BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45890.1
Length=2054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937278 jgi|Araly1|937278|scaffold_501469.1 2867 0.0
> Ahg937278 jgi|Araly1|937278|scaffold_501469.1
Length=1882
Score = 2867 bits (1552), Expect = 0.0
Identities = 1782/1888 (94%), Gaps = 35/1888 (2%)
Strand=Plus/Plus
Query 1 GAAGAGGAAGAAGAAGATGAGTTGTTCTTATCT-ACTTTCTGGTGACGCTTCCGTCGTCG 59
||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
Sbjct 5 GAAGAGGAAGAAGAAGATGAGTTGTTCTTATCTGA-TTTCTGGTGACGGTTCCGTCGTAG 63
Query 60 CTTCACGGCGGTGGAGTGATGTTTCTTCCCGGCAGCGTTTATTTCTCCCACGGCAATCAC 119
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 64 CTTCACGGCGGTGGAGTGATGTTTCTTCCCGGCAGCGTTTATTTCTTCCACGGCAATTAC 123
Query 120 TCCGGCAGCCATCGGGTTCTTCGTTTTCCCGATGCGTCCGATTAGTCGCTAATGTAAATG 179
||||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||
Sbjct 124 TCCGGCAGCCACCACTTTCTTCGCTTACCCGATGCGTCCGATTAGTCGCTAATGTGAATG 183
Query 180 ATCATTTCAGTAAACAATCACT-CGCGACGAGAAATTGCTTGGCTTCAGTGTTTAGT-GC 237
|| | ||||||||||||||| | ||||||||||||||| || ||||||||||||||| |
Sbjct 184 ATAACTTCAGTAAACAATCA-TACGCGACGAGAAATTGTTTTGCTTCAGTGTTTAGTAG- 241
Query 238 AGACTTGGGTGGAAGTAACGGTAATAATGATAACGGAAAT---GGC-G-G-CGGT----- 286
|||| | || ||||||||||| ||||| || ||||||||| ||| | | |||
Sbjct 242 AGACGTCGGCGGAAGTAACGGCAATAACGACAACGGAAATGACGGCGGTGATGGTGGAGA 301
Query 287 -GGCGG-AGG-AG----ACGGCGGCGGCGATAACTCTGATGATTCTTCTTTCGA-TTTGA 338
||||| || | ||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 302 CGGCGGTTGGTGGTTTAACGGCGGCGGCGATAACTCTGATGACTCTTCTTTC-AGTTTGA 360
Query 339 GATACCTCTGCTTTCTTTTATTGGGCTTGTCTTGCTTCTTCCATTTCCGATTATCAGCTG 398
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 GATACCTCTGCTTTCTTGTATTGGGATTGTCTTGCTTCTTCCATTTCCGATTATCAGCTG 420
Query 399 CGTCCGCCATAGCTAAAG-ATCAAAATTCGGATAGTAATGGAGATGCTGTGAAAGAGACG 457
| |||||||||||||||| || | |||||||||||| || |||| || ||||||||||
Sbjct 421 CTTCCGCCATAGCTAAAGCTTC-AGATTCGGATAGTAGTGAAGATAATGAGAAAGAGACG 479
Query 458 GTTTGGGAAGTGAGAGGAAGTAAAAGGAAGAGACTAGTTCCCGATTTTGTCAAAGATGAG 517
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 480 GTTTGGGAAGTGAGAGGAAGTAAAAGGAAGAGACTAGTTCCTGATTTCGTCAAAGATGAG 539
Query 518 TTCGTCTCTGAAGAATCTGCTTTTGAATTATCATCTTCTCTAACTCCTGAGAATCTCCTA 577
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTCGTCTCTGAAGAATATGCTTTTGAATTATCATCTTCTCTAACTCCTGAGAATCTCCTA 599
Query 578 GCTCAATGTAGAAACCTTCTCACTCAATTCCTTCTTCCTGAAGGTTTTCCC-AATAGTGT 636
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 600 GCTCAATGTAGAAACCTTCTCACTCAATTCCTTCTTCCTGAAGG-TTTCCCGAATAGTGT 658
Query 637 AACTTCTGATTACCTCGATTACTCTCTCTGGAGAGGTGTTCAAGGTATTGCTAGTCAAAT 696
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 659 AACTTCCGATTACCTCGATTACTCTCTCTGGAGAGGTGTTCAAGGAATTGCTAGTCAAGT 718
Query 697 CAGCGGCGTTCTTGCCACTCAGTCTTTGCTTTATGCAGTTGGGTTAGGTAAAGGAGCAAT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CAGCGGCGTTCTTGCCACTCAGTCTTTGCTTTATGCAGTTGGGTTAGGTAAAGGAGCAAT 778
Query 757 TCCTACAGCTGCAGCTATCAATTGGGTGCTTAAAGATGGAATTGGGTATCTTAGTAAGAT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCCTACAGCTGCAGCTATCAATTGGGTGCTTAAAGATGGAATTGGGTATCTTAGTAAGAT 838
Query 817 AATGTTGTCGAAATACGGACGACATTTCGATGTTCATCCCAAAGGATGGAGGCTATTTGC 876
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 839 AATGTTGTCGAAATACGGACGTCATTTCGATGTTCATCCCAAAGGATGGAGGCTATTTGC 898
Query 877 TGATCTTCTTGAAAACGCTGCTTTTGGTATGGAGATGCTT-ACGCCAGTCTTCCCTCAGT 935
|||||| |||||||||||||||||||||||||||||| || || || |||||||||||||
Sbjct 899 TGATCTACTTGAAAACGCTGCTTTTGGTATGGAGATG-TTGACACCGGTCTTCCCTCAGT 957
Query 936 TTTTCGTTATGATCGGTGCTGCTGCTGGTGCTGGTCGATCTGCTGCTGCATTGATTCAGG 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTTTCGTTATGATCGGTGCTGCTGCTGGTGCTGGTCGATCTGCTGCTGCATTGATTCAGG 1017
Query 996 CTGCTACTAGAAGTTGCTTCAATGCTGGCTTTGCTTCTCAAAGGAACTTTGCTGAGGTAA 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTGCTACTAGAAGTTGCTTCAATGCTGGCTTTGCTTCTCAAAGGAACTTTGCTGAGGTAA 1077
Query 1056 TTGCCAAGGGTGAAGCTCAAGGAATGGTGAGCAAGTCAGTGGGTATTCTGCTAGGAATAG 1115
||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1078 TTGCCAAAGGTGAAGCTCAAGGAATGGTGAGCAAGTCAGTGGGTATCCTGCTCGGAATAG 1137
Query 1116 TGGTTGCCAATTGCATAGGAACCTCTACAAGTCTTGCCCTTGCTGCATTTGGAGTTGTGA 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGGTTGCCAATTGCATAGGAACCTCTACAAGTCTTGCCCTTGCTGCATTTGGAGTTGTGA 1197
Query 1176 CTACAATCCATATGTATACCAATCTCAAATCTTACCAGTGTATCCAGCTCCGGACTCTAA 1235
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1198 CAACAATCCATATGTATACCAATCTCAAATCTTACCAATGTATCCAACTCCGGACTCTAA 1257
Query 1236 ACCCATACCGTGCAAGTTTGGTTTTTAGTGAATATCTAATCAGCGGCCAAGCTCCTCTAA 1295
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1258 ACCCATACCGTGCAAGTTTGGTTTTTAGTGAATATCTCATCAGTGGCCAAGCTCCTCTAA 1317
Query 1296 TCAAGGAGGTCAACGATGAAGAACCGCTCTTCCCAACAGTTCGGTTTTCAAACATGAAAT 1355
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1318 TCAAGGAGGTCAACGATGAAGAACCGCTCTTCCCAACAGTTCGGTTTTTAAACATGAAAT 1377
Query 1356 CTCCAGAAAAGCTGCAAGATTTTGTCTTATCATCAGAAGCAAAAGCAGCAGCCGCAGACA 1415
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1378 CTCCAGAAAAGCTGCAAGATTTTGTCTTATCATCAGAAGCGAAAGCAGCAGCCGCAGACA 1437
Query 1416 TAGAGGAACGGCTTCAACTAGGGTCAAAGCTCAGCGATGTTATCCACAACAAGGAAGAAG 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TAGAGGAACGGCTTCAACTAGGGTCAAAGCTCAGCGATGTTATCCACAACAAGGAAGAAG 1497
Query 1476 CAATAGCACTGTTTGATCTATATCGCAATGAAGGCTACATCCTTACAGAACACAAAGGAA 1535
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1498 CAATAGCACTGTTTGATCTGTATCGCAATGAAGGCTACATCCTTACAGAACACAGAGGAA 1557
Query 1536 GATTCTGCGTGATGCTCAAGGAAAGCTCAACTCCACAAGACATGCTCAGGTCATTGTTTC 1595
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1558 GATTCTGCGTGATGCTCAAGGAAAGCTCAACTCCACAAGACATGCTCAGGTCGTTGTTTC 1617
Query 1596 AAGTGAACTACCTCTACTGGCTAGAGAAGAATGCTGGGATCGAACCCGCAAGCACTTACT 1655
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1618 AAGTGAACTACCTCTACTGGCTAGAGAAGAATGCTGGGATCGAACCTGCAAGCACTTACA 1677
Query 1656 CAGACTGCAAACCCGGTGGTCGCCTTCACATTTCTTTAGATTATGTGCGACGAGAGTTTG 1715
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1678 CAGACTGCAAACCGGGCGGTCGGCTTCACATTTCTTTAGATTATGTGCGACGAGAGTTTG 1737
Query 1716 AACACGCCAAAGAAGACAGCGAATCAGTAGGTTGGGTCACTGAAGGACTGATAGCTAGAC 1775
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 1738 AACACGCCAAAGAAGACAGTGAATCAGTGGGTTGGGTCACTGAAGGACTGATAGCTAGGC 1797
Query 1776 CTCTACCAACCAGAATCCGTCTAGGTCATGATCGTGAACTATTATTATCTTCTCCAAACA 1835
||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct 1798 CTCTACCAACCAGAATCCGTCTAGGTCATGATCGTGAACCATTAT---CTTCTCCTTCCA 1854
Query 1836 GCTCATAAACTCAGAGCAAAACCATGGC 1863
|||||||||||||||||||||||| |||
Sbjct 1855 GCTCATAAACTCAGAGCAAAACCAGGGC 1882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77247016860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5