BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45940.1
Length=2607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484972 jgi|Araly1|484972|fgenesh2_kg.5__964__AT3G45940.1 3338 0.0
Ahg897024 jgi|Araly1|897024|Al_scaffold_0005_990 1242 0.0
Ahg926139 jgi|Araly1|926139|scaffold_201700.1 1044 0.0
> Ahg484972 jgi|Araly1|484972|fgenesh2_kg.5__964__AT3G45940.1
Length=2508
Score = 3338 bits (1807), Expect = 0.0
Identities = 2123/2275 (93%), Gaps = 23/2275 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTGTCTTTCTCTTCTTGTTGCTATTATCCTCTGCTTCTCATCTCTCCAGTGT 60
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGCTTCTTCTCTTTCTCTTCTTGTGGCTATTATCCTCTGCTTCTCATCTCTCCGGTGT 60
Query 61 TCCAACGCCATCGGCAAAGGCTACCGTCTGATCTCCATGGAGAAGTCTCCCGATGATGGC 120
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 61 TCCAACGCCATCGGCAAAGGCTACCGTCTAATCTCCATTGAGAAGTCTCCCGATGATGGT 120
Query 121 AGCTTCATTGGCTATCTCCAAGTGAAGCAGAGTAACAAAATCTACGGCTCTGATATAACC 180
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GGCTTCATTGGCTTTCTCCAAGTGAAGCAGAGTAACAAAATCTATGGCTCTGATATAACC 180
Query 181 ATCCTTCGACTCTTCATCAA-CTACAG-AACGGATCATCGCCTTCGCGTTCACATTACAG 238
|||||||||||||||||||| | || | |||||||||||||||||| |||||||| ||||
Sbjct 181 ATCCTTCGACTCTTCATCAAGC-AC-GAAACGGATCATCGCCTTCGTGTTCACATAACAG 238
Query 239 ACGCAAAGAAACAACGATGGGAAGTTCCGTACAATCTCCTCCGCCGGGAACAACCACCGA 298
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 239 ACGCAAAGAGACAACGATGGGAAGTTCCGTACAATCTCCTCCGCCGAGAACAACCACCGA 298
Query 299 -ATGTAATCGGAAAATCAAGAAAATCTCCGGTTACGGTACAAGAAATATCCGGACCGGAG 357
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 GA-GTAATCGGAAAATCAAGAAAATCTCCGGTTACGGTACAGGAAATATCCGGACCGGAG 357
Query 358 CTGATTTTAATCTTCACCGTAGATCCTTTCAGCTTCGCCGTAAGAAGAAGATCCAACGGC 417
|||| || | ||||||| ||||||||||||||||||||| ||||||||||||||| ||
Sbjct 358 TTGATATTGAGCTTCACCACAGATCCTTTCAGCTTCGCCGTGAGAAGAAGATCCAACCGC 417
Query 418 GAGACGATTTTCAACACTAGTAGCTCCGATGAGTCA-TTCGGAGAGATGGTGTTCAAGGA 476
|||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 418 GAGACGATTTTCAACACTAGTAGCTCTGATGAG-AACTTCGGAGAGATGGTGTTCAAGGA 476
Query 477 CCAGTACCTCGAGATCTCAACTTCTTTACCTAAAGACGCGTCTCTATACGGATTTGGTGA 536
|||||||| |||||||||||||| |||| |||||| ||||||| || |||||||||||
Sbjct 477 TCAGTACCTTGAGATCTCAACTTCACTACCCAAAGACTCGTCTCTGTATGGATTTGGTGA 536
Query 537 AAACTCTCAAGCCAATGGAATCAAACTGGTTCCTAATGAGCCATACACTCTCTTCACTGA 596
|||||| ||| ||||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct 537 AAACTCACAACCCAATGGAATCAAGCTTGTTCCTAATGAGCCTTACACTCTTTTCACTGA 596
Query 597 AGACGTCTCGGCGTTTAATCTCAACACTGATCTTTACGGGTCGCATCCGGTTTACATGGA 656
|||||||||||||||||| |||||||| |||||||||||||| || || |||||||||||
Sbjct 597 AGACGTCTCGGCGTTTAAACTCAACACCGATCTTTACGGGTCACACCCTGTTTACATGGA 656
Query 657 TTTGAGAAACGTTAGTGGTAAAGCCTATGCACACTCTGTTCTGCTTCTTAACAGTCATGG 716
||||||||||||||| |||||| |||| |||||||||||||||||||| |||||| ||||
Sbjct 657 TTTGAGAAACGTTAGAGGTAAATCCTACGCACACTCTGTTCTGCTTCTCAACAGTAATGG 716
Query 717 TATGGATGTGTTTTACAGAGGCGATTCCTTGACGTACAAGGTAATTGGAGGTGTTTTTGA 776
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 717 TATGGATGTGCTTTACAGAGGCGGTTCCTTGACGTACAAGGTAATTGGAGGTGTTTTCGA 776
Query 777 TTTCTATTTCTTCGCTGGACCGTCGCCTCTTAATGTCGTTGATCAATACACTTCGTTAAT 836
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 777 TTTCTATTTCTTTGCTGGACCGTCGCCTCTCAATGTCGTTGATCAATACACTTCGTTAAT 836
Query 837 AGGACGGCCAGCGCCAATGCCGTACTGGTCTCTAGGGTTTCACCAATGTAGATGGGGGTA 896
||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 837 CGGAAGGCCAGCACCAATGCCGTACTGGTCTCTAGGGTTTCATCAATGTAGATGGGGATA 896
Query 897 CCGTAATGTATCAGTTGTTAAAGATGTGGTGGATAATTACCAAAAGGCTAAGATCCCTCT 956
|||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||||
Sbjct 897 CCGTAATGTATCAGTTCTTGAAGAAGTGGTGGATAATTATCAAAAGGCTAAGATCCCTCT 956
Query 957 TGATGTGATTTGGAACGATGCTGATTACATGGATGGTTACAAGGACTTCACTTTGGATCT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 TGATGTGATTTGGAACGATGCTGATTACATGGATGGTTACAAGGACTTCACATTGGATCT 1016
Query 1017 TGTGAATTTTCCTCATGCTAAGCTATTGAG-TTTCTTGGATAGAATCCATAAGATGGGAA 1075
|||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 1017 TGTGAACTTTCCTCATGCTAAGCTATTG-GCTTTCTTGGATAGAATCCACAAGATGGGAA 1075
Query 1076 TGAAGTATGTTGTGATAAAAGATCCTGGTATTGGTGTCAACGCGAGTTACGGTGTATACC 1135
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1076 TGAAGTATGTTGTGATAAATGATCCTGGTATTGGTGTCAACGCGAGCTACGGTGTTTACC 1135
Query 1136 AAAGAGGCATGGCTAGTGATGTGTTCATTAAATATGAAGGAAAGCCTTTCTTGGCTCAAG 1195
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AAAGAGGCATGGCTAATGATGTGTTCATTAAATATGAAGGAAAGCCTTTCTTGGCTCAAA 1195
Query 1196 TGTGGCCTGGTCCAGTTTACTTCCCTGATTTCCTTAACCCGAAAACGGTTTCTTGGTGGG 1255
||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 1196 TGTGGCCTGGTCCGGTTTACTTCCCTGATTTCCTCAACCCAAAAACGGTGTCTTGGTGGG 1255
Query 1256 GCGATGAAATTCGACGTTTCCATGAGTTAGTACCCATTGATGGTCTTTGGATCGACATGA 1315
| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1256 GTGATGAAATCCGACGTTTCCATGAATTAGTCCCCATTGATGGTCTTTGGATCGACATGA 1315
Query 1316 ATGAGATCAATGCTACTGGACACAAAGCTTCTCTAGGGTTCAAGACTATTCCCACAAGTG 1375
|||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||
Sbjct 1316 ATGAGATCAATGCTACTGGAAACAAAGCTCCTCTTGGATTCAAGACTATTCCCACAAGTG 1375
Query 1376 CTTATCACTACAATGGTGTTCGTGAGTACGACGCTCACAGCATCTACGGGTTCTCTGAGG 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CTTATCACTACAATGGTGTTCGTGAGTACGACGCTCACAGCATCTACGGGTTCTCTGAGG 1435
Query 1436 CCATAGCGACCCACAAGGCCTTGCTTGCTGTCCAAGGCAAACGTCCATTTATATTGTCAC 1495
|||| ||||||| |||||||| |||| |||||||||||||||||| || ||||||||||
Sbjct 1436 CCATCTCGACCCATAAGGCCTTACTTGATGTCCAAGGCAAACGTCCCTTCATATTGTCAC 1495
Query 1496 GGTCCACTTTTGTTGGTTCAGGTCAATATGCTGCTCACTGGACTGGAGATAACCAAGGAA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1496 GGTCCACTTTTGTTGGTTCAGGTCAATATGCTGCTCACTGGACTGGAGATAACCAGGGAA 1555
Query 1556 CATGGCAGAGCTTGCAAGTATCTATCTCAACGATGTTGAATTTTGGAATTTTTGGAGTTC 1615
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1556 CATGGCAGAGCTTGCAAGTATCTATCTCAACGATGTTGAACTTCGGAATTTTTGGAGTTC 1615
Query 1616 CTATGGTTGGTTCAGATATATGTGGATTCTTTCCTCCAACACCAGAAGAACTCTGCAACC 1675
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 CTATGGTTGGTTCAGACATATGTGGATTCTTTCCTCCAACACCAGAAGAACTCTGCAACC 1675
Query 1676 GTTGGATTGAAGTTGGTGCGTTTTACCCCTTTTCAAGAGATCACGCTGATTACTACGCTC 1735
||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || |
Sbjct 1676 GTTGGATTGAAGTCGGTGCGTTTTACCCCTTTTCAAGAGATCATGCCGATTACTATGCGC 1735
Query 1736 CAAGAAAAGAGCTTTACCAATGGGGAACAGTAGCAGAGTCAGCTCGTAACGCTCTTGGGA 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 CAAGAAAAGAGCTTTACCAATGGGGAACAGTAGCAGAGTCAGCTCGTAACGCTCTTGGGA 1795
Query 1796 TGAGATACAAACTCCTTCCTTTTCTCTACACTCTCAACTACGAAGCCCATATGAGTGGTG 1855
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1796 TGAGATACAAACTCCTTCCTTTTCTCTACACTCTCAACTACGAAGCCCATATGACCGGTG 1855
Query 1856 CACCAATCGCTAGACCGCTCTTCTTCTCTTTCCCTGAGTT-CACTGAATGCTACGGTTTG 1914
|||| ||||||||||||||||||||||| |||||||| || ||| || ||||||||||||
Sbjct 1856 CACCCATCGCTAGACCGCTCTTCTTCTCATTCCCTGA-TTACACCGAGTGCTACGGTTTG 1914
Query 1915 AGCAAACAGTTCTTGCTCGGAAGCAGCTTAATGATATCGCCGGTTCTTGAACAAGGTAAA 1974
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1915 AGCAAACAGTTCTTGCTCGGAAGCAGCTTAATGATATCACCAGTTCTTGAACAAGGTAAA 1974
Query 1975 ACCCAAGTTGAAGCACTGTTCCCACCAGGTTCTTGGTACCACATGTTTGACATGACTCAG 2034
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1975 ACCCAAGTTGAAGCTCTGTTCCCACCAGGTTCTTGGTACCACATTTTTGACATGACTCAG 2034
Query 2035 GTCGTTGTTTCAAAGAACGGGAGGCTTTTCACCCTCCCCGCTCCGTTTAACGTTGTGAAC 2094
||||||||||| |||||||||| || | || ||||| |||||||| ||||||||||||
Sbjct 2035 GTCGTTGTTTCCAAGAACGGGAAGCGCGTGACTCTCCCAGCTCCGTTGAACGTTGTGAAC 2094
Query 2095 GTGCATCTTTACCAGAACGCGATACTACCCATGCAACAAG-TCGTC-G--C-T---TT-C 2145
|||||||||||||||||| ||||| |||| |||||||||| ||||| | | | || |
Sbjct 2095 GTGCATCTTTACCAGAACACGATATTACCAATGCAACAAGGTCGTCTGGTCGTCACTTTC 2154
Query 2146 CCGGCGGGAGCATCAGAGGGATACGCCTCCGGGAAACTCTTTCTTGATGATGATGAGCTT 2205
||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| |||
Sbjct 2155 CCGGCTAGAGCATCAGAGGGATACGCCACCGGGAAACTCTTTCTTGACGATGATGAACTT 2214
Query 2206 CCGGAGATGAAACTTGGAAACGGGA-AGTCAACGTACATTGACTTCTACGCATCG 2259
|| ||||||||| |||||||||| | ||||||| ||| |||||||||||||||||
Sbjct 2215 CCAGAGATGAAAATTGGAAACGG-ACAGTCAACATACGTTGACTTCTACGCATCG 2268
Score = 246 bits (133), Expect = 5e-64
Identities = 147/154 (95%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 2416 ACCAAGACGATTGAGGTAAGCTCCAAGGAGCAGATGTATGTGGTGGGTTCTGAAGATGAA 2475
||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||| ||
Sbjct 2344 ACCAAGAGGATTGAGGTAAGCTCCAAGGATCAGAAGTATGTGGTGGGTTCGGAAGATAAA 2403
Query 2476 GGAGAGAGTAAAAGCTTCATGGTTGAGCTTAAGGGCCTTGAGATGCTAGTGGGTAAGGAC 2535
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2404 GGAGAGAGTAAGAGCTTCATGGTTGAGCTTAAGGGCCTTGAGATACTAGTGGGTAAGGAC 2463
Query 2536 TTCAACATATCTTGGAAAATGGCTAGTACTAATG 2569
||||||||||||||||||||||||||||||||||
Sbjct 2464 TTCAACATATCTTGGAAAATGGCTAGTACTAATG 2497
> Ahg897024 jgi|Araly1|897024|Al_scaffold_0005_990
Length=2241
Score = 1242 bits (672), Expect = 0.0
Identities = 771/819 (94%), Gaps = 6/819 (1%)
Strand=Plus/Plus
Query 1319 AGATCAATGCTACTGGACACAAAGCTTCTCTAGGGTTCAAGACTATTCCCACAAGTGCTT 1378
||||||||||||||||| |||||||| |||| || |||||||||||||||||||||||||
Sbjct 977 AGATCAATGCTACTGGAAACAAAGCTCCTCTTGGATTCAAGACTATTCCCACAAGTGCTT 1036
Query 1379 ATCACTACAATGGTGTTCGTGAGTACGACGCTCACAGCATCTACGGGTTCTCTGAGGCCA 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATCACTACAATGGTGTTCGTGAGTACGACGCTCACAGCATCTACGGGTTCTCTGAGGCCA 1096
Query 1439 TAGCGACCCACAAGGCCTTGCTTGCTGTCCAAGGCAAACGTCCATTTATATTGTCACGGT 1498
| ||||| | |||||||| |||| |||||||||||||||||| || |||||||||||||
Sbjct 1097 TCTCGACCAATAAGGCCTTACTTGATGTCCAAGGCAAACGTCCCTTCATATTGTCACGGT 1156
Query 1499 CCACTTTTGTTGGTTCAGGTCAATATGCTGCTCACTGGACTGGAGATAACCAAGGAACAT 1558
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1157 CCACTTTTGTTGGTTCAGGTCAATATGCTGCTCACTGGACTGGAGATAACCAGGGAACAT 1216
Query 1559 GGCAGAGCTTGCAAGTATCTATCTCAACGATGTTGAATTTTGGAATTTTTGGAGTTCCTA 1618
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1217 GGCAGAGCTTGCAAGTATCTATCTCAACGATGTTGAACTTCGGAATTTTTGGAGTTCCTA 1276
Query 1619 TGGTTGGTTCAGATATATGTGGATTCTTTCCTCCAACACCAGAAGAACTCTGCAACCGTT 1678
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 TGGTTGGTTCAGACATATGTGGATTCTTTCCTCCAACACCAGAAGAACTCTGCAACCGTT 1336
Query 1679 GGATTGAAGTTGGTGCGTTTTACCCCTTTTCAAGAGATCACGCTGATTACTACGCTCCAA 1738
|||||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||
Sbjct 1337 GGATTGAAGTCGGTGCGTTTTACCCCTTTTCAAGAGATCATGCCGATTACTATGCGCCAA 1396
Query 1739 GAAAAGAGCTTTACCAATGGGGAACAGTAGCAGAGTCAGCTCGTAACGCTCTTGGGATGA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 GAAAAGAGCTTTACCAATGGGGAACAGTAGCAGAGTCAGCTCGTAACGCTCTTGGGATGA 1456
Query 1799 GATACAAACTCCTTCCTTTTCTCTACACTCTCAACTACGAAGCCCATATGA-GTGGTGCA 1857
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1457 GATACAAACTCCTTCCTTTTCTCTACACTCTCAACTACGAAGCCCATATGACG-GGTGCA 1515
Query 1858 CCAATCGCTAGACCGCTCTTCTTCTCTTTCCCTGAGTT-CACTGAATGCTACGGTTTGAG 1916
||||| ||||||||||||||||||||||||||||| || ||| || ||||||||||||||
Sbjct 1516 CCAATTGCTAGACCGCTCTTCTTCTCTTTCCCTGA-TTACACCGAGTGCTACGGTTTGAG 1574
Query 1917 CAAACAGTTCTTGCTCGGAAGCAGCTTAATGATATCGCCGGTTCTTGAACAAGGTAAAAC 1976
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1575 CAAACAGTTCTTGCTCGGAAGCAGCTTAATGATATCACCAGTTCTTGAACAAGGTAAAAC 1634
Query 1977 CCAAGTTGAAGCACTGTTCCCACCAGGTTCTTGGTACCACATGTTTGACATGACTCAGGT 2036
|||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1635 CCAAGTTGAAGCTCTGTTCCCATCAGGTTCTTGGTACCACATTTTTGACATGACTCAGGT 1694
Query 2037 CGTTGT-TTCAAAGAACGGGAGGCTTTTCACCCTCCCCGCTCCGTTTAACGTTGTGAACG 2095
|||| | ||| |||||||||| || | || |||| |||||||| |||||||||||||
Sbjct 1695 CGTT-TATTCCAAGAACGGGAAGCGCGTGACTCTCCTAGCTCCGTTGAACGTTGTGAACG 1753
Query 2096 TGCATCTTTACCAGAACGCGATACTACCCATGCAACAAG 2134
||||||||||||||||| ||||| |||| ||||||||||
Sbjct 1754 TGCATCTTTACCAGAACACGATATTACCGATGCAACAAG 1792
Score = 1232 bits (667), Expect = 0.0
Identities = 786/844 (93%), Gaps = 5/844 (1%)
Strand=Plus/Plus
Query 478 CAGTACCTCGAGATCTCAACTTCTTTACCTAAAGACGCGTCTCTATACGGATTTGGTGAA 537
|||||||| |||||||||||||| |||| |||||| ||||||| || ||||||||||||
Sbjct 4 CAGTACCTTGAGATCTCAACTTCACTACCCAAAGACTCGTCTCTGTATGGATTTGGTGAA 63
Query 538 AACTCTCAAGCCAATGGAATCAAACTGGTTCCTAATGAGCCATACACTCTCTTCACTGAA 597
||||| ||| ||||||||||||| || |||||||||||||| |||||||| |||||||||
Sbjct 64 AACTCACAACCCAATGGAATCAAGCTTGTTCCTAATGAGCCTTACACTCTTTTCACTGAA 123
Query 598 GACGTCTCGGCGTTTAATCTCAACACTGATCTTTACGGGTCGCATCCGGTTTACATGGAT 657
||||||||||||||||| |||||||| |||||||||||||| || || ||||||||||||
Sbjct 124 GACGTCTCGGCGTTTAAACTCAACACCGATCTTTACGGGTCACACCCTGTTTACATGGAT 183
Query 658 TTGAGAAACGTTAGTGGTAAAGCCTATGCACACTCTGTTCTGCTTCTTAACAGTCATGGT 717
|||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||
Sbjct 184 TTGAGAAACGTTAGAGGTAAATCCTACGCACACTCTGTTCTGCTTCTCAACAGTAATGGT 243
Query 718 ATGGATGTGTTTTACAGAGGCGATTCCTTGACGTACAAGGTAATTGGAGGTGTTTTTGAT 777
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 244 ATGGATGTGCTTTACAGAGGCGGTTCCTTGACGTACAAGGTAATTGGAGGTGTTTTCGAT 303
Query 778 TTCTATTTCTTCGCTGGACCGTCGCCTCTTAATGTCGTTGATCAATACACTTCGTTAATA 837
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 304 TTCTATTTCTTTGCTGGACCGTCGCCTCTCAATGTCGTTGATCAATACACTTCGTTAATC 363
Query 838 GGACGGCCAGCGCCAATGCCGTACTGGTCTCTAGGGTTTCACCAATGTAGATGGGGGTAC 897
||| ||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 364 GGAAGGCCAGCACCAATGCCGTACTGGTCTCTA---TTTCATCAATGTAGATGGGGATAC 420
Query 898 CGTAATGTATCAGTTGTTAAAGATGTGGTGGATAATTACCAAAAGGCTAAGATCCCTCTT 957
||||||||||||||| || |||| |||||||||||||| |||||||||||||||||||||
Sbjct 421 CGTAATGTATCAGTTCTTGAAGAAGTGGTGGATAATTATCAAAAGGCTAAGATCCCTCTT 480
Query 958 GATGTGATTTGGAACGATGCTGATTACATGGATGGTTACAAGGACTTCACTTTGGATCTT 1017
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 GATGTGATTTGGAACGATGCTGATTACATGGATGGTTACAAGGACTTCACATTGGATCTT 540
Query 1018 GTGAATTTTCCTCATGCTAAGCTATTGAG-TTTCTTGGATAGAATCCATAAGATGGGAAT 1076
||||| ||||||||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 541 GTGAACTTTCCTCATGCTAAGCTATTG-GCTTTCTTGGATAGAATCCACAAGATGGGAAT 599
Query 1077 GAAGTATGTTGTGATAAAAGATCCTGGTATTGGTGTCAACGCGAGTTACGGTGTATACCA 1136
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 600 GAAGTATGTTGTGATAAATGATCCTGGTATTGGTGTCAACGCGAGCTACGGTGTTTACCA 659
Query 1137 AAGAGGCATGGCTAGTGATGTGTTCATTAAATATGAAGGAAAGCCTTTCTTGGCTCAAGT 1196
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 AAGAGGCATGGCTAATGATGTGTTCATTAAATATGAAGGAAAGCCTTTCTTGGCTCAAAT 719
Query 1197 GTGGCCTGGTCCAGTTTACTTCCCTGATTTCCTTAACCCGAAAACGGTTTCTTGGTGGGG 1256
|||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 720 GTGGCCTGGTCCGGTTTACTTCCCTGATTTCCTCAACCCAAAAACGGTGTCTTGGTGGGG 779
Query 1257 CGATGAAATTCGACGTTTCCATGAGTTAGTACCCATTGATGGTCTTTGGATCGACATGAA 1316
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 780 TGATGAAATCCGACGTTTCCATGAATTAGTCCCCATTGATGGTCTTTGGATCGACATGAA 839
Query 1317 TGAG 1320
||||
Sbjct 840 TGAG 843
Score = 396 bits (214), Expect = 5e-109
Identities = 251/269 (93%), Gaps = 1/269 (0%)
Strand=Plus/Plus
Query 2302 GGTCAG-TTTGCGTTGAGCCAAGGTTTGGTGATTGAGAAAGTGATTGTTTTGGGACTTAA 2360
||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1962 GGTAAGTTTTGCGTTGAGACAAGGTTTGGTGATTGAGAGAGTGATTGTTTTGGGACTTGA 2021
Query 2361 AGGAACATGGAAAGTTTCTGAAATACTTCTTAATGGAAGTTCAATCTCCAATGAGACCAA 2420
||||||| || ||||||||||||||| ||||||||||||| |||||||||| ||||||||
Sbjct 2022 AGGAACAGGGCAAGTTTCTGAAATACATCTTAATGGAAGTCCAATCTCCAACGAGACCAA 2081
Query 2421 GACGATTGAGGTAAGCTCCAAGGAGCAGATGTATGTGGTGGGTTCTGAAGATGAAGGAGA 2480
|| |||||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||
Sbjct 2082 GAGGATTGAGGTAAGCTCCAAGGAGCAGAAGTATGTGGTGGTTTCGGAAGATAAAGGAGA 2141
Query 2481 GAGTAAAAGCTTCATGGTTGAGCTTAAGGGCCTTGAGATGCTAGTGGGTAAGGACTTCAA 2540
|||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2142 GAGTAAGAGCTTCATGGTTGAGCTTAAGGGCCTTGAGATACTAGTGGATAAGGACTTCAA 2201
Query 2541 CATATCTTGGAAAATGGCTAGTACTAATG 2569
|||||||||||||||||||||||||||||
Sbjct 2202 CATATCTTGGAAAATGGCTAGTACTAATG 2230
> Ahg926139 jgi|Araly1|926139|scaffold_201700.1
Length=2791
Score = 1044 bits (565), Expect = 0.0
Identities = 1100/1346 (82%), Gaps = 86/1346 (6%)
Strand=Plus/Plus
Query 12 TCTTTCTCTTCTTGTTGCTATT-ATCCTCTGCTTCTCATCTC-TCCAGTGTTCCAACGCC 69
|||||||||| || | ||| || |||||||| |||||| | | ||| | ||||| ||
Sbjct 56 TCTTTCTCTTTTTCTAGCT-TTAATCCTCTGTTTCTCA-CCCACCCAATCCTCCAAAACC 113
Query 70 ATCGGCAAAGGCTACCGTCTGATCTCCAT-GGAGAAGTCTCCCGATGATGGCAGCTTCAT 128
|||||||||||||||||| |||||||||| | |||| ||| || | ||||| |||||||
Sbjct 114 ATCGGCAAAGGCTACCGTTTGATCTCCATCGAAGAA-TCT-CC-A-GATGGTGGCTTCAT 169
Query 129 TGGCTATCTCCAAGTGAAGC-AGAGTAACAAAATCTACGGCTCTGATATAACCATC-CTT 186
||| || |||||||| || | | || ||||||||||||||||||||||| |||| | |||
Sbjct 170 TGGTTACCTCCAAGTCAAACAAAAG-AACAAAATCTACGGCTCTGATATCACCA-CTCTT 227
Query 187 CGACTCTTCATCAA-CTACAG-AACGGA-TCATCGCCTTCGCGTTCACATTACAGACGC- 242
|| |||||| |||| | || | ||| || ||| || ||||| |||||||| ||||||||
Sbjct 228 CGTCTCTTCGTCAAGC-AC-GAAACAGATTCA-CGTCTTCGTGTTCACATCACAGACGCG 284
Query 243 AAAGAAACAACGATGGGAAGTTCCGTACAATCTCCTCCGC-CGGGAAC-A--ACCAC--- 295
||| ||||||||||||||||||| ||||||||||||| | || |||| | |||||
Sbjct 285 AAA-CAACAACGATGGGAAGTTCCATACAATCTCCTCC-CACGAGAACAACCACCACAAG 342
Query 296 -C-G-AATGTAATCGGAAAATCAAGAAAATCTCCGGTTACGGTACAAGAAATATCCGGA- 351
| | || || ||||||||||||||||||||||| | || || |||||||| ||||||
Sbjct 343 TCGGAAAAGTCATCGGAAAATCAAGAAAATCTCCAATCACAGTTCAAGAAATCTCCGGAT 402
Query 352 CCGGAGCTGAT-TTTAATCTTCACCGTAGATCCTTTCAGC-TTCGCCGTAAGAA-GAAGA 408
|| || || || || | | | ||| |||||| |||| | |||||||||| || | |||
Sbjct 403 CC-GAACTAATCTTCAGT-TACACAACAGATCCATTCA-CTTTCGCCGTAA-AACGTAGA 458
Query 409 TCCAACGGCGAGACGA-TTTTCAACA-CTAGTAGCTCCGATGAGTCATTCGGAGAGATGG 466
|| ||| || || | | ||||||| || |||| | || ||| |||| | | |
Sbjct 459 TCTAACCATGAAAC-ACTCTTCAACACCT-CAAGCT-C-ATTAGT-ATTC--A-A-A--- 506
Query 467 TGTTCAAGGACCAGTACCTCGAGATCTCAACTTCTTTACCTAAAGACGCGTCTCTATACG 526
| || | | ||||| |||||||||||||| ||||| ||||| || || || || |
Sbjct 507 -GATC----A--A-TACCTAGAGATCTCAACTTCGTTACCAAAAGAAGCATCACTCTATG 558
Query 527 GATTT-GGTGAAAACTCTCAAGCCAATGGAATCAAACTGGTTCCTAATGAGCCATACACT 585
| ||| ||||||||||| ||||| ||||| |||||||| || ||||| ||||| || |||
Sbjct 559 G-TTTAGGTGAAAACTCACAAGCTAATGGTATCAAACTCGTACCTAACGAGCCTTATACT 617
Query 586 CTCTT-CACTGAAGACGTCTCGGCGTTTAATCTCAACACTGATCTTTACGGGTCGCATCC 644
|| || ||||||||| || || || ||||||| |||||||||||||| || ||||||||
Sbjct 618 CT-TTACACTGAAGATGTTTCAGCCATTAATCTTAACACTGATCTTTATGGTTCGCATCC 676
Query 645 GGTTTACATGGATTTGAGAAACGTTAGTGGTAAAGCCTATGCACACT-CTGT-TCTGCTT 702
| | || |||||| | ||||||||| | |||||||| ||||| || | |||| | || ||
Sbjct 677 GATGTATATGGATCTAAGAAACGTTGGAGGTAAAGCTTATGCTCA-TGCTGTGT-TG-TT 733
Query 703 -CTTAACAGTCATGGTATGGATGTGTTT-TACAGAGGCGATTCCTTGACGTACAAGGTAA 760
||||| ||| ||||||||||||| ||| || ||||| ||||| |||||||| || || |
Sbjct 734 GCTTAATAGTAATGGTATGGATGT-TTTCTATAGAGGTGATTCGTTGACGTATAAAGTTA 792
Query 761 TTGGAGGTGTTTTTGATTTCTATTTCTTCGCTGGACCGTCGCCTCTT-AATGTCGTTGAT 819
| |||||||||||||| ||||||||| |||| ||||| ||||| || ||||| ||||||
Sbjct 793 TCGGAGGTGTTTTTGACTTCTATTTCATCGCCGGACCTTCGCC-GTTAAATGTTGTTGAT 851
Query 820 CAATACACTTC-GTTAATAGGACGGCCAGCGCCAATGCCGTACTGGTCTCTAGGGTTTCA 878
|| || || || |||||| ||| |||| || |||||||||||||||||| |||| |||||
Sbjct 852 CAGTATAC-TCAGTTAATCGGAAGGCCTGCTCCAATGCCGTACTGGTCTTTAGGATTTCA 910
Query 879 CCAATGTAGATGGGGGTACCGTAATGTATCAGTTGTTAAAGATGTGGTGGATAATTACCA 938
|||||||||||||| || | |||| ||||||||||| |||||||||||||||||||| |
Sbjct 911 TCAATGTAGATGGGGATATCATAATTTATCAGTTGTTGAAGATGTGGTGGATAATTACAA 970
Query 939 AAAGGCTAAGATCCCTCTTGATGTGATTTGGAACGATGCTGATTACATGGATGGTTACAA 998
|||||||||||| ||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 971 AAAGGCTAAGATTCCTCTTGATGTGATTTGGAACGATGATGATCACATGGATGGTCACAA 1030
Query 999 GGACTTCACTTTGGATCTTGTGAATTTTCCTCATGCTAAGCTATT-GAGTTTCTTGGATA 1057
|| ||||||||| ||| ||| || ||||| |||||||||||| | | |||||||| |
Sbjct 1031 AGATTTCACTTTGAATCCAGTGGCTTATCCTCGTGCTAAGCTATTGGCG-TTCTTGGACA 1089
Query 1058 GAATCCATAAGATGGGAATGAAGTATGTTGTGATAAAAGATCCTGGTATTGGTGTCAACG 1117
|||||| ||||| |||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 1090 AAATCCACAAGATTGGAATGAAGTATATTGTGATCAATGATCCTGGTATTGGTGTCAACG 1149
Query 1118 CGAGTTACGGTGTATACCAAAGAGGCATGGCTAG-TGATGTGTTCATTAAATATGAAGGA 1176
| || |||||| ||| ||||||| |||||| | ||||||||| ||||| |||||||||
Sbjct 1150 CTAGCTACGGTACATATCAAAGAGCCATGGC-CGCTGATGTGTTTATTAAGTATGAAGGA 1208
Query 1177 AAGCCTTTCTTGGCTCAAGTGTGGCCTGGTCCAGTTTACTTCCCTGATTTCCTTAACCCG 1236
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1209 AAGCCTTTCTTGGCTCAAGTGTGGCCTGGTCCGGTTTACTTCCCTGATTTCCTTAACCCG 1268
Query 1237 AAAACGGTTTCTTGGTGGGGCGATGAAATTCGA-CGTTTCCATGAGTTAGTACCC-ATTG 1294
|| ||||||||||||||||| |||||||| | | || |||||||| ||||| ||| ||||
Sbjct 1269 AAGACGGTTTCTTGGTGGGGAGATGAAAT-CAAACGCTTCCATGATTTAGT-CCCTATTG 1326
Query 1295 ATGGTCTTTGGATCGACATGAATGAG 1320
||||||| ||||| |||||||| |||
Sbjct 1327 ATGGTCTATGGATTGACATGAACGAG 1352
Score = 893 bits (483), Expect = 0.0
Identities = 710/821 (86%), Gaps = 10/821 (1%)
Strand=Plus/Plus
Query 1319 AGATCAATGCTACTGGACACAAAGCTTCTCTAGGGTTCAAGACTATTCCCACAAGTGCTT 1378
|||| |||||||||||| | |||| || | ||||||||||||||| |||||||||| |
Sbjct 1486 AGATTAATGCTACTGGAGTCGTAGCTCCTGTTGGGTTCAAGACTATTGCCACAAGTGC-T 1544
Query 1379 ATCAC--TACAATGGTGTTCGTGAGTACGACGCTCACAGCATCTACGGGTTCTCTGAGGC 1436
| ||| |||||||||||||| ||||| || |||||||| |||||||||||||||||| |
Sbjct 1545 A-CACATTACAATGGTGTTCGAGAGTATGATGCTCACAGTATCTACGGGTTCTCTGAGAC 1603
Query 1437 CATAGCGACCCACAAGGCCTTGCTTGCTGTCCAAGGCAAACGTCCATTTATATTGTCACG 1496
||| ||||| ||||||| ||| |||| |||| ||||||||||||| || || || || ||
Sbjct 1604 CATCGCGACTCACAAGGGCTTACTTGATGTCAAAGGCAAACGTCCCTTCATTTTATCCCG 1663
Query 1497 GTCCACTTTTGTTGGTTCAGGTCAATATGCTGCTCACTGGACTGGAGATAACCAAGGAAC 1556
||| ||||| || ||||| ||| ||||||| |||||||||||||||||||| ||||||||
Sbjct 1664 GTCTACTTTCGTGGGTTCGGGTAAATATGCCGCTCACTGGACTGGAGATAATCAAGGAAC 1723
Query 1557 ATGGCAGAGCTTGCAAGTATCTATCTCAACGATGTTGAATTTTGGAATTTTTGGAGTTCC 1616
|||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||
Sbjct 1724 ATGGCAGAGCTTGCAAGTGTCTATCTCAACCATGTTGAATTTTGGTATCTTTGGAGTTCC 1783
Query 1617 TATGGTTGGTTCAGATATATGTGGATTCTTTCCTCCAA-CACCAGAAGAACTCTGCAACC 1675
|||||||||||||| || |||||||||| ||| ||| || ||||||||||||||||||
Sbjct 1784 CATGGTTGGTTCAGACATTTGTGGATTCTACCCT-CAACCAACAGAAGAACTCTGCAACC 1842
Query 1676 GTTGGATTGAAGTTGGTGCGTTTTACCCCTTTTCAAGAGATCACGCTGATTACTACGCTC 1735
||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| | |
Sbjct 1843 GTTGGATCGAAGTTGGCGCGTTTTACCCGTTTTCAAGAGATCACGCCAATTACTACTCAC 1902
Query 1736 CAAGAAAAGAGCTTTACCAATGGGGA-ACAGTAGCAGAGTCAGCTCGTAACGCTCTTGGG 1794
||||| ||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||
Sbjct 1903 CAAGACAAGAGCTTTACCAAT-GGGACACAGTTGCAGACTCAGCTCGTAACGCTCTTGGT 1961
Query 1795 ATGAGATACAAACTCCTTCCTTTTCTCTACACTCTCAACTACGAAGCCCATATGAGTGGT 1854
|||||||| ||| |||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1962 ATGAGATATAAAATCCTTCCTTTCCTCTACACTCTCAACTACGAAGCCCATATGACCGGT 2021
Query 1855 GCACCAATCGCTAGACCGCTCTTCTTCTCTTTCCCTGAGTTCACTGAATGCTACGGTTTG 1914
||||| ||||||||||||||||||||||| |||||||| | ||| ||||| |||||
Sbjct 2022 GCACCCATCGCTAGACCGCTCTTCTTCTCATTCCCTGAATACACCGAATGTTACGGCAAC 2081
Query 1915 AGCAAACAGTTCTTGCTCGGAAGCAGCTTAATGATATCGCCGGTTCTTGAACAAGGTAAA 1974
|||| |||||||||||| |||||||||||||||||||| || ||||||||| |||| |||
Sbjct 2082 AGCAGACAGTTCTTGCTTGGAAGCAGCTTAATGATATCTCCCGTTCTTGAAAAAGGCAAA 2141
Query 1975 ACCCAAGTTGAAGCACTGTTCCCACCAGGTTCTTGGTACCACATGTTTGACATGACTCAG 2034
||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2142 ACCGAAGTAGAAGCATTGTTCCCACCAGGTTCTTGGTACCACATGTTCGACATGACTCAA 2201
Query 2035 GTCGTTGTTTCAAAGAACGGGAGGCTTTTCACCCTCCCCGCTCCGTTT-AACGTTGTGAA 2093
| | | || || ||||| |||| || | || ||| | ||||| ||| ||| |||||||
Sbjct 2202 GCCATAGTGTCCAAGAATGGGAAGCGCGTAACTCTCTCAGCTCC-TTTGAACTTTGTGAA 2260
Query 2094 CGTGCATCTTTACCAGAACGCGATACTACCCATGCAACAAG 2134
||| || |||||||| ||| | ||| |||| ||||||||||
Sbjct 2261 CGTTCACCTTTACCAAAACACTATATTACCAATGCAACAAG 2301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98310922345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5