BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45880.1
Length=1983
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484968 jgi|Araly1|484968|fgenesh2_kg.5__960__AT3G45880.1 2069 0.0
> Ahg484968 jgi|Araly1|484968|fgenesh2_kg.5__960__AT3G45880.1
Length=1881
Score = 2069 bits (1120), Expect = 0.0
Identities = 1501/1679 (89%), Gaps = 50/1679 (3%)
Strand=Plus/Plus
Query 1 GTCAATGGCTAAAGAGATAGAGAATTTATGGAGAGAAGTGAGAGAATTGAGCTTAGGAAC 60
||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GTCAATGGCTAAAGAGATACAAAATTTATGGAGAGAAGTAAGAGAATTGAGCTTAGGAAC 60
Query 61 TAAAATCGATCGTTTTGATTCTCAACCGTCTCCGGTGAAGTTTCTCCGAAACTACGTGTC 120
||||||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct 61 TAAAATCGATCGTCTTGATTCACCACCGTCTCCGGTGAAGTTTCTCCGTGACTACGTGTC 120
Query 121 TCAGAGCAAGCCTTGTGTAATCTCCAAAGCTATTACTCATTGGCCGGCGT-TAAAACTCT 179
|||||||||||| |||||||||||||| |||||| |||||||||| || | |||||||||
Sbjct 121 TCAGAGCAAGCCGTGTGTAATCTCCAACGCTATTTCTCATTGGCCAGC-TCTAAAACTCT 179
Query 180 GGTCAGATCCGGCTTACCTCACCGGAGCTTTGTCAGATGACGTTGTCTCGCTACATCTCA 239
|||||||||| || |||||| |||||||||||||||||||| |||| || |||||||||
Sbjct 180 GGTCAGATCCAGCCTACCTCGCCGGAGCTTTGTCAGATGACTTTGTTTCATTACATCTCA 239
Query 240 CTCCTAACGGCTGCGCAGACGCCGTCACCGGAGATAGTGATCTTTGTTTCGCTTCGGCTC 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 CTCCTAACGGCTGCGCAGACGCCGTCACCGGAGATAGAGATCTTTGTTTCGCTTCGGCTC 299
Query 300 ATGTTGAGAAAG-TTCTGTTCCCGGAGGCTCTTAAGGTTGTTCAATCGTCGTGTAAAGGA 358
|||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 300 ATGTTGAGAAAGTTTC-GTTCCCGGAGGCTCTTGAGGCTGTTCAATCGTCGTGTAAAGGA 358
Query 359 CTGAAGGTTGGGTATTTGCAACAGCAAAACGATTGTTTTAGAACGGAGTATTCGACGGTT 418
|| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 359 CTAAAGGTTGGGTATTTACAACAGCAGAATGATTGTTTTAGAACGGAGTATTCGACGGTT 418
Query 419 GCGTTAGACTGCGACGGTGATATTGAGTGGGCTACGGAGGCATTTGGTTGTTCGCCGGAA 478
|||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct 419 GCGTTAGACTGCGACGGTGAGATTGCGTGGGCTACGGAGGCGTTTGGTTGTTCGCCGGAA 478
Query 479 GCTGTGAACCTTTGGATTGGTACTGATGACTCCGTGACTTCATTTCATAAAGATCACTAT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCTGTGAACCTTTGGATTGGTACTGATGACTCCGTGACTTCATTTCATAAAGATCACTAT 538
Query 539 GAGAATCTTTACGCTGTTGTTTCAGGGGAGAAACATTTCCTTCTTCTTCCTCCGACTGAT 598
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 539 GAGAATCTATACGCTGTTGTTTCAGGGGAGAAACATTTTATTCTTCTTCCTCCGACTGAT 598
Query 599 GTTCACCGTCTCTATATCGAACAGTATCCGGCAGCTAATTACTCTTACCACCGAGATACT 658
|| ||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||
Sbjct 599 GTACACCGCCTCTATATCGAACAATTTCCGGCGGCTAATTACTCTTACCACCGAGATACT 658
Query 659 GATGCGTTCAAGCTTGAGGTTGAGGAGCCGGTTAGGCATGTACCTTGGTCTAGTGTTGAT 718
|| | ||||||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 659 GAAGTGTTCAAGCTTGAGATTGAGGAGCCAGTGAGGCATGTACCTTGGTCTAGTGTTGAT 718
Query 719 CCATACCCTTCGCCAGAGAAGGAAGCAAGCGAGAGATTGAAATTTCCGTTGTTCTTTGAT 778
|||||||||||||||||||| |||||||| ||||||||||| | |||||||||||| ||
Sbjct 719 CCATACCCTTCGCCAGAGAAAGAAGCAAGTGAGAGATTGAAGTATCCGTTGTTCTTCAAT 778
Query 779 GGCCCGAAGCCGTTTCATTGTACTGTCAAGGCTGGCGAGGTTCTTTACCTGCCAAGCATG 838
||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 779 GGCCCAAAGCCGTTTCATTGTACCGTCAAGGCTGGCGAGATTCTTTACCTGCCAAGCATG 838
Query 839 TGGTTTCACCATGTTAGTCAAACCCCAGGAGATGGAGGTTATACCATTGCAGTGAACTAT 898
||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 839 TGGTTTCACCATGTTAGTCAAACCCCAGGAGATGGTGGCTATACCATTGCGGTGAACTAC 898
Query 899 TGGTATGACATGCAGTTTGACATCAAGTATGCTTATTTTAACTTCTTGCAATCTTTATTA 958
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
Sbjct 899 TGGTATGACATGCAGTTCGACATCAAGTATGCTTACTTCAACTTCTTGCAATCTTTATCA 958
Query 959 TACAAGTCATCTTCACTCAATCCAGTTCTTTCTTGGAGAGAAGACGAAGATTCAGAATCC 1018
||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 959 TACCAGTCATCTTCACTCAATCCAGTTCTGTCTTGGAGAGAAGACAAAGATTCAGAATCC 1018
Query 1019 AGTGATGCAGAGATTGCTCCCTGATTTAATGGTGGAACTCTGAAGCCATCATCTATATAA 1078
|||||||||||||||| ||||||| ||||||||| | |||||||||||| |||||| ||
Sbjct 1019 AGTGATGCAGAGATTGTTCCCTGAATTAATGGTGTATCTCTGAAGCCATTGTCTATAGAA 1078
Query 1079 AAGCTCTTGTGGCTGTGTTTGGTTCAATATGTTCTTTAATTAAAATCTCCAGAGTAATTC 1138
|| ||||||||| ||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 1079 AACCTCTTGTGGATGTGTTTGGTTCAATATGTTCTTTAGTTAAAATC---AGA-TAA--- 1131
Query 1139 AGATAAAAACTCTGGAACTGGGTCCATGGTCAACTTCTTGTCATGAATCCCATACATAAC 1198
| | | |||||||||||| ||||||||||||||||| || || ||||| ||| |||
Sbjct 1132 A-A-A----CTCTGGAACTGGCTCCATGGTCAACTTCTTCTCGGGAGTCCCAAACAGAAC 1185
Query 1199 CT-G---CCGTTATTAACGCCATCCAGAGGATCGAACTCCTTGTTGCTTGACTTCCGACA 1254
| | ||| | | || ||||||| ||| || | | |||||||||||| ||||||
Sbjct 1186 TTTGAAACCGCGA--A--GCTATCCAGAAAATCAAAGTACATGTTGCTTGACT-CCGACA 1240
Query 1255 TTCTTGGGTTACTGGATTGTCTTTCTCCGTCTGGAACCGAAGAGCTGTACTCTTCTCTGG 1314
||||||||||| |||||||||||||| | ||||||||||||| || ||| |||||||||
Sbjct 1241 TTCTTGGGTTAATGGATTGTCTTTCTTCACCTGGAACCGAAGATCTATACACTTCTCTGG 1300
Query 1315 CTCAGAAATCAACTGACTC--GTGATCGCTGGTGGGGCTTATAGAGCTGCAAGTTCACAT 1372
| ||| ||||||||||| | ||||| ||| |||||||||| ||||||||||| |||||
Sbjct 1301 CCCAGGAATCAACTGACACATGTGATTGCTACTGGGGCTTAT-GAGCTGCAAGTCCACAT 1359
Query 1373 TTTGAAATCTGGGGTAAGACCAACCTTGCAGTTTCTCAACCGTCTTTTTGATGTGTGTAT 1432
| |||||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||
Sbjct 1360 TATGAAATCTGGTGTAAGACCGACCTTGCTGTTTCTCAACCGTCTTTTTGATTTGTGTAT 1419
Query 1433 CATGTTGGCGCCTGGACCTCGCCCGCCACATAT-GGAATAAATGCCCTACAGAGATTTTC 1491
|| | | ||||| |||||||| |||||| ||| ||||| | |||||||| ||||
Sbjct 1420 CA------C-C-TGGACATCGCCCGCAACATATTGGA-TAAATTCTGTACAGAGAGTTTC 1470
Query 1492 GTTGCTCTGCAATTGTTATCATCAGCTGTATAGCCTGTATTGCAATGGATGGTTACCAAA 1551
|| ||| ||||||||||| ||||||||||| || || | |||||||||||||||
Sbjct 1471 ATTCCTCGGCAATTGTTATTATCAGCTGTAT----TG-AT---A-TGGATGGTTACCAAA 1521
Query 1552 ATGCCACTTCTCTCCTTGTTG-CTATGTTGAACAACATAATGTGATGTGTTCTAAAAGCA 1610
| ||||||||| || |||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 1522 ACGCCACTTCTTTCTTTGT-GACTATGTTGAACACCATAATGTGATGTGTTCTAAAAGCA 1580
Query 1611 TGTGCCTTGATTTCAGATTTAACATCAGGGAAGCAAGTTCACTCCCTCTGCCACAAATT 1669
|| ||| ||| | ||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1581 TGCGCCATGAGTGCAGATTTAATATCAGGGAAGCAAGTTCACTCCCTATGCCACAAATT 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74542609465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5