BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45910.1
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897399 jgi|Araly1|897399|Al_scaffold_0005_1365 529 1e-149
> Ahg897399 jgi|Araly1|897399|Al_scaffold_0005_1365
Length=570
Score = 529 bits (286), Expect = 1e-149
Identities = 455/533 (85%), Gaps = 26/533 (5%)
Strand=Plus/Plus
Query 68 CTGAAGAAATCCGCAGTCT-CACAACCTTTTTGTCATGGGAGAATCTTGGGAC-ATGTTT 125
|||||||| || ||||||| | |||| ||||| ||||||||||||||| | | | ||||
Sbjct 49 CTGAAGAATTCTGCAGTCTGC-CAACTTTTTTATCATGGGAGAATCTT-GCTCGAGGTTT 106
Query 126 ACTTCTTGATCCAAACGCGCACGTAGGATCTCTATGCTGCAGCCACCGCCGAG-TCCTCC 184
||| ||||||| ||| ||||||| |||||||||||||| ||||||||||||| || | |
Sbjct 107 ACTCCTTGATCGAAA--CGCACGTTGGATCTCTATGCTGTAGCCACCGCCGAGATCTTAC 164
Query 185 TCGT-CGA-AGAGT--T-TTTG-GGATCTTACTTGTCTTGGGGTATCTTGGA-TTTCGAT 237
| || | | || | | || | | | || | || | | | || | |||||||
Sbjct 165 TTGTCCCATTGA-TCATCTTCGTCCA-C-GACATATC-T-ACG--T-TTATACTTTCGAT 216
Query 238 CTCTTCGTCCAATCCAATGCACTTAATGGAGGAGTCATCGATATGCTTCGAAGATTCGGT 297
||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 217 CTCTTTGTCCAATCCAAGGCACTTGATGGAGGAGCCATCGATATGCTTCGAAGATCCGGT 276
Query 298 GTTGAGGTTCATATCTCACAACCGCCTACGAAGACCAAGAAGAGATCCAATGCAAACCGC 357
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 277 GTTGAGGTTCATATCTCACAACCGCCTACGAAGACCAACAAGAGATCCAATGCAAACCAC 336
Query 358 AAAGGTTTTCCCGATATTGAATTGGGGAAGGCTATGCATTCAAGGGCATTGGAGCGTAAT 417
||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 337 AAAGGTTTTCCCGATTTTGAATTGGGGAAGGCTATGCACTCATGGGCATTGGAGCGTAAT 396
Query 418 CCAAGCCCAATGCTCCTAATTTCCTCAGATTCTCGTCTTCACACCGACGTCTCACATATC 477
|||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |||
Sbjct 397 CCAAGCCCAATGCTCCTAATCTCCTCAGATTATCGTCTTCGCACCGACGTCTCACACATC 456
Query 478 ACGAGTCTC-GCATTTGAGATAATCTTGTTTCACACCAAAAAGGCTCCCAAAGATCTCAA 536
| |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 457 AAAAGTCTCAGG-TTTGAGATAATCTTATTTCACACCAAAAAGGCTCCCAAAGATCTCAA 515
Query 537 GGATTTA-GCAACAAAACGTGTACTATGGTTTGATGGTGTGTCAAAACTGACT 588
||| ||| | | ||||| || |||||||||| |||||||| || ||||||||
Sbjct 516 GGACTTATGTA-CAAAATATGCACTATGGTTTAATGGTGTGGCAGAACTGACT 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22092086031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5