BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G45990.1
Length=402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323258 jgi|Araly1|323258|fgenesh1_pm.C_scaffold_5000802 383 6e-106
Ahg484979 jgi|Araly1|484979|fgenesh2_kg.5__971__AT3G46000.1 241 4e-63
> Ahg323258 jgi|Araly1|323258|fgenesh1_pm.C_scaffold_5000802
Length=345
Score = 383 bits (207), Expect = 6e-106
Identities = 311/357 (87%), Gaps = 24/357 (7%)
Strand=Plus/Plus
Query 1 ATGGTTTTGCATGATGACTGCA-AGCT-AACATTCTTGGAACTGAAGGAGAGACGAACAT 58
|||||| |||||||||| |||| | || || ||||||||||||||||||||| |||||||
Sbjct 1 ATGGTTGTGCATGATGATTGCATA-CTCAA-ATTCTTGGAACTGAAGGAGAGTCGAACAT 58
Query 59 TCCGTTCCATAGTCTACAAGATTGAGGACAACATGCAAGTGATTGTAGAGAAACATCACT 118
|||||||||||||||||||||| ||||||||||||||||||||| ||||| | |
Sbjct 59 TCCGTTCCATAGTCTACAAGATAGAGGACAACATGCAAGTGATTATAGAG----A--A-- 110
Query 119 ACaaaaaaaTGCATGGCGAACGTGAACAATCATATGAGGAGTTTGCAAACAGTCTTCCAG 178
|| | ||| ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 111 AC-------T---TGGTGAACGTGAACAATCATATGAGGACTTTGTAAACAGTCTTCCAG 160
Query 179 CTGATGAATGCCGATATGCCATTTTGGATATCGAATTCGTCCCAGGGGAGAGAAAGATTT 238
|||||||||| |||||||||||||| ||| ||||||| ||||| |||||||||||||||
Sbjct 161 CTGATGAATGTCGATATGCCATTTTTGATTTCGAATTTATCCCATGGGAGAGAAAGATTT 220
Query 239 GCTTCATCGCGTGGTCTCCATCCACTGCCAAG-ATGAGAAAGAAGATGATTTACTCGAGC 297
||||||||||||||||||| |||||| || ||||||||||||||||||||| |||||
Sbjct 221 GCTTCATCGCGTGGTCTCCGGAAACTGCC-AGAATGAGAAAGAAGATGATTTACGCGAGC 279
Query 298 ACTAAGGATAGGTTCAAGAGAGAACTAGATGGAATTCAAGTGGAGTTTCACGCAACT 354
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 280 TCTAAGGATAGGTTCAAGAGAGAGCTAGATGGAATTCAAGTGGAGTTTCATGCAACT 336
> Ahg484979 jgi|Araly1|484979|fgenesh2_kg.5__971__AT3G46000.1
Length=661
Score = 241 bits (130), Expect = 4e-63
Identities = 332/421 (79%), Gaps = 47/421 (11%)
Strand=Plus/Plus
Query 1 ATGGTTTTGCATGATGACTGCAAGCTAACATTCT-TGGAACTGAAGGAGAGACGAACATT 59
|||| | |||||||||| |||||||||| ||| | |||||||||||| || |||||||||
Sbjct 71 ATGGCTGTGCATGATGATTGCAAGCTAAAATT-TATGGAACTGAAGGCGAAACGAACATT 129
Query 60 CCGTTCCATAGTCTACAAGATTGAGGACAACATGCAAGTGATTGTAGAGAAACATCACTA 119
|||| ||||||||||||||||||||||||| | ||||||||||||||| | | |
Sbjct 130 CCGTACCATAGTCTACAAGATTGAGGACAA-A--CAAGTGATTGTAGAG----A--A--A 178
Query 120 CaaaaaaaTGCATGGCGAACGTGAACAATCATATGAGGAGTTTGCAAAC-AGTCTTCCAG 178
| | | || |||| ||||||||||||||| || ||||| | | ||||||||||
Sbjct 179 C-------T-C--GGTGAACCTGAACAATCATATGATGACTTTGC-AGCAAGTCTTCCAG 227
Query 179 CTGATGAATGCCGATA-TGCCATTT-TGGATATCGAATTCGTC-C--CAGG-G----G-- 226
|||||||||| ||||| || ||||| | ||| |||| || ||| | | || | |
Sbjct 228 CTGATGAATGTCGATATTG-CATTTAT-GATTTCGACTTTGTCACTGC-GGAGAACTGCC 284
Query 227 AG-AGA--AAGAT-TTGCTTCATCGCGTGGTCTCCATCCACTGC-CAAGATGAGAAAGAA 281
|| ||| ||||| || |||||| || |||||||| |||||| ||| ||||| | ||
Sbjct 285 AGAAGAGCAAGATATT-CTTCATTGCATGGTCTCCGGACACTGCTAAAG-TGAGAGACAA 342
Query 282 GATGATTTACTCGAGCACTAAGGATAGGTTCAAGAGAGAACTAGATGGAATTCAAGTGGA 341
|||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 343 GATGATTTACGCTAGCTCTAAGGATAGGTTCAAGAGAGAACTAGATGGAATTCAGGTGGA 402
Query 342 GTTTCACGCAACTGATCTAACCGATATAAGTCTTGATGCTATCAGACGCCGCATCAACTA 401
|||| || || |||| |||||| || ||||||||| | ||| | |||||| ||||||
Sbjct 403 ACTTCAAGCTACCGATCCAACCGAAATGGGTCTTGATGTTTTCAAAAGCCGCACCAACTA 462
Query 402 A 402
|
Sbjct 463 A 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14422812642
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5