BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G45950.1 Length=1158 Score E Sequences producing significant alignments: (Bits) Value Ahg937284 jgi|Araly1|937284|scaffold_501475.1 1428 0.0 Ahg475672 jgi|Araly1|475672|fgenesh2_kg.2__802__AT4G37120.1 990 0.0 Ahg490928 jgi|Araly1|490928|fgenesh2_kg.7__361__AT4G37120.1 542 3e-153 > Ahg937284 jgi|Araly1|937284|scaffold_501475.1 Length=1148 Score = 1428 bits (773), Expect = 0.0 Identities = 977/1072 (91%), Gaps = 28/1072 (3%) Strand=Plus/Plus Query 1 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGAAAGATCATAGGAAGCAAAAGGAATTA 60 ||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| Sbjct 21 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCGTAGGAAGCAAAAAGAATTA 80 Query 61 GAGGAAGCTCGTAAAGCCGGGCTTGCTCCGGCTGAGGTAGACGAGGGTGGAAAGGAAATC 120 || |||||| | ||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 81 GACGAAGCTAGAAAAGCCGGGCTTGTTCCGGCTGAGGTAGACGAGAATGGAAAGGAAATC 140 Query 121 AATCTTCACATACCTAAGTATTTGACAAT-TCCTCCATTATATGCCAAGTCTGAAAAACC 179 |||| ||||||| ||||||||||| || ||||||||| |||||||||||||||||||| Sbjct 141 AATCCTCACATAGCTAAGTATTTG-TTATCTCCTCCATTCTATGCCAAGTCTGAAAAACC 199 Query 180 GAGCTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAACATCATATTATGA 239 ||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 200 GAGTTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCACAAAAGCATATTATGA 259 Query 240 CCGAGGTGCAAAGACTTATCAAGCCGAAAAGTATCGGAAAGGAGCGTGTCAAAACTGTGG 299 | |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 260 CAGAGGTGCAAAGACTTATCAAGCCGAAAAATATCGCAAAGGAGCGTGTCAAAACTGTGG 319 Query 300 TGCAATGACGCATGATGTGAAAACATGTATGGAAAGACCTCGTAAGGTTGGTGCAAAATA 359 ||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 320 TGCAATGACACATGATATGAAAACATGTATAGAAAGACCTCGTAAGGTTGGTGCAAAATA 379 Query 360 CACAGACAAAAACATTGCACCTGATGAGAAAATCGAGAGTCTTGAATTTGACTATGATGG 419 |||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 380 CACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTCTTGAATTTGATTATGATGG 439 Query 420 CAAAAGGGACCGATGGAATGGTTATGATCCTTCGTCTTATTGTCATGTGAGAGATCGTCA 479 || || ||||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct 440 TAAGAGAGACCGATGGAATGGTTATGATCCTTCGTCTTATCGTCATGTGAGAGATCTTTA 499 Query 480 TGAAGCAAAAGAGAATGCACGAGAGAAGTACCTGAACGAGCAACAACT-AATTGCGAAAC 538 ||||||||||||||||||||||||||| ||| |||| ||||||||||| || | |||| Sbjct 500 TGAAGCAAAAGAGAATGCACGAGAGAATTACTTGAAGGAGCAACAACTTAA--G--AAAC 555 Query 539 TAGAGGAGAA-GA---A-C-ATTGATGGAGAGGAAGAAGACTTAAGGGTTGATGAAGCCA 592 ||||||| || || | | | ||||||||||||||||||||||||||||||||| | | Sbjct 556 TAGAGGATAATGATGCAACCAGTGATGGAGAGGAAGAAGACTTAAGGGTTGATGA-G--A 612 Query 593 AGATTGATGAGAGCATGCAGGTGGATTTTGCAAAGGTTAAAAAACGTGTTCGAACAACTG 652 | | || || | | |||||||||||||||||||||||||||| |||||||||| Sbjct 613 -GC---A--AG--CA-G--G-TGGATTTTGCAAAGGTTAAAAAACGTGTACGAACAACTG 660 Query 653 ATGGTGGAAGCAAAGGAACTGTAAGGAATTTGCGTATCAGAGAAGATCCTGCAAAATACT 712 |||||||||||| |||||||||||||||| ||||||| ||||||||| |||||||||||| Sbjct 661 ATGGTGGAAGCACAGGAACTGTAAGGAATCTGCGTATTAGAGAAGATACTGCAAAATACT 720 Query 713 TGTTGAACCTTGATGTTAACTCAGCTTATTATGATCCTAAATCTCGATCCATGCGTGAAG 772 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 721 TGTTGAACCTTGATGTTAACTCAGCTTATTATGACCCTAAATCTCGATCCATGCGTGAAG 780 Query 773 ATCCGCTCCCATATACAGATCCAAATGAGAAATTTTGTTTGAGAGATAATCAATATAGAA 832 ||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||| Sbjct 781 ATCCGCTCCCAGATGCAAATCCAAATGAGAAATTTTGTTTGGGAGATAATCAATATAGAA 840 Query 833 ACAGTGGTCAAGCTATAGAGTTCAAACAGCAAAACATGTATTCATGTGAAGCGTTTGACA 892 ||||||| |||||| ||||||||||||| | ||||||||||||||||||||| |||| || Sbjct 841 ACAGTGGCCAAGCTCTAGAGTTCAAACAACTAAACATGTATTCATGTGAAGCATTTGGCA 900 Query 893 AAGGACAGGACATACATATGCAAGCGGCTCCATCTCAAGCTGAGTTGTGTTATAAGAGGG 952 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 AAGGACAAGACATACATATGCAAGCGGCTCCATCTCAAGCTGAGTTGTGTTATAAGAGGG 960 Query 953 TTAAGATTGCAAAGGAAAAACTGAATTCTCAGAGAAAGGACGCAATCATTGCAAAGTATG 1012 ||||| || ||||||||||||||||| ||||| ||| ||| ||||||| |||||||||| Sbjct 961 TTAAGGTTACAAAGGAAAAACTGAATAATCAGATAAAAGACACAATCATGGCAAAGTATG 1020 Query 1013 GGGATGCAGCTGCAAAAGATGACATTCCGATGGAGCTTTTGCTTGGACAAAG 1064 || ||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1021 GGAATGCAGCTGCAAAAGATGATATTCCGATGGAGCTTTTGCTTGGGCAAAG 1072 > Ahg475672 jgi|Araly1|475672|fgenesh2_kg.2__802__AT4G37120.1 Length=1636 Score = 990 bits (536), Expect = 0.0 Identities = 923/1104 (84%), Gaps = 50/1104 (5%) Strand=Plus/Plus Query 1 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGAAAGATCATAGGAAGCAAAAGGAATTA 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 26 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCATAGGAAGCAAATCGAATTA 85 Query 61 GAGGAAGCTCGTAAAGCCGGGCTTGCTCCGGCTGAGGTAGACGAGGGTGGAAAGGAAATC 120 ||||||||||||||||||||||||||||| |||||||| || |||| ||||||||||||| Sbjct 86 GAGGAAGCTCGTAAAGCCGGGCTTGCTCCAGCTGAGGTTGATGAGGATGGAAAGGAAATC 145 Query 121 AATCTTCACATACCTAAGTATTTGACAAT-TCCTCCATTATATGCC-AAGTCTGAAAAAC 178 |||| ||| || || ||||| || || | | |||||| ||| | || |||||||||| Sbjct 146 AATCCTCATATCCCGCAGTATATGTCA-TCTGCTCCATGGTAT-CTTAATTCTGAAAAAC 203 Query 179 CGAGCTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTTTCCAC-AACATCATATTAT 237 |||| ||||||||||||| ||| ||||| | | | || || ||| || |||| ||| Sbjct 204 CGAGTTTGAAGCATCAAAGGAAATGGAAGAGTGATCCTAATTACACTAAG-TCATGGTAT 262 Query 238 GACCGAGGTGCAAAGA-CTTATCAAGCCGAAAAGTATCGGAAAGG-AGCGTGTCAAAACT 295 ||| |||||||||||| ||| |||||| ||||| || || ||||| |||||||||||||| Sbjct 263 GACAGAGGTGCAAAGATCTT-TCAAGCTGAAAAATACCG-AAAGGGAGCGTGTCAAAACT 320 Query 296 GTGGTGCAATGACGCATGA-TG-TGAAAACATGTATGGAAAGACCTCGTAAGGTTGGTGC 353 ||||||||||||||||| | || | ||| | |||||||| || |||||||||||||| || Sbjct 321 GTGGTGCAATGACGCAT-ACTGCT-AAAGCTTGTATGGATAGGCCTCGTAAGGTTGGGGC 378 Query 354 AAAATACACAGACAAAAACATTGCACCTGATGAGAAAATCGAGAGTCTTGAATTTGACTA 413 ||| |||||| |||| ||||||||||||||||||||||| |||||| |||| ||||||| Sbjct 379 AAAGTACACAAACAAGAACATTGCACCTGATGAGAAAATTGAGAGTTTTGAGCTTGACTA 438 Query 414 TGATGGCAAAAGGGACCGATGGAATGGTTATGATCCTTCGTCTTATTGTCATGTGAGAGA 473 |||||||| || |||||||||||||||||||||||||| | || || ||||| ||| Sbjct 439 CGATGGCAAGAGAGACCGATGGAATGGTTATGATCCTTCAACCTACCATCGTGTGATAGA 498 Query 474 TCGTCATGAAGCAAAAGAGAATGCACGAGAGAAGTACCTGAACGAGCAACAACT-AAT-- 530 || | |||||||||||||| |||| ||| |||||||| |||| ||||| ||||| || Sbjct 499 TCTTTATGAAGCAAAAGAGGATGCTCGAAAGAAGTACTTGAAGGAGCAGCAACTTAAGAA 558 Query 531 --TGC-G-AAA----C--TA--GA----GGAGA--AG--AAC-ATTGATGGAGAGGAAGA 569 || | ||| | || || || || || ||| | |||||| |||||||| Sbjct 559 ACTGGAGGAAAAGAACAATAACGAAAAAGGTGATGAGGCAACCAGTGATGGGGAGGAAGA 618 Query 570 AGA------CTTAAGGGTTGATGAAGCCAAGATTGATGAGAGCATGCAGGTGGATTTTGC 623 ||| |||||||||||||||||||||| |||||||||||| |||| |||||||||| Sbjct 619 AGAAGATGACTTAAGGGTTGATGAAGCCAAGGTTGATGAGAGCAGGCAGATGGATTTTGC 678 Query 624 AAAGGTTAAAAAACGTGTTCGAACAACTGATGGTGGAAGCAAAGGAACTGTAAGGAATTT 683 ||||||| |||| |||||||||||||||| |||||| |||| ||||||||| |||||| | Sbjct 679 AAAGGTTGAAAAGCGTGTTCGAACAACTGGTGGTGGTAGCACAGGAACTGTTAGGAATCT 738 Query 684 GCGTATCAGAGAAGATC-CTGCAAAATACTTGTTGAACCTTGATGTTAACTCAGCTTATT 742 ||||||||||||||| | ||||||||||| |||||||||| ||||| ||||||||| ||| Sbjct 739 GCGTATCAGAGAAGA-CACTGCAAAATACCTGTTGAACCTCGATGTCAACTCAGCTCATT 797 Query 743 ATGATCCTAAATCTCGATCCATGCGTGAAGATCCGCTCCCATATACAGATCCAAATGAGA 802 |||| |||||| |||| || ||||||||||| ||||| ||| || ||||||||||||| | Sbjct 798 ATGACCCTAAAACTCGTTCTATGCGTGAAGACCCGCTTCCAGATGCAGATCCAAATGACA 857 Query 803 AATTTTGTTTGAGAGATAATCAATATAGAAACAGTGGTCAAGCTATAGAGTTCAAACAGC 862 | |||| | || ||||||||||||||||||||||||| |||||| | ||||||||||||| Sbjct 858 AGTTTTATCTGGGAGATAATCAATATAGAAACAGTGGCCAAGCTTTGGAGTTCAAACAGC 917 Query 863 AAAACATGTATTCATGTGAAGCGTTTGACAAAGGACAGGACATACATATGCAAGCGGCTC 922 |||||| |||| || ||||| |||||||| ||||||||||| |||||||||||||||| Sbjct 918 TAAACATCCATTCGTGGGAAGCATTTGACAAGGGACAGGACATGCATATGCAAGCGGCTC 977 Query 923 CATCTCAAGCTGAGTTG-TGTTATAAGAGGGTTAAGATTGCAAAGGAAAAACTGAATTCT 981 | ||||||||||| ||| | | ||||||| || || |||| ||||| |||||||| ||| Sbjct 978 CCTCTCAAGCTGAATTGCTCT-ATAAGAGCTTTCAGGTTGCGAAGGAGAAACTGAAATCT 1036 Query 982 CAGAGAAAGGACGCAATCATTG-CAAAGTATGGGGATGCAGCTGCAAAAGATGACATTCC 1040 |||| ||||||| ||||||| | ||| ||| ||| |||||||| || ||||||| ||||| Sbjct 1037 CAGACAAAGGACACAATCATGGACAA-GTACGGGAATGCAGCTACAGAAGATGAAATTCC 1095 Query 1041 GATGGAGCTTTTGCTTGGACAAAG 1064 ||||||||||||||||| ||||| Sbjct 1096 AATGGAGCTTTTGCTTGGGCAAAG 1119 > Ahg490928 jgi|Araly1|490928|fgenesh2_kg.7__361__AT4G37120.1 Length=1796 Score = 542 bits (293), Expect = 3e-153 Identities = 477/563 (85%), Gaps = 23/563 (4%) Strand=Plus/Plus Query 1 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGAAAGATCATAGGAAGCAAA--AGGAAT 58 ||||||||||||||||||||||||||||||||| |||||||||||||| ||| || ||| Sbjct 24 ATGGCGACGGCTTCAGTTGCTTTTAAGTCTAGGGAAGATCATAGGAAG-AAATTAG-AAT 81 Query 59 TAGAGGAAGCTCGTAAAGCCGGGCTTGCTCCGGCTGAGGTAGACGAGGGTGG-AAAGGAA 117 ||||||||||||||||||| || |||||||| |||||||| || |||| ||| |||| || Sbjct 82 TAGAGGAAGCTCGTAAAGCTGGTCTTGCTCCTGCTGAGGTCGATGAGGATGGCAAAG-AA 140 Query 118 ATCAATCTTCACATACCTAAGTATTTGACAATTCCTCCATTATATGC-CAAGTCTGAAAA 176 ||||||| |||||||||| ||||| || ||| |||||| ||| | ||| |||||||| Sbjct 141 ATCAATCCTCACATACCTGAGTATATGTCAAAAGCTCCATGGTAT-CTCAACTCTGAAAA 199 Query 177 ACCGAGCTTGAAGCATCAAAAGAATTGGAAAACTAAACCCGTT-TCCACAACATCATATT 235 |||||| ||||||||||||||||||||||||||| |||||| || | || || || | Sbjct 200 ACCGAGTTTGAAGCATCAAAAGAATTGGAAAACTGAACCCGAACTCAAAAAAAT-ATGGT 258 Query 236 ATGACCGAGGTGCAAAGA-CTTATCAAGCCGAAAAGTATCGGAAAGGAGCGTGTCA-AAA 293 |||| |||||||||||| | ||||||||||||| || || || ||||||||| | ||| Sbjct 259 ATGATAGAGGTGCAAAGATCC-ATCAAGCCGAAAAATACCGCAAGGGAGCGTGT-ATAAA 316 Query 294 CTGTGGTGCAATGACGCAT-GATGTGAAAACATGTATGGAAAGACCTCGTAAGGTTGGTG 352 |||||||||||||||||| | | | ||| |||||||||| |||||||||||| |||| | Sbjct 317 CTGTGGTGCAATGACGCACAGTTCT-AAAGCATGTATGGATAGACCTCGTAAGATTGGAG 375 Query 353 CAAAATACACAGACAAAAACATTGCACCTGATGAGAAAATCGAGAGTCTTGAATTTGACT 412 | ||||||||| ||| ||||||||| |||||||||||||||||||| ||||| |||||| Sbjct 376 CTAAATACACAAACATGAACATTGCAGCTGATGAGAAAATCGAGAGTTTTGAACTTGACT 435 Query 413 ATGATGGCAAAAGGGACCGATGGAATGGTTATGATCCTTCGTCTTATTGTCATGTGAG-A 471 |||||||||| || ||| |||||||||||||||||||||| || || |||||||| | | Sbjct 436 ATGATGGCAAGAGAGACAGATGGAATGGTTATGATCCTTCATCCTACCGTCATGTG-GTA 494 Query 472 GATCGTCATGAAGCAAAAGAGAATGCACGAGAGAAGTACCTGAACGAGCAACAACT-AAT 530 |||||| |||| ||||||||| | |||||| ||||||| || || ||||| ||||| || Sbjct 495 GATCGTTATGATGCAAAAGAGGAGGCACGAAAGAAGTATCTCAAGGAGCAGCAACTTAA- 553 Query 531 TGCGAAACTAGAGGAGAAGAACA 553 | ||||||||||||||||||| Sbjct 554 -G--AAACTAGAGGAGAAGAACA 573 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43193264961 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5