BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45930.1
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1 649 0.0
Ahg484971 jgi|Araly1|484971|fgenesh2_kg.5__963__AT3G45930.1 560 3e-159
Ahg496101 jgi|Araly1|496101|fgenesh2_kg.8__1917__AT5G59690.1 392 1e-108
Ahg497532 jgi|Araly1|497532|fgenesh2_kg.781__1__AT5G59970.1 390 5e-108
Ahg496134 jgi|Araly1|496134|fgenesh2_kg.8__1950__AT5G59970.1 390 5e-108
> Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1
Length=501
Score = 649 bits (351), Expect = 0.0
Identities = 433/471 (92%), Gaps = 12/471 (3%)
Strand=Plus/Plus
Query 25 AATCTTCAAATCGAAAAATTT-CCGAAGAAAAATTC-AAG-TTCCTTTAGAAAATGTCAG 81
|||||||||||| ||| ||| ||| ||||||| || ||| |||| | ||||||||||||
Sbjct 1 AATCTTCAAATCCAAAGTTTTCCCG-AGAAAAA-TCAAAGTTTCC-TGAGAAAATGTCAG 57
Query 82 GTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTCATAGGAAGGTTC 141
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 58 GTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGAGGAGCCAAACGTCACAGGAAGGTTC 117
Query 142 TGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGGCTCGTAGAGGTG 201
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 118 TGAGAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTG 177
Query 202 GTGTTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTCTCAAGATCTTTT 261
| || || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 178 GAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTT 237
Query 262 TGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGGAAGACGGTGA 321
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 238 TGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCACGGAGGAAGACGGTGA 297
Query 322 CTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTACGGATTCGGCG 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 CTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTATGGATTCGGCG 357
Query 382 GCTAGGgtttttgattgttgttttt-tgtgtttctacgtttattagg-atgttaattttc 439
||||||||||| ||||||||||| | ||| |||||||||| |||| ||||||||||||
Sbjct 358 GCTAGGGTTTTCGATTGTTGTTTCTGTGTTTTTCTACGTTGCTTAGATATGTTAATTTTC 417
Query 440 aggatttgGTGTTAACTTC-GAAAAAATTAAAGA-ATTGAAGGTTGTTGTT 488
|| |||||||||||| ||| ||||||| ||| | || ||||| |||||||
Sbjct 418 AGAATTTGGTGTTAA-TTCCGAAAAAAACAAAAACAT-GAAGGATGTTGTT 466
> Ahg484971 jgi|Araly1|484971|fgenesh2_kg.5__963__AT3G45930.1
Length=458
Score = 560 bits (303), Expect = 3e-159
Identities = 344/363 (95%), Gaps = 5/363 (1%)
Strand=Plus/Plus
Query 50 AGAAAAATTC-AAG-TTCCTTTAGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTG 107
||||||| || ||| |||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 2 AGAAAAA-TCAAAGTTTCC-TGAGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGATTG 59
Query 108 GGCAAAGGTGGAGCCAAACGTCATAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACT 167
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 60 GGCAAAGGAGGAGCCAAACGTCACAGGAAGGTTCTAAGAGACAACATCCAAGGAATCACT 119
Query 168 AAACCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTGTTAAACGTATTAGTGGTCTGATC 227
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 120 AAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTGTCAAGCGTATTAGTGGTCTGATC 179
Query 228 TACGAAGAGACACGTGGCGTTCTCAAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTT 287
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 180 TACGAGGAGACACGTGGCGTACTCAAGATCTTTTTGGAGAATGTTATTCGTGACGCCGTT 239
Query 288 ACTTACACTGAGCACGCTCGGAGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTT 347
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 ACTTATACTGAGCACGCTCGGAGGAAGACGGTGACTGCTATGGATGTCGTTTATGCTCTT 299
Query 348 AAGAGACAAGGAAGAACTCTCTACGGATTCGGCGGCTAGGgtttttgattgttgttttt- 406
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 AAGAGACAAGGAAGAACTCTCTATGGATTCGGCGGCTAGGGTTTTTGATTGTTGTTTTTA 359
Query 407 tgt 409
|||
Sbjct 360 TGT 362
> Ahg496101 jgi|Araly1|496101|fgenesh2_kg.8__1917__AT5G59690.1
Length=428
Score = 392 bits (212), Expect = 1e-108
Identities = 278/311 (89%), Gaps = 0/311 (0%)
Strand=Plus/Plus
Query 72 AAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTCAT 131
|||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 62 AAAATGTCGGGCCGTGGAAAGGGAGGAAAAGGTTTGGGTAAAGGAGGAGCCAAGCGTCAC 121
Query 132 AGGAAGGTTCTGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGGCT 191
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 122 AGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGAAGATTGGCT 181
Query 192 CGTAGAGGTGGTGTTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTCTC 251
||||||||||| || || ||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 182 CGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCCTC 241
Query 252 AAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGG 311
||||||||| | ||||| || || ||||| || ||||||||||| ||||||||| |||||
Sbjct 242 AAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTTACTTACACCGAGCACGCTAGGAGG 301
Query 312 AAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTAC 371
||||| ||||| || |||||||||||||| ||||| ||||| |||||||| ||||| |||
Sbjct 302 AAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTTTAC 361
Query 372 GGATTCGGCGG 382
|||||||||||
Sbjct 362 GGATTCGGCGG 372
> Ahg497532 jgi|Araly1|497532|fgenesh2_kg.781__1__AT5G59970.1
Length=491
Score = 390 bits (211), Expect = 5e-108
Identities = 280/314 (89%), Gaps = 2/314 (1%)
Strand=Plus/Plus
Query 70 AGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTC 129
|||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || ||||
Sbjct 22 AGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGCAAAGGAGGAGCGAAGCGTC 81
Query 130 ATAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGG 189
| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 82 ACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGACTGG 141
Query 190 CTCGTAGAGGTGGTGTTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTC 249
||||||||||||| || || ||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 142 CTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCC 201
Query 250 TCAAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTC-GG 308
| ||||||||| | ||||| || || |||||||| ||||||||||| |||||||| | ||
Sbjct 202 TGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGC-CAGG 260
Query 309 AGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTC 368
|||||||| ||||| || |||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 261 AGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTT 320
Query 369 TACGGATTCGGCGG 382
||||||||||||||
Sbjct 321 TACGGATTCGGCGG 334
> Ahg496134 jgi|Araly1|496134|fgenesh2_kg.8__1950__AT5G59970.1
Length=491
Score = 390 bits (211), Expect = 5e-108
Identities = 280/314 (89%), Gaps = 2/314 (1%)
Strand=Plus/Plus
Query 70 AGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTC 129
|||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || ||||
Sbjct 22 AGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGCAAAGGAGGAGCGAAGCGTC 81
Query 130 ATAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGG 189
| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 82 ACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGACTGG 141
Query 190 CTCGTAGAGGTGGTGTTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTC 249
||||||||||||| || || ||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 142 CTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCC 201
Query 250 TCAAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTC-GG 308
| ||||||||| | ||||| || || |||||||| ||||||||||| |||||||| | ||
Sbjct 202 TGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGC-CAGG 260
Query 309 AGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTC 368
|||||||| ||||| || |||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 261 AGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTT 320
Query 369 TACGGATTCGGCGG 382
||||||||||||||
Sbjct 321 TACGGATTCGGCGG 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20489551293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5