BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45950.1
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937284 jgi|Araly1|937284|scaffold_501475.1 1428 0.0
Ahg475672 jgi|Araly1|475672|fgenesh2_kg.2__802__AT4G37120.1 990 0.0
Ahg490928 jgi|Araly1|490928|fgenesh2_kg.7__361__AT4G37120.1 542 3e-153
> Ahg937284 jgi|Araly1|937284|scaffold_501475.1
Length=1148
Score = 1428 bits (773), Expect = 0.0
Identities = 977/1072 (91%), Gaps = 28/1072 (3%)
Strand=Plus/Plus
Query 1 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGAAAGATCATAGGAAGCAAAAGGAATTA 60
||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct 21 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCGTAGGAAGCAAAAAGAATTA 80
Query 61 GAGGAAGCTCGTAAAGCCGGGCTTGCTCCGGCTGAGGTAGACGAGGGTGGAAAGGAAATC 120
|| |||||| | ||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 81 GACGAAGCTAGAAAAGCCGGGCTTGTTCCGGCTGAGGTAGACGAGAATGGAAAGGAAATC 140
Query 121 AATCTTCACATACCTAAGTATTTGACAAT-TCCTCCATTATATGCCAAGTCTGAAAAACC 179
|||| ||||||| ||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 141 AATCCTCACATAGCTAAGTATTTG-TTATCTCCTCCATTCTATGCCAAGTCTGAAAAACC 199
Query 180 GAGCTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAACATCATATTATGA 239
||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 200 GAGTTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAAAAGCATATTATGA 259
Query 240 CCGAGGTGCAAAGACTTATCAAGCCGAAAAGTATCGGAAAGGAGCGTGTCAAAACTGTGG 299
| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 260 CAGAGGTGCAAAGACTTATCAAGCCGAAAAATATCGCAAAGGAGCGTGTCAAAACTGTGG 319
Query 300 TGCAATGACGCATGATGTGAAAACATGTATGGAAAGACCTCGTAAGGTTGGTGCAAAATA 359
||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 320 TGCAATGACACATGATATGAAAACATGTATAGAAAGACCTCGTAAGGTTGGTGCAAAATA 379
Query 360 CACAGACAAAAACATTGCACCTGATGAGAAAATCGAGAGTCTTGAATTTGACTATGATGG 419
|||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 380 CACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTCTTGAATTTGATTATGATGG 439
Query 420 CAAAAGGGACCGATGGAATGGTTATGATCCTTCGTCTTATTGTCATGTGAGAGATCGTCA 479
|| || ||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 440 TAAGAGAGACCGATGGAATGGTTATGATCCTTCGTCTTATCGTCATGTGAGAGATCTTTA 499
Query 480 TGAAGCAAAAGAGAATGCACGAGAGAAGTACCTGAACGAGCAACAACT-AATTGCGAAAC 538
||||||||||||||||||||||||||| ||| |||| ||||||||||| || | ||||
Sbjct 500 TGAAGCAAAAGAGAATGCACGAGAGAATTACTTGAAGGAGCAACAACTTAA--G--AAAC 555
Query 539 TAGAGGAGAA-GA---A-C-ATTGATGGAGAGGAAGAAGACTTAAGGGTTGATGAAGCCA 592
||||||| || || | | | ||||||||||||||||||||||||||||||||| | |
Sbjct 556 TAGAGGATAATGATGCAACCAGTGATGGAGAGGAAGAAGACTTAAGGGTTGATGA-G--A 612
Query 593 AGATTGATGAGAGCATGCAGGTGGATTTTGCAAAGGTTAAAAAACGTGTTCGAACAACTG 652
| | || || | | |||||||||||||||||||||||||||| ||||||||||
Sbjct 613 -GC---A--AG--CA-G--G-TGGATTTTGCAAAGGTTAAAAAACGTGTACGAACAACTG 660
Query 653 ATGGTGGAAGCAAAGGAACTGTAAGGAATTTGCGTATCAGAGAAGATCCTGCAAAATACT 712
|||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 661 ATGGTGGAAGCACAGGAACTGTAAGGAATCTGCGTATTAGAGAAGATACTGCAAAATACT 720
Query 713 TGTTGAACCTTGATGTTAACTCAGCTTATTATGATCCTAAATCTCGATCCATGCGTGAAG 772
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 721 TGTTGAACCTTGATGTTAACTCAGCTTATTATGACCCTAAATCTCGATCCATGCGTGAAG 780
Query 773 ATCCGCTCCCATATACAGATCCAAATGAGAAATTTTGTTTGAGAGATAATCAATATAGAA 832
||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 ATCCGCTCCCAGATGCAAATCCAAATGAGAAATTTTGTTTGGGAGATAATCAATATAGAA 840
Query 833 ACAGTGGTCAAGCTATAGAGTTCAAACAGCAAAACATGTATTCATGTGAAGCGTTTGACA 892
||||||| |||||| ||||||||||||| | ||||||||||||||||||||| |||| ||
Sbjct 841 ACAGTGGCCAAGCTCTAGAGTTCAAACAACTAAACATGTATTCATGTGAAGCATTTGGCA 900
Query 893 AAGGACAGGACATACATATGCAAGCGGCTCCATCTCAAGCTGAGTTGTGTTATAAGAGGG 952
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGGACAAGACATACATATGCAAGCGGCTCCATCTCAAGCTGAGTTGTGTTATAAGAGGG 960
Query 953 TTAAGATTGCAAAGGAAAAACTGAATTCTCAGAGAAAGGACGCAATCATTGCAAAGTATG 1012
||||| || ||||||||||||||||| ||||| ||| ||| ||||||| ||||||||||
Sbjct 961 TTAAGGTTACAAAGGAAAAACTGAATAATCAGATAAAAGACACAATCATGGCAAAGTATG 1020
Query 1013 GGGATGCAGCTGCAAAAGATGACATTCCGATGGAGCTTTTGCTTGGACAAAG 1064
|| ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1021 GGAATGCAGCTGCAAAAGATGATATTCCGATGGAGCTTTTGCTTGGGCAAAG 1072
> Ahg475672 jgi|Araly1|475672|fgenesh2_kg.2__802__AT4G37120.1
Length=1636
Score = 990 bits (536), Expect = 0.0
Identities = 923/1104 (84%), Gaps = 50/1104 (5%)
Strand=Plus/Plus
Query 1 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGAAAGATCATAGGAAGCAAAAGGAATTA 60
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 26 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCATAGGAAGCAAATCGAATTA 85
Query 61 GAGGAAGCTCGTAAAGCCGGGCTTGCTCCGGCTGAGGTAGACGAGGGTGGAAAGGAAATC 120
||||||||||||||||||||||||||||| |||||||| || |||| |||||||||||||
Sbjct 86 GAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGAGGTTGATGAGGATGGAAAGGAAATC 145
Query 121 AATCTTCACATACCTAAGTATTTGACAAT-TCCTCCATTATATGCC-AAGTCTGAAAAAC 178
|||| ||| || || ||||| || || | | |||||| ||| | || ||||||||||
Sbjct 146 AATCCTCATATCCCGCAGTATATGTCA-TCTGCTCCATGGTAT-CTTAATTCTGAAAAAC 203
Query 179 CGAGCTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCAC-AACATCATATTAT 237
|||| ||||||||||||| ||| ||||| | | | || || ||| || |||| |||
Sbjct 204 CGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATCCTAATTACACTAAG-TCATGGTAT 262
Query 238 GACCGAGGTGCAAAGA-CTTATCAAGCCGAAAAGTATCGGAAAGG-AGCGTGTCAAAACT 295
||| |||||||||||| ||| |||||| ||||| || || ||||| ||||||||||||||
Sbjct 263 GACAGAGGTGCAAAGATCTT-TCAAGCTGAAAAATACCG-AAAGGGAGCGTGTCAAAACT 320
Query 296 GTGGTGCAATGACGCATGA-TG-TGAAAACATGTATGGAAAGACCTCGTAAGGTTGGTGC 353
||||||||||||||||| | || | ||| | |||||||| || |||||||||||||| ||
Sbjct 321 GTGGTGCAATGACGCAT-ACTGCT-AAAGCTTGTATGGATAGGCCTCGTAAGGTTGGGGC 378
Query 354 AAAATACACAGACAAAAACATTGCACCTGATGAGAAAATCGAGAGTCTTGAATTTGACTA 413
||| |||||| |||| ||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 379 AAAGTACACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTTTTGAGCTTGACTA 438
Query 414 TGATGGCAAAAGGGACCGATGGAATGGTTATGATCCTTCGTCTTATTGTCATGTGAGAGA 473
|||||||| || |||||||||||||||||||||||||| | || || ||||| |||
Sbjct 439 CGATGGCAAGAGAGACCGATGGAATGGTTATGATCCTTCAACCTACCATCGTGTGATAGA 498
Query 474 TCGTCATGAAGCAAAAGAGAATGCACGAGAGAAGTACCTGAACGAGCAACAACT-AAT-- 530
|| | |||||||||||||| |||| ||| |||||||| |||| ||||| ||||| ||
Sbjct 499 TCTTTATGAAGCAAAAGAGGATGCTCGAAAGAAGTACTTGAAGGAGCAGCAACTTAAGAA 558
Query 531 --TGC-G-AAA----C--TA--GA----GGAGA--AG--AAC-ATTGATGGAGAGGAAGA 569
|| | ||| | || || || || || ||| | |||||| ||||||||
Sbjct 559 ACTGGAGGAAAAGAACAATAACGAAAAAGGTGATGAGGCAACCAGTGATGGGGAGGAAGA 618
Query 570 AGA------CTTAAGGGTTGATGAAGCCAAGATTGATGAGAGCATGCAGGTGGATTTTGC 623
||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||
Sbjct 619 AGAAGATGACTTAAGGGTTGATGAAGCCAAGGTTGATGAGAGCAGGCAGATGGATTTTGC 678
Query 624 AAAGGTTAAAAAACGTGTTCGAACAACTGATGGTGGAAGCAAAGGAACTGTAAGGAATTT 683
||||||| |||| |||||||||||||||| |||||| |||| ||||||||| |||||| |
Sbjct 679 AAAGGTTGAAAAGCGTGTTCGAACAACTGGTGGTGGTAGCACAGGAACTGTTAGGAATCT 738
Query 684 GCGTATCAGAGAAGATC-CTGCAAAATACTTGTTGAACCTTGATGTTAACTCAGCTTATT 742
||||||||||||||| | ||||||||||| |||||||||| ||||| ||||||||| |||
Sbjct 739 GCGTATCAGAGAAGA-CACTGCAAAATACCTGTTGAACCTCGATGTCAACTCAGCTCATT 797
Query 743 ATGATCCTAAATCTCGATCCATGCGTGAAGATCCGCTCCCATATACAGATCCAAATGAGA 802
|||| |||||| |||| || ||||||||||| ||||| ||| || ||||||||||||| |
Sbjct 798 ATGACCCTAAAACTCGTTCTATGCGTGAAGACCCGCTTCCAGATGCAGATCCAAATGACA 857
Query 803 AATTTTGTTTGAGAGATAATCAATATAGAAACAGTGGTCAAGCTATAGAGTTCAAACAGC 862
| |||| | || ||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 858 AGTTTTATCTGGGAGATAATCAATATAGAAACAGTGGCCAAGCTTTGGAGTTCAAACAGC 917
Query 863 AAAACATGTATTCATGTGAAGCGTTTGACAAAGGACAGGACATACATATGCAAGCGGCTC 922
|||||| |||| || ||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 918 TAAACATCCATTCGTGGGAAGCATTTGACAAGGGACAGGACATGCATATGCAAGCGGCTC 977
Query 923 CATCTCAAGCTGAGTTG-TGTTATAAGAGGGTTAAGATTGCAAAGGAAAAACTGAATTCT 981
| ||||||||||| ||| | | ||||||| || || |||| ||||| |||||||| |||
Sbjct 978 CCTCTCAAGCTGAATTGCTCT-ATAAGAGCTTTCAGGTTGCGAAGGAGAAACTGAAATCT 1036
Query 982 CAGAGAAAGGACGCAATCATTG-CAAAGTATGGGGATGCAGCTGCAAAAGATGACATTCC 1040
|||| ||||||| ||||||| | ||| ||| ||| |||||||| || ||||||| |||||
Sbjct 1037 CAGACAAAGGACACAATCATGGACAA-GTACGGGAATGCAGCTACAGAAGATGAAATTCC 1095
Query 1041 GATGGAGCTTTTGCTTGGACAAAG 1064
||||||||||||||||| |||||
Sbjct 1096 AATGGAGCTTTTGCTTGGGCAAAG 1119
> Ahg490928 jgi|Araly1|490928|fgenesh2_kg.7__361__AT4G37120.1
Length=1796
Score = 542 bits (293), Expect = 3e-153
Identities = 477/563 (85%), Gaps = 23/563 (4%)
Strand=Plus/Plus
Query 1 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGAAAGATCATAGGAAGCAAA--AGGAAT 58
||||||||||||||||||||||||||||||||| |||||||||||||| ||| || |||
Sbjct 24 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCATAGGAAG-AAATTAG-AAT 81
Query 59 TAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCGGCTGAGGTAGACGAGGGTGG-AAAGGAA 117
||||||||||||||||||| || |||||||| |||||||| || |||| ||| |||| ||
Sbjct 82 TAGAGGAAGCTCGTAAAGCTGGTCTTGCTCCTGCTGAGGTCGATGAGGATGGCAAAG-AA 140
Query 118 ATCAATCTTCACATACCTAAGTATTTGACAATTCCTCCATTATATGC-CAAGTCTGAAAA 176
||||||| |||||||||| ||||| || ||| |||||| ||| | ||| ||||||||
Sbjct 141 ATCAATCCTCACATACCTGAGTATATGTCAAAAGCTCCATGGTAT-CTCAACTCTGAAAA 199
Query 177 ACCGAGCTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTT-TCCACAACATCATATT 235
|||||| ||||||||||||||||||||||||||| |||||| || | || || || |
Sbjct 200 ACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTGAACCCGAACTCAAAAAAAT-ATGGT 258
Query 236 ATGACCGAGGTGCAAAGA-CTTATCAAGCCGAAAAGTATCGGAAAGGAGCGTGTCA-AAA 293
|||| |||||||||||| | ||||||||||||| || || || ||||||||| | |||
Sbjct 259 ATGATAGAGGTGCAAAGATCC-ATCAAGCCGAAAAATACCGCAAGGGAGCGTGT-ATAAA 316
Query 294 CTGTGGTGCAATGACGCAT-GATGTGAAAACATGTATGGAAAGACCTCGTAAGGTTGGTG 352
|||||||||||||||||| | | | ||| |||||||||| |||||||||||| |||| |
Sbjct 317 CTGTGGTGCAATGACGCACAGTTCT-AAAGCATGTATGGATAGACCTCGTAAGATTGGAG 375
Query 353 CAAAATACACAGACAAAAACATTGCACCTGATGAGAAAATCGAGAGTCTTGAATTTGACT 412
| ||||||||| ||| ||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 376 CTAAATACACAAACATGAACATTGCAGCTGATGAGAAAATCGAGAGTTTTGAACTTGACT 435
Query 413 ATGATGGCAAAAGGGACCGATGGAATGGTTATGATCCTTCGTCTTATTGTCATGTGAG-A 471
|||||||||| || ||| |||||||||||||||||||||| || || |||||||| | |
Sbjct 436 ATGATGGCAAGAGAGACAGATGGAATGGTTATGATCCTTCATCCTACCGTCATGTG-GTA 494
Query 472 GATCGTCATGAAGCAAAAGAGAATGCACGAGAGAAGTACCTGAACGAGCAACAACT-AAT 530
|||||| |||| ||||||||| | |||||| ||||||| || || ||||| ||||| ||
Sbjct 495 GATCGTTATGATGCAAAAGAGGAGGCACGAAAGAAGTATCTCAAGGAGCAGCAACTTAA- 553
Query 531 TGCGAAACTAGAGGAGAAGAACA 553
| |||||||||||||||||||
Sbjct 554 -G--AAACTAGAGGAGAAGAACA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43193264961
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5