BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45930.1 Length=561 Score E Sequences producing significant alignments: (Bits) Value Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1 649 0.0 Ahg484971 jgi|Araly1|484971|fgenesh2_kg.5__963__AT3G45930.1 560 3e-159 Ahg496101 jgi|Araly1|496101|fgenesh2_kg.8__1917__AT5G59690.1 392 1e-108 Ahg497532 jgi|Araly1|497532|fgenesh2_kg.781__1__AT5G59970.1 390 5e-108 Ahg496134 jgi|Araly1|496134|fgenesh2_kg.8__1950__AT5G59970.1 390 5e-108 > Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1 Length=501 Score = 649 bits (351), Expect = 0.0 Identities = 433/471 (92%), Gaps = 12/471 (3%) Strand=Plus/Plus Query 25 AATCTTCAAATCGAAAAATTT-CCGAAGAAAAATTC-AAG-TTCCTTTAGAAAATGTCAG 81 |||||||||||| ||| ||| ||| ||||||| || ||| |||| | |||||||||||| Sbjct 1 AATCTTCAAATCCAAAGTTTTCCCG-AGAAAAA-TCAAAGTTTCC-TGAGAAAATGTCAG 57 Query 82 GTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTCATAGGAAGGTTC 141 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 58 GTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGAGGAGCCAAACGTCACAGGAAGGTTC 117 Query 142 TGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGGCTCGTAGAGGTG 201 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 118 TGAGAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTG 177 Query 202 GTGTTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTCTCAAGATCTTTT 261 | || || ||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 178 GAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTT 237 Query 262 TGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGGAAGACGGTGA 321 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 238 TGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCACGGAGGAAGACGGTGA 297 Query 322 CTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTACGGATTCGGCG 381 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 298 CTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTATGGATTCGGCG 357 Query 382 GCTAGGgtttttgattgttgttttt-tgtgtttctacgtttattagg-atgttaattttc 439 ||||||||||| ||||||||||| | ||| |||||||||| |||| |||||||||||| Sbjct 358 GCTAGGGTTTTCGATTGTTGTTTCTGTGTTTTTCTACGTTGCTTAGATATGTTAATTTTC 417 Query 440 aggatttgGTGTTAACTTC-GAAAAAATTAAAGA-ATTGAAGGTTGTTGTT 488 || |||||||||||| ||| ||||||| ||| | || ||||| ||||||| Sbjct 418 AGAATTTGGTGTTAA-TTCCGAAAAAAACAAAAACAT-GAAGGATGTTGTT 466 > Ahg484971 jgi|Araly1|484971|fgenesh2_kg.5__963__AT3G45930.1 Length=458 Score = 560 bits (303), Expect = 3e-159 Identities = 344/363 (95%), Gaps = 5/363 (1%) Strand=Plus/Plus Query 50 AGAAAAATTC-AAG-TTCCTTTAGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTG 107 ||||||| || ||| |||| | |||||||||||||||||||||||||||||||||| ||| Sbjct 2 AGAAAAA-TCAAAGTTTCC-TGAGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGATTG 59 Query 108 GGCAAAGGTGGAGCCAAACGTCATAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACT 167 |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 60 GGCAAAGGAGGAGCCAAACGTCACAGGAAGGTTCTAAGAGACAACATCCAAGGAATCACT 119 Query 168 AAACCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTGTTAAACGTATTAGTGGTCTGATC 227 || ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 120 AAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTGTCAAGCGTATTAGTGGTCTGATC 179 Query 228 TACGAAGAGACACGTGGCGTTCTCAAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTT 287 ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 180 TACGAGGAGACACGTGGCGTACTCAAGATCTTTTTGGAGAATGTTATTCGTGACGCCGTT 239 Query 288 ACTTACACTGAGCACGCTCGGAGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTT 347 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 240 ACTTATACTGAGCACGCTCGGAGGAAGACGGTGACTGCTATGGATGTCGTTTATGCTCTT 299 Query 348 AAGAGACAAGGAAGAACTCTCTACGGATTCGGCGGCTAGGgtttttgattgttgttttt- 406 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 300 AAGAGACAAGGAAGAACTCTCTATGGATTCGGCGGCTAGGGTTTTTGATTGTTGTTTTTA 359 Query 407 tgt 409 ||| Sbjct 360 TGT 362 > Ahg496101 jgi|Araly1|496101|fgenesh2_kg.8__1917__AT5G59690.1 Length=428 Score = 392 bits (212), Expect = 1e-108 Identities = 278/311 (89%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 72 AAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTCAT 131 |||||||| || |||||||||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 62 AAAATGTCGGGCCGTGGAAAGGGAGGAAAAGGTTTGGGTAAAGGAGGAGCCAAGCGTCAC 121 Query 132 AGGAAGGTTCTGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGGCT 191 ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| Sbjct 122 AGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGAAGATTGGCT 181 Query 192 CGTAGAGGTGGTGTTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTCTC 251 ||||||||||| || || ||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 182 CGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCCTC 241 Query 252 AAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGG 311 ||||||||| | ||||| || || ||||| || ||||||||||| ||||||||| ||||| Sbjct 242 AAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTTACTTACACCGAGCACGCTAGGAGG 301 Query 312 AAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTAC 371 ||||| ||||| || |||||||||||||| ||||| ||||| |||||||| ||||| ||| Sbjct 302 AAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTTTAC 361 Query 372 GGATTCGGCGG 382 ||||||||||| Sbjct 362 GGATTCGGCGG 372 > Ahg497532 jgi|Araly1|497532|fgenesh2_kg.781__1__AT5G59970.1 Length=491 Score = 390 bits (211), Expect = 5e-108 Identities = 280/314 (89%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 70 AGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTC 129 |||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || |||| Sbjct 22 AGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGCAAAGGAGGAGCGAAGCGTC 81 Query 130 ATAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGG 189 | ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| Sbjct 82 ACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGACTGG 141 Query 190 CTCGTAGAGGTGGTGTTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTC 249 ||||||||||||| || || ||||| ||||||||||||||||| ||||| |||||||| | Sbjct 142 CTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCC 201 Query 250 TCAAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTC-GG 308 | ||||||||| | ||||| || || |||||||| ||||||||||| |||||||| | || Sbjct 202 TGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGC-CAGG 260 Query 309 AGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTC 368 |||||||| ||||| || |||||||||||||| ||||| ||||| |||||||| ||||| Sbjct 261 AGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTT 320 Query 369 TACGGATTCGGCGG 382 |||||||||||||| Sbjct 321 TACGGATTCGGCGG 334 > Ahg496134 jgi|Araly1|496134|fgenesh2_kg.8__1950__AT5G59970.1 Length=491 Score = 390 bits (211), Expect = 5e-108 Identities = 280/314 (89%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 70 AGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTC 129 |||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || |||| Sbjct 22 AGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGCAAAGGAGGAGCGAAGCGTC 81 Query 130 ATAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGG 189 | ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| Sbjct 82 ACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGACTGG 141 Query 190 CTCGTAGAGGTGGTGTTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTC 249 ||||||||||||| || || ||||| ||||||||||||||||| ||||| |||||||| | Sbjct 142 CTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCC 201 Query 250 TCAAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTC-GG 308 | ||||||||| | ||||| || || |||||||| ||||||||||| |||||||| | || Sbjct 202 TGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGC-CAGG 260 Query 309 AGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTC 368 |||||||| ||||| || |||||||||||||| ||||| ||||| |||||||| ||||| Sbjct 261 AGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTT 320 Query 369 TACGGATTCGGCGG 382 |||||||||||||| Sbjct 321 TACGGATTCGGCGG 334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20489551293 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5