BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45900.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484970 jgi|Araly1|484970|fgenesh2_kg.5__962__AT3G45900.1 2067 0.0
> Ahg484970 jgi|Araly1|484970|fgenesh2_kg.5__962__AT3G45900.1
Length=1432
Score = 2067 bits (1119), Expect = 0.0
Identities = 1267/1336 (95%), Gaps = 20/1336 (1%)
Strand=Plus/Plus
Query 112 gaagaagaagaagagagattgagaatgagaagcttcgttgaggaagaaaaagagcatgat 171
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 103 GAAGAAGAAGAAGAGAGATTGAGAATGAGAAGCTTCGTTGAGGAAGAAGAAGAGCATGAT 162
Query 172 gaaTTGAAGAAACTAGCAAAATCATTTCTAGTTTTAAGCTTCTCAGTAATGTTAGCTCAT 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GAATTGAAGAAACTAGCAAAATCATTTCTAGTTTTAAGCTTCTCAGTAATGTTAGCTCAT 222
Query 232 CTCCCAAACGACGCAATCTCTCTTGTCCCGAGATTAACATCTCAAGTCACCGAGCTAAAA 291
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 223 CTCCCAAACGACGCAATCTCTCTCGTCCCGAGATTAACATCTGAAGTCACCGAGCTAAAA 282
Query 292 CGGCGACTCGCGACGGCGGAGGAACAAGTCCGTCAGATGAAATCTCGGCGCGTGGAAGAT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 CGGCGACTCGCGACGGCGGAGGAACAAGTCCGTCAGATGAAATCTCGGCGCGTGGAAGAT 342
Query 352 TCGAAAGCTAACGCGCGTGTGGTCGAGATCTTTGCTAGTCATAGAAACGCTTGGCAAGAA 411
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 343 TCAAAAGCTAACGCGCGTGTGGTCGAGATCTTCGCTAGTCATAGAAACGCTTGGCAAGAA 402
Query 412 GAAGAGAAACGATTGTTGAATCGGATTCATGAAATTGAAGAAGAAAGAGAAGATTTCATG 471
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 403 GAAGAGAAACGATTGTTGAATCGGATTCATGAAATGGAAGAAGAAAGAGAAGATTTCATG 462
Query 472 AATAGGATTAGTGAATTGGAGAGGGAAGTGAGTGAGAGAGATGAAATGATTGGGTTTATG 531
|||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 463 AATAGGATTAGTGAGCTCGAGAGAGAAGTTAGTGAGAGAGATGAAATGATTGGGTTTATG 522
Query 532 TCTCGAAGAGAGATTGAGGAAGAAGAT---GATGATGATGGACAAGGAGATGAGTCCAGT 588
||||||||||||||||||||||||||| ||||| || ||| | ||||||||||| |||
Sbjct 523 TCTCGAAGAGAGATTGAGGAAGAAGATGAAGATGAAGAAGGAGATGGAGATGAGTCTAGT 582
Query 589 GAACGTTATGCTGTGGATCATCTCACTCTATCTTCATCACCATCA-CCTAAT--GCTT-- 643
|||||||||| ||||||||| |||||| |||| |||||||| | | || || | ||
Sbjct 583 GAACGTTATGGTGTGGATCACCTCACTGTATCATCATCACC-TAATGCTTATGGGATTAA 641
Query 644 ----A-TGGCAATTTTAATCCTTTCCAGGATTTACAATATGAATCTTTGGAATCTGTGTA 698
| | |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CCCAAGTTCCAATTTTACTCCTTTCCAGGATTTACAATATGAATCTTTGGAATCTGTGTA 701
Query 699 TCGTATGAAGCATTTTGTGCCAAGAAGGGAATCACCATGGAAGATTGATAGTGAAGGGAC 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TCGTATGAAGCATTTTGTGCCAAGAAGGGAATCACCATGGAAGATTGATAGTGAAGGGAC 761
Query 759 GGGTGTATCTGCGAAACTGAGGTTGCTTGAAGAGGAATTACTGAATCTTGAGAAAGTTTG 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GGGTGTATCTGCGAAACTGAGGTTGCTTGAAGAGGAATTACTGAATCTTGAGAAAGTTTG 821
Query 819 TCGTCCTAGTGACATATCGAAAGTTCCGTCTTTGTTGAAAAAACAGGCTAAGAGGTATCA 878
|||| |||||||| ||||||||||| |||||||||| |||||||| |||||||||||
Sbjct 822 TCGT---AGTGACATTTCGAAAGTTCCATCTTTGTTGAGGAAACAGGCGAAGAGGTATCA 878
Query 879 AGCTCTTTCAGGGAAGATCGATGATCTATGTAGAAGAATGCAGAGTAGTGATCCGTGCGA 938
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 879 AGCTCTTTCAGGGAAGATTGATGATCTATGTAGAAGAATGCAGAGTAGTGATCCGTGTGA 938
Query 939 TGCTACATTAGGACCTGAGTTCAGGACGCAAAGACAAAACGAGTTTCTGCTCGAGTGTTT 998
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 939 TGCTACATTAGGACCTGAGTTCAGGACGCAAAGACAAACCGAGTTTCTGCTCGAGTGTTT 998
Query 999 CAGACTTCAGCAACGGGCATCGGAGACAGGGCAGAAGCTAGTTTCATTGCAGACGGAAAT 1058
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 999 CAGGCTTCAGCAGCGGGCATCAGAGACAGGGCAGAAGCTAGTTTCATTGCAGACGGAAAT 1058
Query 1059 CACCAGGAGTAATCAAGGAGATCAGTTAAGCCAAGCCAAGATGAACACAGGGAGGTCATT 1118
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 CACGAGGAGTAATCAAGGAGATCAGTTAAGCCAAGCCAAGATGAACACAGGGAGGTCATT 1118
Query 1119 GGATTTGATCAAGAACAACTTGAAAGAAGTTCAGAGAAACTTGGAGATTTGGCTGGCTAG 1178
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 GGATTTGATTAAGAACAACTTGAAAGAAGTTCAGAGAAACTTGGAGATTTGGCTGGCTAG 1178
Query 1179 AATTATTGGAGATCTTGAAGGTATACTTGCTAGAGACGGGGCTTCACGTGTAAGAGAATT 1238
|| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GATCATTGGAGATCTCGAAGGCATACTTGCTAGAGACGGGGCTTCACGTGTAAGAGAATT 1238
Query 1239 CTACGTTGCTCGATACCCTTTTGTTCAGTAGAATCAGAAATCTCTCTATCACTTAAGACT 1298
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1239 CTACGTTGCTCGATACCCTTTTGTTCAGTAGAATCAGAAATCTCTCTATCTCTTAAGGCT 1298
Query 1299 AACTCGCCAttttttttttGTTTCTGTTGCCTTATGTATGTGTGTCTGTAACTGTG-TTA 1357
||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |||
Sbjct 1299 AACTCGCCATTTTTTTT--GTTTCTTTTGCCTTGTGTATGTGTGTCTGTAACTGTGGTTA 1356
Query 1358 ACCTGCTAAAGATCAGTGTAGAAGTCTAGGTTTGATCTGATAAATAAGCAAGTTGTGTTA 1417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1357 ACCTGCTAAAGATCAGTGTAGAAGTCTAGGTTTGATCTGATAAATAAACAAGTTGTGTTA 1416
Query 1418 TATTATTAATCATTCC 1433
||||||||||||||||
Sbjct 1417 TATTATTAATCATTCC 1432
Score = 69.4 bits (37), Expect = 7e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 AAAAAATGTCCTACCGTTTTTGCTGATAGATTGAAAA 37
|||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAATGTCCTACCGTTTTTGCTGATAGATTGAAAA 37
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5