BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45980.1
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1 769 0.0
Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1 599 1e-170
Ahg496128 jgi|Araly1|496128|fgenesh2_kg.8__1944__AT5G59910.1 492 2e-138
Ahg333229 jgi|Araly1|333229|fgenesh1_pm.C_scaffold_189000001 385 3e-106
Ahg482740 jgi|Araly1|482740|fgenesh2_kg.4__1800__AT2G37470.1 287 8e-77
Ahg898300 jgi|Araly1|898300|Al_scaffold_0005_2266 252 3e-66
> Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1
Length=673
Score = 769 bits (416), Expect = 0.0
Identities = 503/545 (92%), Gaps = 6/545 (1%)
Strand=Plus/Plus
Query 1 AGATATCAAAATCACTCAGATCTGTGCTTCTTCTTCTTC-AC-CCA-GA-AAAGTAAAAC 56
||||||||||||||||||||||||||||||||||||||| | || | || ||||
Sbjct 1 AGATATCAAAATCACTCAGATCTGTGCTTCTTCTTCTTCTTCATCATCACCCAG-AAAAA 59
Query 57 A-AAAGTCAAAACAATGGCGCCGAGAGCAGAGAAGAAGCCCGCGGAGAAGAAACCAGCCG 115
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 ATAAAGTCAAAACAATGGCGCCGAGAGCAGAGAAGAAGCCAGCGGAGAAGAAACCAGCCG 119
Query 116 CCGAGAAACCAGTAGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAA 175
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 120 CCGAGAAACCAGTAGAGGAGAAATCCAAAGCCGAGAAAGCTCCGGCAGAGAAGAAACCAA 179
Query 176 AAGCCGGCAAGAAACTCCCGAAGGAAGCCGGGGCCGGCGGCGATaagaagaagaagatga 235
|||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||
Sbjct 180 AAGCCGGCAAGAAACTCCCGAAAGAAGCCGGCGCCGGCGGCGACAAAAAGAAGAAGATGA 239
Query 236 agaagaagaGTGTGGAAACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATC 295
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 AGAAGAAGAGTGTCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTTCATC 299
Query 296 CAGATATTGGTATTTCAAGCAAGGCTATGGGTATTATGAACAGTTTCATCAACGACATCT 355
|||||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||
Sbjct 300 CAGATATTGGTATTTCGAGCAAAGCTATGGGAATCATGAACAGTTTCATCAACGATATCT 359
Query 356 TCGAGAAATTGGCATCGGAATCTTCAAAGCTCGCTAGGTATAACAAGAAGCCGACGATTA 415
|||||||||||||||||||||| || ||||| || |||||||| ||||||||||||||||
Sbjct 360 TCGAGAAATTGGCATCGGAATCGTCGAAGCTTGCGAGGTATAATAAGAAGCCGACGATTA 419
Query 416 CTTCTCGGGAGATTCAGACTGCTGTTAGACTCGTTCTTCCTGGTGAGCTCGCTAAACACG 475
||||| ||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 420 CTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGGTGAGCTTGCGAAACACG 479
Query 476 CTGTTTCTGAAGGAACCAAGGCTGTTACCAAATTCACAAGCTCTTGAATTAGTAAATTAG 535
|||||||||| ||||| ||||| || ||||||||||| ||||||||| ||||||||||||
Sbjct 480 CTGTTTCTGAGGGAACTAAGGCGGTGACCAAATTCACCAGCTCTTGATTTAGTAAATTAG 539
Query 536 GGTTT 540
|||||
Sbjct 540 GGTTT 544
> Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1
Length=565
Score = 599 bits (324), Expect = 1e-170
Identities = 393/427 (92%), Gaps = 2/427 (0%)
Strand=Plus/Plus
Query 100 GAGAAGAAACCAGCCGCCG-AGAAACCAGTAGAGGAGAAATCAAAAGCCGAGAAAGCTCC 158
|||||||| || || | | |||||||||| |||||||||||||||||||||||||||||
Sbjct 82 GAGAAGAAGCCGGCAG-AGAAGAAACCAGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCC 140
Query 159 GGCGGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAGGAAGCCGGGGCCGGCGGCGA 218
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 141 GGCGGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAAGAAGCCGGCGCCGGCGGAGA 200
Query 219 TaagaagaagaagatgaagaagaagaGTGTGGAAACTTACAAGATCTACATCTTCAAGGT 278
||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 201 CAAGAAGAAGAAGATGAAGAAGAAGAGTGTTGAGACATACAAGATCTACATCTTCAAGGT 260
Query 279 TCTGAAACAAGTTCATCCAGATATTGGTATTTCAAGCAAGGCTATGGGTATTATGAACAG 338
|||||| |||||||||||||||||||| || |||||||| |||||||| || ||||||||
Sbjct 261 TCTGAAGCAAGTTCATCCAGATATTGGAATCTCAAGCAAAGCTATGGGAATCATGAACAG 320
Query 339 TTTCATCAACGACATCTTCGAGAAATTGGCATCGGAATCTTCAAAGCTCGCTAGGTATAA 398
|||||| ||||| |||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 321 TTTCATTAACGATATCTTCGAGAAATTGGCATCGGAATCGTCGAAGCTTGCTAGGTATAA 380
Query 399 CAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAGACTCGTTCTTCCTGG 458
|||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 381 TAAGAAGCCAACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGG 440
Query 459 TGAGCTCGCTAAACACGCTGTTTCTGAAGGAACCAAGGCTGTTACCAAATTCACAAGCTC 518
||||||||| ||||||||||||||||||||||| |||||||| || |||||||| |||||
Sbjct 441 TGAGCTCGCGAAACACGCTGTTTCTGAAGGAACTAAGGCTGTGACTAAATTCACCAGCTC 500
Query 519 TTGAATT 525
|||||||
Sbjct 501 TTGAATT 507
> Ahg496128 jgi|Araly1|496128|fgenesh2_kg.8__1944__AT5G59910.1
Length=698
Score = 492 bits (266), Expect = 2e-138
Identities = 406/475 (85%), Gaps = 4/475 (1%)
Strand=Plus/Plus
Query 68 CAATGGCGCCGAGAGCAGAGAAGAAGCCCGCGGAGAAGAAACCAGCCGCCGAGAAACCAG 127
|||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| || |
Sbjct 68 CAATGGCGCCGAAAGCAGAGAAGAAGCCCGCTGAGAAGAAACCAGCCTCCGAGAAGCCGG 127
Query 128 TAGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAAGCCGGCAAGA 187
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 128 TGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGGCCGGAAAGA 187
Query 188 AACTCCCGAAGGAAGCCGGGGCCGGCGGCGATaagaagaagaagatgaagaagaagaGTG 247
||||||||||||| || || || || || || |||||||| ||||||||||||||||||
Sbjct 188 AACTCCCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAAGAAGAAGAGTA 247
Query 248 TGGAAACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATATTGGTA 307
| || |||||||||||||||||||||||||| || || ||||||||||| ||||| || |
Sbjct 248 TCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAA 307
Query 308 TTTCAAGCAAGGCTATGGGTATTATGAACAGTTTCATCAACGACATCTTCGAGAAA-TTG 366
| |||||||| || ||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 308 TCTCAAGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTG 367
Query 367 GCATCG-GAATCTTCAAAGCTCGCTAGGTATAACAAGAAGCCGACGATTACTTCTCGGGA 425
| || || | || ||||| || ||||| || ||||| || || || || || |||||
Sbjct 368 -C-TCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGA 425
Query 426 GATTCAGACTGCTGTTAGACTCGTTCTTCCTGGTGAGCTCGCTAAACACGCTGTTTCTGA 485
||||||||||||||| ||| | || |||||||| ||| | || || || |||||||||||
Sbjct 426 GATTCAGACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAGCATGCTGTTTCTGA 485
Query 486 AGGAACCAAGGCTGTTACCAAATTCACAAGCTCTTGAATTAGTAAATTAGGGTTT 540
|| || ||||| |||||||||||||| ||||||||||| | | | |||||||||
Sbjct 486 GGGGACTAAGGCGGTTACCAAATTCACCAGCTCTTGAATAATTGAGTTAGGGTTT 540
> Ahg333229 jgi|Araly1|333229|fgenesh1_pm.C_scaffold_189000001
Length=414
Score = 385 bits (208), Expect = 3e-106
Identities = 334/396 (84%), Gaps = 4/396 (1%)
Strand=Plus/Plus
Query 129 AGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAAGCCGGCAAGAA 188
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 21 AGAAGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGGCCGGAAAGAA 80
Query 189 ACTCCCGAAGGAAGCCGGGGCCGGCGGCGATaagaagaagaagatgaagaagaagaGTGT 248
|||||||||||| || || || || || || |||||||| |||||||||||||||||| |
Sbjct 81 ACTCCCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAAGAAGAAGAGTAT 140
Query 249 GGAAACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATATTGGTAT 308
|| |||||||||||||||||||||||||| || || ||||||||||| ||||| || ||
Sbjct 141 CGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAAT 200
Query 309 TTCAAGCAAGGCTATGGGTATTATGAACAGTTTCATCAACGACATCTTCGAGAAA-TTGG 367
|||||||| || ||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 201 CTCAAGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTG- 259
Query 368 CATCG-GAATCTTCAAAGCTCGCTAGGTATAACAAGAAGCCGACGATTACTTCTCGGGAG 426
| || || | || ||||| || ||||| || ||||| || || || || || ||||||
Sbjct 260 C-TCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGAG 318
Query 427 ATTCAGACTGCTGTTAGACTCGTTCTTCCTGGTGAGCTCGCTAAACACGCTGTTTCTGAA 486
|||||||||||||| ||| | || |||||||| ||| | || || || |||||||||||
Sbjct 319 ATTCAGACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAGCATGCTGTTTCTGAG 378
Query 487 GGAACCAAGGCTGTTACCAAATTCACAAGCTCTTGA 522
|| || ||||| || || |||||||| |||||||||
Sbjct 379 GGGACTAAGGCCGTCACGAAATTCACCAGCTCTTGA 414
> Ahg482740 jgi|Araly1|482740|fgenesh2_kg.4__1800__AT2G37470.1
Length=488
Score = 287 bits (155), Expect = 8e-77
Identities = 228/263 (87%), Gaps = 6/263 (2%)
Strand=Plus/Plus
Query 253 ACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATATTGGTATTTCA 312
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 128 ACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCT 187
Query 313 AGCAAGGCTATGGGTATTATGAACAGTTTCATCAACGACATCTTCGAGAAA-TTGGCATC 371
| || |||||||| |||||||||||||||||||| || |||||||||||| ||| | ||
Sbjct 188 GGGAAAGCTATGGGAATTATGAACAGTTTCATCAATGATATCTTCGAGAAACTTG-C-TC 245
Query 372 -GGAATCTTCAAAGCTCGCTAGGTATAACAAGAAGCCGACGATTACTTCTCGGGAGATTC 430
|||||| |||||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct 246 AGGAATCGTCAAAGCTCGCTAGATACAACAAGAAGCCGACGATTACATCGAGGGAGATTC 305
Query 431 AGACTGCTGTTAGACTCGTTCTT-CCTGGTGAGCTCGCTAAACACGCTGTTTCTGAAGGA 489
| |||||||| ||||| || || ||||| || |||||||| || || ||||| |||||
Sbjct 306 AAACTGCTGTGAGACTTGTG-TTGCCTGGAGAACTCGCTAAGCATGCGGTTTCAGAAGGC 364
Query 490 ACCAAGGCTGTTACCAAATTCAC 512
|| ||||| ||||||||||||||
Sbjct 365 ACGAAGGCGGTTACCAAATTCAC 387
> Ahg898300 jgi|Araly1|898300|Al_scaffold_0005_2266
Length=294
Score = 252 bits (136), Expect = 3e-66
Identities = 242/292 (83%), Gaps = 11/292 (4%)
Strand=Plus/Plus
Query 225 gaagaagat-gaagaagaagaGTGTGGAAACTTACAAGATCTACATCTTCAAGGTTCTGA 283
|||||| || ||||||||| | | || || |||||||||||||||||||||||| |||
Sbjct 3 GAAGAA-ATCGAAGAAGAACA---TCGAGACGTACAAGATCTACATCTTCAAGGTTTTGA 58
Query 284 AACAAGTTCATCCAGATATTGGTATTTCAAGCAAGGCTATGGGTATTATGAACAGTTTCA 343
| ||||||||||||||||| || || || | || || ||||| || |||||||||||||
Sbjct 59 AGCAAGTTCATCCAGATATCGGAATCTCTGGGAAAGCGATGGGAATCATGAACAGTTTCA 118
Query 344 TCAACGACATCTTCGAGAAATTGGCATC-GGAATCTTCAAAGCTCG-CTAGGTATAACAA 401
|||||||||||||||||||| | || || |||||| || | | | ||||||| |||||
Sbjct 119 TCAACGACATCTTCGAGAAACTCGC-TCAGGAATCATCGC-GATTGGCTAGGTACAACAA 176
Query 402 GAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAGACTCGTTCTT-CCTGGTG 460
|||||||||||| ||||||||||| |||||||| || || ||||| || || ||||| |
Sbjct 177 GAAGCCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTG-TTGCCTGGAG 235
Query 461 AGCTCGCTAAACACGCTGTTTCTGAAGGAACCAAGGCTGTTACCAAATTCAC 512
| ||| | |||||||||||||||||||| || ||||| ||||| ||||||||
Sbjct 236 AACTCTCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACAAAATTCAC 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26762287734
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5