BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45850.1
Length=3675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484964 jgi|Araly1|484964|fgenesh2_kg.5__956__AT3G45850.1 5439 0.0
Ahg481773 jgi|Araly1|481773|fgenesh2_kg.4__833__AT2G28620.1 959 0.0
Ahg937273 jgi|Araly1|937273|scaffold_501464.1 270 4e-71
> Ahg484964 jgi|Araly1|484964|fgenesh2_kg.5__956__AT3G45850.1
Length=3377
Score = 5439 bits (2945), Expect = 0.0
Identities = 3242/3386 (96%), Gaps = 17/3386 (1%)
Strand=Plus/Plus
Query 297 ATGGATTCGATTCAGCAACGAAGAGGTGGGATTGTATCTCTCTCTCCAGCTCAGACACCA 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGATTCGATTCAGCAACGAAGAGGTGGGATTGTATCTCTTTCTCCAGCTCAGACACCA 60
Query 357 CGATCAAGTGACAAATCAGCAAGAGAATCGAGATCTTCTGAATCAAATTCAACCAATAGA 416
||||||||||| ||| | || ||||||||||||||||||||||||||||| || ||||||
Sbjct 61 CGATCAAGTGATAAAGCGGCTAGAGAATCGAGATCTTCTGAATCAAATTCCACTAATAGA 120
Query 417 AATGATAAAGAAAAGGGTGTGAATGTGCAGGTCATATTGCGTTGCAGGCCATTGAGTGAG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATGATAAAGAAAAGGGTGTGAATGTGCAGGTCATATTGCGTTGCAGGCCATTGAGTGAG 180
Query 477 GATGAAGCTAGAATTCATACACCGGTGGTGATTTCTTGTAACGAGAACCGTAGAGAAGTT 536
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GATGAGGCTAGAATACATACACCGGTGGTGATTTCTTGTAATGAGAACCGTAGAGAAGTT 240
Query 537 GCTGCCACTCAGAGTATTGCTGGAAAGCATATTGATAGACATTTTGCTTTCGATAAGGTC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTGCCACTCAGAGTATTGCTGGAAAGCATATTGATAGACATTTTGCTTTCGATAAGGTC 300
Query 597 TTCGGTCCAGCATCTCAACAGAAGGACTTATATGACCAAGCCATTTGTCCAATTGTGTTT 656
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 TTTGGTCCGGCATCTCAACAGAAGGACTTATATGACCAAGCCATTTGCCCAATTGTGTTT 360
Query 657 GAAGTACTTGAGGGTTACAACTGTACCATATTTGCGTATGGTCAGACCGGAACTGGAAAG 716
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 361 GAAGTACTTGAGGGTTACAACTGTACCATCTTTGCGTATGGTCAGACCGGAACTGGGAAG 420
Query 717 ACGTATACGATGGAAGGAGGTGCAAGGAAAAAGAATGGTGAGTTCCCGAGTGACGCAGGT 776
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 421 ACGTATACGATGGAAGGAGGTGCAAGGAAAAAGAATGGTGAGTTCCCAAGTGATGCAGGT 480
Query 777 GTTATTCCAAGAGCTGTTAAGCAAATTTTCGACATATTAGAAGCTCAGGGGGCTGAATAT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTATTCCAAGAGCTGTTAAGCAAATTTTCGACATATTAGAAGCTCAGGGGGCTGAATAT 540
Query 837 AGCATGAAGGTCACCTTCCTAGAACTATATAATGAGGAAATCTCAGATCTTTTAGCACCA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCATGAAGGTCACCTTCCTAGAACTATATAATGAGGAAATCTCAGATCTTTTAGCACCA 600
Query 897 GAGGAGACTATAAAATTTGTTGATGAGAAGTCTAAAAAATCGATTGCCCTCATGGAAGAC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGGAGACTATAAAATTTGTTGATGAGAAGTCTAAAAAATCGATTGCCCTCATGGAAGAC 660
Query 957 GGGAAAGGAAGTGTCTTTGTCCGTGGGTTAGAAGAAGAGATAGTAAGTACAGCGAATGAG 1016
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 661 GGGAAAGGAAGTGTCTTTGTCCGTGGCTTAGAAGAAGAGATAGTGAGTACAGCGAATGAG 720
Query 1017 ATATACAAGATCTTAGAAAAAGGTTCCGCGAAAAGGCGTACAGCTGAAACTCTTTTGAAT 1076
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATATACAAGATCTTGGAAAAAGGTTCCGCGAAAAGGCGTACAGCTGAAACTCTTTTGAAC 780
Query 1077 AAGCAAAGTAGTCGCTCTCATTCAATATTTTCCATAACCATTCACATTAAGGAAAATACT 1136
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 781 AAGCAAAGTAGTCGCTCTCATTCAATATTTTCCATCACCATTCACATCAAGGAAAACACT 840
Query 1137 CCAGAGGGAGAAGAGATGATCAAATGTGGGAAACTAAATCTTGTTGACCTTGCTGGTTCC 1196
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 841 CCAGAGGGAGAAGAGATGATTAAATGTGGGAAACTAAATCTTGTTGACCTTGCTGGCTCC 900
Query 1197 GAGAATATCTCACGTTCTGGTGCACGAGAGGGACGAGCCAGAGAAGCTGGAGAGATCAAC 1256
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 GAGAATATCTCACGCTCTGGTGCACGAGAGGGACGAGCCAGGGAAGCTGGAGAGATCAAC 960
Query 1257 AAGAGTTTACTTACTCTTGGCCGTGTCATTAACGCGCTTGTGGAGCACTCTGGTCATATT 1316
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 961 AAGAGTTTACTTACTCTTGGACGTGTCATTAACGCCCTTGTTGAGCACTCTGGTCATATT 1020
Query 1317 CCTTACAGAGATAGCAAATTGACGAGGCTCTTGAGAGAATCATTGGGAGGAAAGACGAAA 1376
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 1021 CCTTACAGAGATAGCAAATTGACAAGGCTCTTGAGGGATTCATTGGGAGGAAAGACGAAA 1080
Query 1377 ACTTGTGTAATCGCCACAATTTCACCTTCCATCCACTGTTTAGAAGAGACTCTAAGCACT 1436
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACATGTGTAATCGCCACAATTTCACCTTCCATCCACTGTTTAGAAGAGACTCTAAGCACT 1140
Query 1437 TTGGATTATGCACATCGCGCCAAGAATATCAAGAACAAACCAGAGATCAACCAGAAGATG 1496
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTGGATTATGCACATCGTGCCAAGAATATCAAGAACAAACCAGAGATCAACCAGAAGATG 1200
Query 1497 ATGAAATCTGCTGTCATGAAAGATCTGTACTCTGAGATTGACAGACTGAAGCAAGAGGTA 1556
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1201 ATGAAATCTGCTGTCATGAAAGATCTGTACTCTGAGATTGACCGACTGAAGCAAGAGGTA 1260
Query 1557 TATGCTGCAAGAGAGAAGAATGGGATTTATATTCCAAAAGACCGCTACATTCAAGAAGAG 1616
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1261 TATGCTGCGAGAGAGAAGAATGGGATTTATATTCCAAAAGACCGCTATATTCAAGAAGAA 1320
Query 1617 GCTGAGAAAAAGGCAATGGCTGAAAAGATAGAAAGATTAGAACTTCAATCAGAATCCAAG 1676
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1321 GCTGAGAAAAAGGAAATGGCTGAAAAGATAGAAAGATTAGAACTTCAATCAGAATCTAAA 1380
Query 1677 GACAAGCGAGTCGTTGACCTTCAGGAGCTATACAATTCTCAGCAGATTTTAACTGCAGAG 1736
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1381 GACAAGCGAGTAGTTGACCTTCAGGAGCTATACAATTCTCAGCAGCTTTTAACTGCGGAA 1440
Query 1737 TTGAGTGAGAAACTTGAAAAAACTGAGAAAAAGCTTGAGGAAACTGAGCACTCATTGTTT 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TTGAGTGAGAAACTTGAAAAAACTGAGAAAAAGCTTGAGGAAACTGAGCACTCATTGTTT 1500
Query 1797 GATCTTGAAGAGAAATACAGACAGGCGAATGCAACCATTAAAGAGAAGGAATTTGTGATA 1856
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1501 GATCTTGAAGAAAAATACAGACAGGCAAATGCAACCATTAAAGAGAAGGAATTTGTAATT 1560
Query 1857 TCTAATCTCCTCAAGTCAGAAAAATCACTTGTCGAGCGAGCCTTTCAGCTACGCACAGAA 1916
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1561 TCTAATCTCCTCAAGTCAGAAAAATCACTTGTCGAGCGAGCCTTTCAGCTGCGAACAGAA 1620
Query 1917 CTAGAAAGTGCATCATCAGATGTTTCCAACTTGTTTTCCAAAATAGAAAGAAAGGACAAA 1976
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CTAGAAAGTGCAGCATCAGATGTTTCCAACTTGTTTTCCAAAATAGAAAGAAAGGACAAA 1680
Query 1977 ATCGAGGATGGAAACAGATTTCTCATCCAAAAGTTCCAGTCACAGCTCACACAACAGCTT 2036
|| || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 ATTGAAGATGGAAATAGATCTCTCATCCAAAAGTTCCAGTCACAGCTCACACAACAGCTT 1740
Query 2037 GAGCTATTGCATAAGACTGTGGCTTCTTCGGTGACTCAACAAGAGGTTCAACTAAAACAC 2096
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1741 GAGCTATTGCATAAGACTGTTGCTTCTTCTGTTACTCAACAAGAGGTTCAACTAAAACAC 1800
Query 2097 ATGGAGGAAGACATGGAGTCCTTTGTGTCGACAAAATCTGAGGCTACTGAAGAACTCCGT 2156
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1801 ATGGAGGACGACATGGAGTCCTTTGTGGCGACAAAATCTGAGGCTACTGAAGAACTCCGT 1860
Query 2157 GATAGACTTTCAAAACTGAAGAGAGTTTATGGTTCTGGCATTGAAGCTCTTGATAACATA 2216
|||||||||| ||||||||||| ||| ||||| |||||||| ||||||||||||||||||
Sbjct 1861 GATAGACTTTTAAAACTGAAGACAGTGTATGGCTCTGGCATCGAAGCTCTTGATAACATA 1920
Query 2217 GCTGTGAAGCTAGATGGAAATTCTCAGTCAACATTTAGTAGCCTTAACTCAGAAGTTTCG 2276
|||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 1921 GCTGTGAAACTAGATGGAAATTCTCAATCAACATTTGGTAGCCTGAACTCAGAAGTTTCG 1980
Query 2277 AAACATTCGCATGAACTTGAGAATGTTTTCAAGGGTTTTGCTTCCGAGGCTGACATGTTA 2336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 AAACATTCGCATGAACTTGAGAATGTTTTCAAGGGTTTTGCTTCCGAGGCTGACATGTTA 2040
Query 2337 CTGCAAGATCTCCAAAGTAGCCTTAACAAACAGGAAGAGAAGCTTATTACATTTGCACAG 2396
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2041 CTGCAAGATCTCCAAAGTAGCCTTAACAAACAGGAAGAGAAGCTTATTACATTTGCTCAG 2100
Query 2397 CAGCAACGGAAGGCACACTCGCGAGCTGTGGATACAGCAAGGTCAGTTTCAAAAGTAACA 2456
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2101 CAGCAACGGAAGGCACACTCTCGAGCTGTGGATACAGCAAGGTCAGTTTCAAAAGTAACA 2160
Query 2457 GTAGAATTCTTCAAGACTCTAGACACACATGCTACCAAATTAACCGGGATAGTAGAAGAG 2516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 GTAGAATTCTTCAAGACTCTAGACACACATGCTACCAAATTAACCGGGATAGTAGAAGAG 2220
Query 2517 GCACAGACAGTTAACCACAAGAAATTGAGCGAATTTGAAAACAAGTTTGAGGAATGTGCT 2576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GCACAGACAGTTAACCACAAGAAATTGAGCGAATTTGAAAACAAGTTTGAGGAATGTGCT 2280
Query 2577 GCAAATGAAGAGAGACAATTGCTAGAGAAAGTAGCAGAGCTTCTTGCAAATTCTAATGCT 2636
|| ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 2281 GCGAATGAAGAGAGGCAATTGCTAGAGAAAGTAGCAGAACTTCTGGCAAACTCTAATGCC 2340
Query 2637 AGGAAGAAAAACCTTGTCCAAATGGCTGTACACGATCTACGCGAGAGCGCATCCACCAGA 2696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2341 AGGAAGAAAAACCTTGTCCAAATGGCTGTACACGATCTACGCGAGAGCGCATCCACCAGA 2400
Query 2697 ACTACTACCCTACAGCATGAGATGTCAACAATGCAAGATTCAACTTCTTCCATTAAAGCA 2756
|| || ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 2401 ACGACCACCCTGCAGCATGAGATGTCAACGATGCAAGATTCAACTTCTACCATTAAAGCT 2460
Query 2757 GAGTGGAGCATTCACATGGAGAAAACAGAATCAAGCCACCACGAGGACACTTCAGCAGTT 2816
||||||||| | |||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 2461 GAGTGGAGCCTGCACATGGAGAAAACAGAATCAAGCCATCATGAGGACACTTCAGCGGTT 2520
Query 2817 GAGAGCGGGAAGAAAGCTATGCAAGAAGTTCTCTTAAACTGTTTGGAGAAGACCGAGATG 2876
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2521 GAGAGCGGGAAGAAAGCTATGCAAGAAGTTCTCTTAAACTGTTTGGAGAAGGCCGAGATG 2580
Query 2877 AGTGCACATCAATGGAGGAAAGCTCAAGAATCACTTGTCAGTCTAGAACGAAACAATGTG 2936
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2581 AGTGCGCATCAATGGAGGAAAGCTCAAGAATCACTAGTCAGTCTAGAACGAAACAACGTG 2640
Query 2937 GCTTCTGTTGACTCCATCGTTAGAGGTGGCATGGATGCCAATGAGAACCTACGCTCTCAA 2996
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 2641 GCTTCTGTTGACTCCATTGTTAGAGGTGGCATGGATGCCAATGAGAACCTACGCACTAAA 2700
Query 2997 TTCTCGACCGCTGTTTCATCCTCTCTTGATGTTTTTGATGCTGCAAATAGTAGCCTCCTT 3056
|||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2701 TTCTCGTCCGCTGTATCATCCTCTCTTGATGTTTTTGATGCTGCAAATAGCAGCCTCCTT 2760
Query 3057 ACTTCCATCGATCATTCATTGCAACTCGATAATGATGCATGTACAAAGGTCAACTCCATG 3116
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2761 ACTTCCATTGATCATTCATTGCAACTAGATAACGATGCATGTACAAAGGTCAACTCCATG 2820
Query 3117 ATCATTCCATGCTGTGAAGACTTGATAGAGCTAAAGAGTGATCACAATCACAAGATCATA 3176
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 2821 ATCATTCCATGCTGTGAAGACTTGATAGAGCTCAAGAGTGATCACAATCATAAGATTGTA 2880
Query 3177 GAGATCACAGAGAATGCAGGGAAATGTCTTCTTGATGAATATGTAGTGGATGAACCATCA 3236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2881 GAGATCACAGAGAATGCAGGGAAATGTCTTCTTGATGAATATGTAGTGGATGAACCATCA 2940
Query 3237 TGTTCAACGCCAAAGAAAAGACCAATCGACATACCAAGCATTGAGTCCATCGAAGAGCTT 3296
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2941 TGTTCAACGCCAAGGAAAAGACCAATCGACATACCGAGCATTGAGTCCATCGAAGAACTT 3000
Query 3297 AGAACTCCAGCATCTGAGGAGTTACTGAGAGCGTTTCGTGATGAGAAGTTGTCGAAGCAA 3356
||||||||||||||||||||||||||||||| |||| | |||||||| |||| |||||||
Sbjct 3001 AGAACTCCAGCATCTGAGGAGTTACTGAGAGTGTTTAGAGATGAGAAATTGTTGAAGCAA 3060
Query 3357 GCCAATGGGGATGCAAagcagcagcagcagcagcaACAACAACACCTTATACGCGCTTCG 3416
||||||||||||||||||||||||||||| | |||||||| | | |||||| |||||||
Sbjct 3061 GCCAATGGGGATGCAAAGCAGCAGCAGCA--A-CAACAACA-C-C-TTATACTCGCTTCG 3114
Query 3417 TCTCTTTACGAGGCAGCTGTGTCGGATTCAAGATATCCCCTCTCTGCTGTTAACTGAAAC 3476
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3115 TCTCTTTACGAGGCAGCTGTGTCGGATTCAAGATTTCCCCTCTCTGCTGTTAACTGAAAC 3174
Query 3477 ATCAAGAGGTTTGGTATTACAAAACCCAAGGGAAGGTTAAGTGTTACACTGTACAGAGAG 3536
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 3175 ATCAAGAGGTTTGGTATTACAAAACCAAAGAGAAGGTTAAGTGTTACACTGTACAGAGAG 3234
Query 3537 AGTGTTGTTGCATTACACGT-AAAAACCtt---ttttattcatggagttttggttttc-a 3591
||| |||||||||||||| ||||| ||||||||||||||||||||||| | |
Sbjct 3235 --TGTCGTTGCATTACACGTTAAAAAAAAAAACTTTTATTCATGGAGTTTTGGTTT-CGA 3291
Query 3592 ggagtttaaaacatcagt-tttt--atttaatattctttattgtttatttatttGTACTA 3648
||| || ||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 3292 GGAATTAAAAACATCAGTGTTTTTTATTTAATATTCTTTATTGTTTATTTATTTGTACTA 3351
Query 3649 GAGAAAATATGGAAATGAATACAAAT 3674
||||||||||||||||||||||||||
Sbjct 3352 GAGAAAATATGGAAATGAATACAAAT 3377
> Ahg481773 jgi|Araly1|481773|fgenesh2_kg.4__833__AT2G28620.1
Length=3129
Score = 959 bits (519), Expect = 0.0
Identities = 2124/2881 (74%), Gaps = 182/2881 (6%)
Strand=Plus/Plus
Query 544 CTCAGAGTATTGCT-GGAAAGCATATTGAT-AGAC-ATTTTGCTTTCGATAAGGTCTTCG 600
|||||| ||| ||| ||||| || |||||| | || ||||| ||| |||||||| || |
Sbjct 254 CTCAGAATATAGCTGGGAAA-CAGATTGATAAAACGTTTTTG-TTT-GATAAGGTTTTTG 310
Query 601 GTCCAGCATCTCAACAGAAGGACTTATATGACCAAGCCA-TTTGTCCAATTGTGTTTGAA 659
| ||| |||| || || || ||||| || | |||| || ||| ||||||||| |||||
Sbjct 311 GCCCAACATCCCAGCAAAAAGACTTGTACCATCAAG-CAGTTTCTCCAATTGTCTTTGAG 369
Query 660 GTACTTGA-GGGTTACAACTGTACCATATTTGCGTATGGTCAGACCGGAACTGGAAAGAC 718
|| ||||| ||| || || || ||||| ||||| ||||| || || |||||||| |||||
Sbjct 370 GTTCTTGATGGG-TATAATTGCACCATCTTTGCATATGGGCAAACTGGAACTGGTAAGAC 428
Query 719 GTATACGATGGAAGGAGGTGCAAGGAAAAAGAATGGTG-AGTTCCCGAGTGACGCAGGTG 777
||||| ||||||||||| ||||| |||||||| |||| | || |||||||| |||||||
Sbjct 429 ATATACAATGGAAGGAGGAGCAAGAAAAAAGAACGGTGAAATT-CCGAGTGATGCAGGTG 487
Query 778 TTATTCCAAGAGCTGTTAAGCAAAT-TTTCGACATATTAGAAGCTC--AG-GGGGCTGAA 833
|||| || ||||| ||||| || || ||| || ||| | ||||| | || | ||||||
Sbjct 488 TTATCCCTAGAGCAGTTAAACAGATATTT-GATATACTGGAAGCACAAAGCGCTGCTGAA 546
Query 834 TATAGCATGAAGGTCACCTTCCTAGAACTATATAATGAGGAAATCTCAGATCTTTTAGCA 893
|| || |||| || | || || || || || ||||| ||| | |||| ||||||||
Sbjct 547 TACAGTTTGAAAGTTTCATTTCTTGAGCTCTACAATGAAGAACTGACAGACCTTTTAGC- 605
Query 894 CCAGAGGAGACTATAAAATTTGTTGATGAGAAGTCTAAA-AAATCGATTGCCCTCATGGA 952
|| | | ||| | |||||| |||||| || || ||| ||| | | || || |||||
Sbjct 606 CCCG-GAAGA-AACAAAATTCACTGATGATAAATC-AAAGAAACCTCTGGCTCTAATGGA 662
Query 953 AGACGGGAAAGGAAGTGTCTTTGTCCGTGGGTTAGAAGAAGAGATAGTAAGTACAGC-GA 1011
||| || ||||| |||| |||||||| || || |||||||| ||||| ||| || |
Sbjct 663 AGATGGAAAAGGTGGTGTTTTTGTCCGAGGATTGGAAGAAGAAATAGTGTCTACTGCTG- 721
Query 1012 ATGAGATATAC-AAGATCTTAGAAAAAGGTTCCGCGAAAAGGCGTACAGCTGAAACTCTT 1070
||||||| ||| ||| |||| || ||||| || || || || || ||||| || ||||||
Sbjct 722 ATGAGATTTACAAAG-TCTTGGAGAAAGGGTCAGCTAAGAGACGCACAGCAGAGACTCTT 780
Query 1071 TTGAATAAGCAAAGTAGTCGCTCTCATTCAATATTTTCCATAACCATTCACATTAAGGAA 1130
| || || ||||||||| | ||||||||||||||||| | || || ||||||||||||
Sbjct 781 CTCAACAAACAAAGTAGTAGATCTCATTCAATATTTTCGGTTACAATCCACATTAAGGAA 840
Query 1131 AATACTCCAG-AGGGAGAAGAGA-TGATCAAATGTGGGAAA-CTAAATCTTGTTGACCTT 1187
|||||| | |||| ||||||| || ||||| || ||||| |||||||| ||||| |||
Sbjct 841 TGTACTCCTGAAGGG-GAAGAGATTG-TCAAAAGT-GGAAAGCTAAATCTGGTTGATCTT 897
Query 1188 GCTGGTTCCGAGAATATCTCACGTTCTGGTGCACGAGAGGG-ACGAGCCAGAGAAGCTGG 1246
|||||||| |||||||| ||||| |||||||| |||||||| | ||||||| ||||||||
Sbjct 898 GCTGGTTCAGAGAATATTTCACGGTCTGGTGCTCGAGAGGGTA-GAGCCAGGGAAGCTGG 956
Query 1247 AGAGATCAACAAGAGTTTACTTACTCTTGGCCGTGTCATTAACGCGCTT-GTGGAGCACT 1305
||||||||||| ||||| || || || || |||||||| || || || || || ||||
Sbjct 957 TGAGATCAACAAAAGTTTGCTCACACTGGGACGTGTCATAAATGC-TTTGGTTGAACACT 1015
Query 1306 CTGGTCATATTCCTTACAGAGATAGCAAATTGACGAGGCTCTTGAGAGAATCATTGGGAG 1365
|||| || ||||| || ||||| ||||| ||||| || | |||||||| || || ||||
Sbjct 1016 CTGGCCACATTCCATATAGAGAAAGCAAGTTGACAAGATTATTGAGAGACTCTTTAGGAG 1075
Query 1366 GAAAGACGAAAACTTGTGTAATCGCCACAATTTCACCTTCCATCCACTGTTTAGAAGAGA 1425
|||| || ||||| |||||||| || ||| ||||||| || | || || | ||||| |
Sbjct 1076 GAAAAACAAAAACATGTGTAATTGCTACAGTTTCACCCTCTGTTCATTGCCTGGAAGAAA 1135
Query 1426 CTCTAAGCAC-TTTGGATTATGCACATCGCGCCAAGA-ATATCAAGAACAAACCAGAGAT 1483
| || ||||| || ||||||||||| || || || | | ||||| || ||||||||| |
Sbjct 1136 CACTCAGCACACTT-GATTATGCACACCGTGCGAA-ACACATCAAAAATAAACCAGAGGT 1193
Query 1484 CAACCAGAAGATGATGAAATCTGCTGTCATGAAAGATCTGTACTCTGAGATTG-ACAGAC 1542
||||| |||||||||||||| ||| ||||||||||| |||| ||||| |||| || | |
Sbjct 1194 TAACCAAAAGATGATGAAATCAGCTATCATGAAAGATTTGTATTCTGAAATTGAAC-GTC 1252
Query 1543 TGAAGCAAGAGGTATATGCTGCAAGAGAGAAGAATGGGATTTATATTCCAAAAGACCGCT 1602
||||||||||||| ||||||||||| ||||| ||||| |||||||||||||| || | |
Sbjct 1253 TGAAGCAAGAGGTCTATGCTGCAAGGGAGAAAAATGGAATTTATATTCCAAAGGAGAGGT 1312
Query 1603 ACATTCAAGAAGAGGCTGAGAAAAAGGCAATGGCTGAAAAGATAGA--AAGATTAGAACT 1660
| ||||||||||| ||||||||||||||||||||||||||||| || || || ||| |
Sbjct 1313 ATATTCAAGAAGAAGCTGAGAAAAAGGCAATGGCTGAAAAGATTGAGCAA-ATG-GAAGT 1370
Query 1661 TCAATCAGAATCCAAGGACAAGCGAGTCGTTGACCTTCAGGAGCTATACAATTCTCAGCA 1720
| ||| | || ||||||| | | ||||||||||| ||||| ||||| || | ||
Sbjct 1371 AGAGGGTGAAGCTAAAGACAAGCAAATTGTTGACCTTCAAGAGCTGTACAACTCGGAACA 1430
Query 1721 GATTTTAACTGCAG-AGTTGAGTGAGAAACTTGAAAAAACTGAGAAAAAGCT-TGAGGAA 1778
| || ||||||| | | | ||| ||||| ||||| || |||||||||||||| | | |||
Sbjct 1431 GCTTGTAACTGCTGGACT-GAGAGAGAAGCTTGACAAGACTGAGAAAAAGCTCT-ATGAA 1488
Query 1779 ACTGAGCACTCATTGTTTGATCTTGAAGAGAAATACAGACAGGCGAAT-GCAACCATTAA 1837
||||| || ||||||| ||||| ||||||||| | ||||| || | | ||||| |||||
Sbjct 1489 ACTGAACAAGCATTGTTAGATCTCGAAGAGAAACATAGACAAGC-AGTTGCAACAATTAA 1547
Query 1838 AGAGAAGGAATT-TGTGATATCTAATCTCCTCAAGTCAGA-AAAATCACTTGTCGAGCGA 1895
||| ||||| | | ||||||| |||||||| || || || |||| ||||||| || ||
Sbjct 1548 AGAAAAGGAGTACT-TGATATCCAATCTCCTTAAATCTGAGAAAA-CACTTGTTGACCGT 1605
Query 1896 GCCTTTC-AGCTAC-GCACAGAACTAG-AAAGTGCATCATCAGATGTTTCCAACTTGTTT 1952
|| | | |||| | | ||||| | | ||| |||| |||| |||||||| |||||||||
Sbjct 1606 GC-TGTAGAGCTTCAGG-CAGAATTGGCAAA-TGCAGCATCCGATGTTTCAAACTTGTTT 1662
Query 1953 TCCAAAATAGAAAGAAAGGACAAAATCGAGGATGGAAACAGATTTCTCATCCAAAAGTTC 2012
||||||| || | ||||||||||| || || | || |||| ||||||||| |||||
Sbjct 1663 GCCAAAATTGAGCGGAAGGACAAAATTGAAGACAGTAATAGATCGCTCATCCAAGAGTTC 1722
Query 2013 CAGTCACAGCT-CACACAACAGCTTGAGCTATTGCATAAGACTGTGGCTTCTTCGGTGA- 2070
|||||||| | | || || ||||| || ||| | || | ||| || ||| ||||
Sbjct 1723 CAGTCACAATTGCT-ACGGCAACTTGAACTCTTGAACAACAGTGTTGCCGGTTCAGTGAG 1781
Query 2071 CTCAACAAGAGGTTCAACTAAAACACATGGAGGAAG-ACATGG-AGTCCTTT-GTGTC-G 2126
| ||||| || ||| | || ||||||| || | |||| | || ||| || || |
Sbjct 1782 C-CAACAGGAAAAACAATTGCAAGACATGGAAAAATTA-ATGGCA-TC-TTTCGTATCTG 1837
Query 2127 ACAAA-ATCTGAGGCTACTGAAGAACTCCGTG-ATAGACTTT--CAAAACTGAAG-AGAG 2181
|||| | | ||||||||||||| ||| || | | || ||| || | ||||| | |
Sbjct 1838 -CAAAGA-CAGAGGCTACTGAAGCACTACGGGGA-AG--TTTAGCACAGTTGAAGGAAAA 1892
Query 2182 TTTATGGTTCTGGCATTGAAGCTCTT--GATAACATAGCTGTGAAGCTAGATGGAAATTC 2239
| | ||| ||||| ||| |||| ||||| ||||||| ||| || ||| ||| |
Sbjct 1893 AT-ACAATTCAGGCATC-AAG-TCTTTAGATAATATAGCTGGGAATCTGGAT--AAAGAC 1947
Query 2240 T-C-AGTCAACATTT-AGTAGCCTT-AACTCAGAAGTTTCGAAACATTCGCATGAACTTG 2295
| | ||||| ||| | | | ||| ||||| ||||| | |||||||| || | |||
Sbjct 1948 AGCCAATCAAC-TTTGAAT-GACTTGAACTCGGAAGTGACAAAACATTCTTGTGCA-TTG 2004
Query 2296 -A-GA-ATGTTTTCAAGGGTTTTGCTTCCGAGGCTGACATGTTACT-GCAAGATCTCCAA 2351
| || |||||| |||| ||| | || || ||| ||| | |||| | ||| || |||
Sbjct 2005 GAAGATATGTTTA-AAGGATTTA-CATCAGAAGCTTACACGCTACTTG-AAGGGCTTCAA 2061
Query 2352 AGTAGCCTTAACAAACAGGAAGAGAAGCT-TATTACATTTGCACAGCAGCAACG-GAAG- 2408
|| ||||| |||| || || |||||||| | | |||| ||||||| || || ||
Sbjct 2062 GGTCGCCTTCACAATCAAGAGGAGAAGCTCTCTG-CATTCACACAGCAACAGCGCGACTT 2120
Query 2409 GCACACTCGCGAGCTGTGGATACAGC-AAG-GTCAGTTTCAAAAGTAACAGT-AGAATTC 2465
||| | | ||| | ||||| | || ||| | | || || | || | || ||| |||
Sbjct 2121 GCATTC-C-CGATCAATGGATTCTGCTAAGTG-C-GTCTCCACTGTGAT-GTTAGACTTC 2175
Query 2466 TTCAAGACTCTAGACACACATGCTACCAAATTAACCGGGATAGTAGAAGAGGCACAGA-C 2524
||||| ||||||||||| ||||| || || |||| | ||| |||||| || || | |
Sbjct 2176 TTCAAAACTCTAGACACCCATGCCACTAAGCTAACAAAGCTAGCAGAAGACGCTCAAAAC 2235
Query 2525 AGTTAACCA-CAAGAAATTGAGC-GAATTTGAA-AACAAGTTTGAGGAATGTGCTGCAAA 2581
|| ||| | || |||||| | | | ||| | || || || ||||||| ||||||
Sbjct 2236 -GTCAACGAGCA-GAAATT-ATCTGCATTC-ACTAAGAAATTCGAGGAATCCATTGCAAA 2291
Query 2582 TGAAGAGAGACAATTGCTAGAGAAAGTAGCAGAGCTT-CTTGCAAATTCTAATGCTAGGA 2640
|||||| | |||| |||| || ||||| || || || || |||| ||| || |||||||
Sbjct 2292 TGAAGAAAAACAAATGCTTGAAAAAGTGGCGGAA-TTACTAGCAAGTTCAAACGCTAGGA 2350
Query 2641 AGAAA-AACCTTG-TCCAAATGGCTGTACACGATC-TACGCGAGAGCG--CATCCACC-A 2694
||||| || ||| | || || ||||| || || | ||||||| || | |||| || |
Sbjct 2351 AGAAAGAA--TTGGTTCAGATAGCTGTGCAGGA-CATACGCGA-AG-GATCATCTTCCCA 2405
Query 2695 GAACTACTACCCTACAGCATGAGATGTCAACAATGCAAGATTCAACTTCTTCCATTAAAG 2754
||| | | | ||||| || ||||| ||||||||||||| |||| || ||||||
Sbjct 2406 -AACCGGTGCATTGCAGCAAGAAATGTCTGCAATGCAAGATTCTGCTTCGTCGGTTAAAG 2464
Query 2755 -CAGAGTGGAGCATTCACATGGAGAAAACAGAATCA-AGCCACCACGAGGACACTTCAGC 2812
| |||||| | |||||||| || | ||||| | | | | ||| ||| ||| ||
Sbjct 2465 TCC-AGTGGAACGCTCACATGGTCCAAGCGGAATCTCATC-ATCTCGATAACATTTCCGC 2522
Query 2813 AGTTGAGAGCGGGAA-GAAAGCTATGCAAGAAGTT-CT-CTTAAACTGTTTGGAGAAGAC 2869
||||||| | | || | ||| |||||| ||| | || || ||| || ||||||| |
Sbjct 2523 AGTTGAG-GTTGCAAAGGAAGATATGCA-GAAAATGCTTCTAAAA-TGCCTGGAGAATTC 2579
Query 2870 CGAGAT-GAGTGCACATCAATGGAGGAAAGCTCAAGAATCACTT-GTCAGTC-TAGAACG 2926
| | | | | || ||||||| || |||||||||||| || ||| | | ||||| |
Sbjct 2580 AAAAACCG-GAACCCAACAATGGAAGACCGCTCAAGAATCA-TTAGTC-GACCTAGAAAG 2636
Query 2927 AAACAATGTGGCTTCTGTTGACTCCATCGTTAGAGGTGGCATGGATGCCAATGAGAACCT 2986
|| ||||| || | | ||||| || | |||| | ||| || ||||||||| ||
Sbjct 2637 AAGGAATGTTGCAACCGCAGACTCTATTATCCGAGGAGCCATAGAAAACAATGAGAAGCT 2696
Query 2987 ACGCTCTCAATTCTCGACCGCTGTTTCATCCTCTCTTGAT-GTTTTTGATGCTGCAAATA 3045
||| | || || || |||| || ||| || || || | | | ||||| ||||||| |
Sbjct 2697 ACGAGCGCAGTTTTCTTCCGCGGTCTCAACCACT-TTAAGCGATGTTGATTCTGCAAACA 2755
Query 3046 G---TAGCCTCCTTACTTCCATCGATCAT-TCATTGCAACTCGATAATGATGCATGTACA 3101
| || |||| | | | |||| || || || || ||||||||||| || |||| ||
Sbjct 2756 GCGATATCCTC-TCA-T-CCATTGA-CAACTCGTTACAACTCGATAAAGACGCATCCACG 2811
Query 3102 AAGGTCAACTCCATGATCATTCCATGCTGTGAA-GACTTGATAGAGCTAAAGAG-TGATC 3159
| || || |||| ||| |||| |||| |||| | ||||| ||| |||| || | | |
Sbjct 2812 GATGTTAATTCCACAATCGTTCCTTGCTCTGAAAG-CTTGAAAGAACTAA-GAACTCACC 2869
Query 3160 ACAATC-ACAA-GATCATAGAGATCACAGAGAATGCAGGGAAATGTCTTCTTGATGAATA 3217
|| | | |||| | |||| || |||| | |||| |||| ||||||||| | |||| ||
Sbjct 2870 ACGA-CGACAACG-TCATCGAAATCAAACAGAACACAGGAAAATGTCTTGGTCATGAGTA 2927
Query 3218 TGTAG-TGGATGAACCATCATGTTCAACGCCAAAGAAAAGACCAAT-CGACATACCAA-G 3274
|| |||||||| || || | || || || | ||| ||| | | | |||| |||| |
Sbjct 2928 CA-AGGTGGATGAAGCAACAAGCTCGACACCGAGGAAGAGAG-AGTACAACATTCCAACG 2985
Query 3275 CATTG-AGTCCATCGAAGAGCTTAGAACTCCAG-CATCTGAGGAGTTACTGAGAGCGTTT 3332
||| | || || ||||| |||| ||| || | | | |||||| || ||| |||||||
Sbjct 2986 G-TTGGA-TCAATAGAAGAACTTAAAACGCC-GTCGTTTGAGGAATTGTTGAAAGCGTTT 3042
Query 3333 C 3333
|
Sbjct 3043 C 3043
> Ahg937273 jgi|Araly1|937273|scaffold_501464.1
Length=215
Score = 270 bits (146), Expect = 4e-71
Identities = 152/155 (98%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 1 CATCTCTTCTTCTGCTTTGAGAAGAAGGAACAATAAATGCAGTTGAAGTCACActctctc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 186 CATCTCTTCTTCTGCTTTGAGAAGAAGGAACAATAAATGCACTTGAAGTCACACTCTCTC 127
Query 61 tctctctctcCAAGTCGCTCTCTTTCGAATCCACCATTGCTGAAACTTGATCCTTCTCTG 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TCTCTCTCTCCAAGTCTCTCTCTTTCGAATCCACCATTGCTGAAACTTGATCCTTCTCTG 67
Query 121 TAAGTCTTCAAATCTCCAGAGTGGGTTTTGCTTCC 155
||||||| |||||||||||||||||||||||||||
Sbjct 66 TAAGTCTACAAATCTCCAGAGTGGGTTTTGCTTCC 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138834026304
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5