||||||| |||
Sbjct 2125 TTGAAAGACATGTTAAACCATCTAAAACCTGGGATTCCCAGAAGTGGGCAAAAGTACGAA 2184
Query 2212 GGAAGTGTAGGAGGTGAGAGCT-TAGGAGGATCA-AGTGTATA-TGGAGGA 2259
|||||||||||||| ||||| | ||||||| | | ||||| || ||| |||
Sbjct 2185 GGAAGTGTAGGAGGAGAGAG-TATAGGAGG-TGATAGTGT-TAGTGGCGGA 2232
Score = 503 bits (272), Expect = 3e-141
Identities = 407/471 (86%), Gaps = 13/471 (3%)
Strand=Plus/Plus
Query 2272 GGAGGAGGTAGTGTAAATGGAGGAGGTAGTGTAAGT---GGAGGAGGTAGA-AAGTTTCC 2327
|||||| | || ||| | ||||| | |||||| ||| |||||||| | | ||||||||
Sbjct 2194 GGAGGA-G-AGAGTATA-GGAGGTGATAGTGTTAGTGGCGGAGGAGG-AAAGAAGTTTCC 2249
Query 2328 ACAAAGAGCATATTTTTATTGGGTGACAAGAGAACAAGCTT-CTTTCGAATGGTTCAAAG 2386
|||||||||||||||| ||||||||||||||||||||||| |||| || |||||||| |
Sbjct 2250 GCAAAGAGCATATTTTTTTTGGGTGACAAGAGAACAAGCTTCCTTT-GATTGGTTCAAGG 2308
Query 2387 GAGTTATGGATGATATTGCAGTGTATGACAAAACCAATGTGATAGAGATGCATAACTACT 2446
||||||||||||| || || | |||||| |||||| |||||||||| |||||||||||||
Sbjct 2309 GAGTTATGGATGACATCGCCGAGTATGATAAAACCCATGTGATAGAAATGCATAACTACT 2368
Query 2447 TAACAAGTATGTACGAAGCAGGAGATGCGAGATCTGCTCTAATTGCTATGGTCCAGAAAC 2506
||||||| ||||||||||| |||||||| |||||||| ||||| || ||||| |||||||
Sbjct 2369 TAACAAGCATGTACGAAGCGGGAGATGCAAGATCTGCCCTAATCGCCATGGTTCAGAAAC 2428
Query 2507 TTCAACATGCCAAAAATGGTGTTGACATTGTTTCCGAGAGCCGAATACGAACCCATTTCG 2566
||||||||||||| || |||||||| ||||| ||||| ||||| |||||||| |||||||
Sbjct 2429 TTCAACATGCCAAGAACGGTGTTGATATTGTCTCCGAAAGCCGGATACGAACACATTTCG 2488
Query 2567 CAAGACCTAATTGGAGGAAGGTTTTTTCTGAATTGTCAAACAAGCACGA-GACTTCTCGC 2625
||||||||||||||||||||||||||||||| || |||| ||| ||||| | ||| |||
Sbjct 2489 CAAGACCTAATTGGAGGAAGGTTTTTTCTGAGTTATCAAGCAAACACGAAG-CTTGTCGA 2547
Query 2626 ATAGGTGTGTTCTACTGTGGAAGTCCAACGCTTGTTCGACCGCTAAAATCACTTTGTCAG 2685
|||||||| |||||||||||||||||||| || |||||||| || ||| ||||||||||
Sbjct 2548 ATAGGTGTATTCTACTGTGGAAGTCCAACACTGGTTCGACCACTTAAAGAACTTTGTCAG 2607
Query 2686 GAGTTCAGTCTCGAGTCGTCCACCCGCTTTACTTTTCACAAAGAGAA-TTT 2735
||||| ||||||||||| ||||| || |||||||| ||||| || || |||
Sbjct 2608 GAGTTTAGTCTCGAGTCTTCCACTCGTTTTACTTTCCACAAGGAAAACTTT 2658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103338834685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5