BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45870.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484967 jgi|Araly1|484967|fgenesh2_kg.5__959__AT3G45870.1 1988 0.0
> Ahg484967 jgi|Araly1|484967|fgenesh2_kg.5__959__AT3G45870.1
Length=1281
Score = 1988 bits (1076), Expect = 0.0
Identities = 1217/1285 (95%), Gaps = 9/1285 (1%)
Strand=Plus/Plus
Query 1 CTTTCTCCGGGAATAAGAATCGCCGGAAAAGAAGAAAACC-GCCAATGGAGAGTACGGTG 59
|||||| |||||||| |||||| ||||||||||| ||||| ||| |||||| || ||||
Sbjct 1 CTTTCTACGGGAATAGGAATCGTCGGAAAAGAAG-AAACCGGCCGATGGAGGGTGTGGTG 59
Query 60 GAAAGAGAGGCGTGGAAAGCTCACGTGGCGATGATCGGTGTGCAATTGTTCAACGGAGGA 119
|| |||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 60 GAGAGAGAGGCGTGGAAGGCTCATGTGGCCATGATCGGTGTGCAATTGTTCAATGGAGGA 119
Query 120 TATCATGTCATTACCAAAGTGGCTCTCAACGTTGGTGTAAACCAACTTGTCTTCTGTGTC 179
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 120 TATCATGTTATTACCAAAGTGGCTCTCAACGTTGGCGTAAACCAACTCGTCTTCTGCGTT 179
Query 180 TTTCGTGATCTCATTGCTCTCTCCATTCTTGCTCCTCTTGCTTATATCCGTGATAAGA-G 238
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| |
Sbjct 180 TTTCGTGATCTCATTGCTCTCTCCATTCTTGCTCCTCTCGCTTATTTCCGTGACAAGATG 239
Query 239 AACAAGACCTCCTTTGAATCGACAGTTTCTCTTAGCTTTCTTCTTCCTTGG-TTTAACAG 297
||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |
Sbjct 240 -ACAAGACCTCCTTTGAATCGACAATTTCTCTTAGCTTTCTTCTTCCTTGGCTTT-ACTG 297
Query 298 GGATATTTGGTAATCAGCTTTTGTTCCTCATTGGTCTGAATTACACCAATCCAACTTATG 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 298 GGATATTTGGTAATCAGCTTTTGTTCCTCATTGGTCTCAATTACACCAATCCAACTTATG 357
Query 358 CTGCAGCCATTCAGCCGTCGATCCCGGTTTTTACTTTCATCTTGGCTCTCATTATGGGAA 417
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 358 CTGCAGCCATTCAGCCGTCGATCCCGGTTTTTACGTTCATCTTGGCTCTCATTATGGGAA 417
Query 418 CAGAGAGACTGAATTTATTCAAGCTAGAAGGTCAAGCTAAGGTAGGAGGCACACTGATTT 477
|||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||||
Sbjct 418 CAGAGAGACTAAATTTATTCAAGCTAGAAGGTCAAGCAAAGGTAGGAGGTACGCTTATTT 477
Query 478 GTGTCGC-TGGGGCGGTGCTGATGGTTTTGTTTCGTGGACTGGCTTTGTTTGGGGAAACA 536
||||| | ||||||||| |||||||||||||||||||||| |||||||||||| ||||||
Sbjct 478 GTGTC-CTTGGGGCGGTACTGATGGTTTTGTTTCGTGGACCGGCTTTGTTTGGAGAAACA 536
Query 537 GAGGCTGAGTCCTTGGGTCATGGTGAATCAAGACACACTGAAACATCTGGACACTTCATG 596
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 537 GAGGCTGAGTCCTTGGGTCATGGTGAAACAAGACACACTGAAACATCTGGACACTTCATG 596
Query 597 TCTGGCTTTTTTAATGGACTTGGGCGATGGAATTTGGGAGTTTTGTGTTTGATTGGGAAT 656
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 597 TCTGGCTTTTTTAATGGACTTGGAAGATGGAATTTAGGAGTTTTGTGTTTGATTGGGAAT 656
Query 657 TGCACTTGCATGGCTGCTTTTCTTGCTATTCAGGCTCCGGTCTTAAAGAAGTATCCGGCG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 657 TGCACTTGCATGGCTGCTTTTCTTGCTATTCAGGCTCCGGTCTTAAAGAAGTACCCGGCG 716
Query 717 AATCTTTCAGTCACAGCATACTCGTATTTCTTTGGGACCATGTTTATGGTGACATCTGCT 776
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 717 AATCTTTCAGTCACAGCATACTCGTATTTCTTTGGGACAATGTTTATGGTGACATCTGCT 776
Query 777 TTTTTCATGACTAATGAGTCGACGAACTGGAGTCTCACAAGATCCGAGTTCTTTGCAGTT 836
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTTTTCATGACAAATGAGTCGACGAACTGGAGTCTCACAAGATCCGAGTTCTTTGCAGTG 836
Query 837 GTCTACGCAGGAGTAATCGCGTCTGCTCTCAACTATGGTCTCTTGACATGGTCAAATAAG 896
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 837 GTCTACGCAGGAGTAATCGCGTCTGCCCTCAACTATGGTCTCTTGACATGGTCAAATAAG 896
Query 897 ATCTTGGGTCCTTCCTTGGTTGCTCTCTATAATCCTCTTCAACCCGCAGCCTCAGCTTTC 956
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 897 ATCTTAGGTCCTTCCTTGGTTGCTCTCTATAATCCTCTTCAACCTGCAGCCTCAGCTTTC 956
Query 957 TTGTCCAGAATCTTCCTTGGAAGCCCTATCTACTTGGGGAGCATTTTAGGCGGATGTGCA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTGTCCAGAATCTTCCTTGGAAGCCCTATCTACTTGGGGAGCATTTTAGGCGGATGTGCA 1016
Query 1017 ATCATAGCAGGTCTTTATAGTGTCACCTGGGCATCTTACAAAGAAAAGAAAGCGGCAGCA 1076
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1017 ATCATCGCAGGTCTTTACAGTGTCACCTGGGCGTCTTACAAAGAAAAGAAAGCGGCAGCA 1076
Query 1077 GCAATGGCTGTGATCCCGATCACCTCAAAGGAAGCTGAACCCTTGATCTACAAGGACCAT 1136
|||| || | |||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1077 GCAACGGGTATGATCCCGATCACCTCAAAGGAAGCTGAACCCTTTATCTATAAGGACCAT 1136
Query 1137 AAAAACAAACCAATAGGACATCTATTCACAAAATCTCCCATCTCTTCACCAAAATCCGAT 1196
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1137 AAGAACAAACCAATAGGACATCTATTCACAAAATCTCCCATCTCTTCACCAAAATCCGCT 1196
Query 1197 GATTGAACAAAAACTCTGGCTTCTTGAA-TTACTTGGGTGCTCCGATGTTTTCTTAACCT 1255
|||| |||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct 1197 GATTAAACAAAAAGTCTGGCTTCTTGAAATTACTTGGGTGCTCCAATGTTTTCTTGACCT 1256
Query 1256 TTTGCCGACGAGAGAGTGACTATTT 1280
||||||||| ||| |||||||||||
Sbjct 1257 TTTGCCGACAAGATAGTGACTATTT 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5