BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46000.1
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484979 jgi|Araly1|484979|fgenesh2_kg.5__971__AT3G46000.1 907 0.0
Ahg484981 jgi|Araly1|484981|fgenesh2_kg.5__973__AT3G46010.1 320 1e-86
Ahg495305 jgi|Araly1|495305|fgenesh2_kg.8__1121__AT5G52360.1 132 5e-30
Ahg480552 jgi|Araly1|480552|fgenesh2_kg.3__3253__AT2G16700.1 95.3 7e-19
> Ahg484979 jgi|Araly1|484979|fgenesh2_kg.5__971__AT3G46000.1
Length=661
Score = 907 bits (491), Expect = 0.0
Identities = 626/685 (91%), Gaps = 34/685 (5%)
Strand=Plus/Plus
Query 128 TCTTCTTCATTTCACCAGGAACTTTTATTTGAAATCGGTTTGATTTAGCCATGGCAAACG 187
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||
Sbjct 1 TCTTCTTCATTTCACCAAGAA-TTTTCTTTGAAATCGGTTTGATTTAGCCATGGCTAACG 59
Query 188 CGGCATCGGGAATGGCTGTGCATGATGATTGCAAGCTGAAATTTATGGAACTGAAGGCGA 247
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 CGGCGTCGGGGATGGCTGTGCATGATGATTGCAAGCTAAAATTTATGGAACTGAAGGCGA 119
Query 248 AAAGAACATTCCGTACCATAGTCTACAAGATTGAGGATAAGCAAGTGATTGTAGAGAAAC 307
|| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 120 AACGAACATTCCGTACCATAGTCTACAAGATTGAGGACAAACAAGTGATTGTAGAGAAAC 179
Query 308 TCGGTGAACCTGAACAATCATATGATGACTTTGCAGCTAGTCTTCCAGCTGATGATTGCC 367
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 180 TCGGTGAACCTGAACAATCATATGATGACTTTGCAGCAAGTCTTCCAGCTGATGAATGTC 239
Query 368 GATATTGCATTTACGATTTCGACTTTGTCACTGCGGAGAACTGCCAGAAGAGCAAGATCT 427
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 GATATTGCATTTATGATTTCGACTTTGTCACTGCGGAGAACTGCCAGAAGAGCAAGATAT 299
Query 428 TCTTCATTGCATGGTCTCCGGACACTGCCAAAGTGAGAGACAAGATGATTTACGCGAGCT 487
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 300 TCTTCATTGCATGGTCTCCGGACACTGCTAAAGTGAGAGACAAGATGATTTACGCTAGCT 359
Query 488 CTAAAGATAGGTTCAAGAGAGAACTAGATGGAATTCAAGTGGAACTTCAAGCTACTGATC 547
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 360 CTAAGGATAGGTTCAAGAGAGAACTAGATGGAATTCAGGTGGAACTTCAAGCTACCGATC 419
Query 548 CAACAGAAATGGGTCTTGATGTTTTCAAAAGCCGCACCAACTAAGTAAAACAAAACCCTG 607
|||| |||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 420 CAACCGAAATGGGTCTTGATGTTTTCAAAAGCCGCACCAACTAAG-AAAA-A------T- 470
Query 608 TAAGGGCATTTGAATAAGTTTGGTTTCTGGAGTGAATATGTTTCCTCTGACTGTTATGAA 667
| | | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 T--G---A----A-TAAGTTTGGTTTCTGGAGTGAATATGTTTCCTCTGACTGTTATGAA 520
Query 668 AACTTTTTAACACCTTCAACTTCATTCTACTTGGTATTATTGTATGTCTTTGATGTGTTA 727
|||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 521 AACTTTTTAACA-----A-CTTCATTCTACTTGGTATTATTGTCTGTCTTTGATGTGTTA 574
Query 728 TGTGTGCCTTGTGATGGTTTTCAATTAGTTTTACATGTACAATACTTGAAATCAGATT-G 786
|||| ||||||||||||||||||||||||| | || ||||||||||||||||||||| |
Sbjct 575 TGTGCGCCTTGTGATGGTTTTCAATTAGTTA-ATATATACAATACTTGAAATCAGATTTG 633
Query 787 -T-T----GCTAGGCTTCAAGCCTT 805
| | |||||||||||||||||
Sbjct 634 GTGTTATTGCTAGGCTTCAAGCCTT 658
> Ahg484981 jgi|Araly1|484981|fgenesh2_kg.5__973__AT3G46010.1
Length=813
Score = 320 bits (173), Expect = 1e-86
Identities = 455/581 (78%), Gaps = 60/581 (10%)
Strand=Plus/Plus
Query 37 aaaagaaacagtgaagaagaaaaaaaaGAAGGTCATTTTC-ATTTTCTCCATTTGATTTT 95
|||||||| | ||||||||||||||| || || | | | |||||| | |||| |
Sbjct 15 AAAAGAAATTGAGAAGAAGAAAAAAAA-AAAGTGA---CCGA-ATTCTCC-GTCGATTGT 68
Query 96 TGCCGACC-GGAGAAAATATCTTCTTGCCGTCTTCTTC-TTCATTTCACCAGGAACTTTT 153
|||| || |||| |||||||||||| | ||||| || ||| || || | ||| |||
Sbjct 69 AGCCG-CCGGGAG-AAATATCTTCTT--CTTCTTCCTCTTTCGTTAAACAACGAA-TTTG 123
Query 154 ATTTGA-AATCGGTTTGATTT--AGCCATGGCAAACGCGGCATCGGGAATGGCTGTGCAT 210
| ||| | | || || ||| ||||||||| ||||| ||||| |||||||||||||||
Sbjct 124 CTCTGATACT-AGTGTG-TTTCCAGCCATGGCGAACGCAGCATCTGGAATGGCTGTGCAT 181
Query 211 GATGATTGCAAGCTGAAATTTATGGAACTGAAGGCGAAAAGAACATTCCGTACCATAGTC 270
|||||||||||||||| |||| ||||||||||||||||||| ||| |||| ||| ||
Sbjct 182 GATGATTGCAAGCTGAGATTTCTGGAACTGAAGGCGAAAAGGACACACCGTTTCATTGTT 241
Query 271 TACAAGATTGAGGATAAGCAAGTGATTGTAGAGAAACTCGG-TGAACCTGAACAATCATA 329
||||||||||||| || ||| | | | || || | || || || | | |
Sbjct 242 TACAAGATTGAGG---AG-AAG-CA--G-A-AGCAAGT-GGTTG---TTG----A-GA-A 282
Query 330 TGATGACTTTGCAGCTAGTCTTCCAGCTGATGATTGCCGATATTGC-ATTTACGA-TTTC 387
| | ||||| | |||||||||||||||| ||||| || ||| |||||||| |||
Sbjct 283 --A-G---TTGCA--T-GTCTTCCAGCTGATGAATGCCGTTA-TGCAATTTACGACTTT- 331
Query 388 GACTTTGTCACTGCGGAGAACTGCCAGAAGAGCAAGATCTTCTTCATTGCATGGT-CTCC 446
|||||||||||||| |||||||||||||||||||||||||||||||| || |||| | ||
Sbjct 332 GACTTTGTCACTGCTGAGAACTGCCAGAAGAGCAAGATCTTCTTCATCGCGTGGTGC-CC 390
Query 447 GGACACT-GCCAAAGTGAGA-GACAAGATGATTTACGCGAGCTCTAAAGATAGGTTCAAG 504
||||| | || || |||||| | ||||||||| ||||||||||||||||| |||||||||
Sbjct 391 GGACA-TAGCGAAGGTGAGAAG-CAAGATGATCTACGCGAGCTCTAAAGACAGGTTCAAG 448
Query 505 AGAGAACTAGATGGAATTCAAGTGGAACTTCAAGCTACTGATCCAACAGAAATGGGTCTT 564
|| |||||||| ||||||||||| || ||||| || || |||||||| || |||| |||
Sbjct 449 AGGGAACTAGACGGAATTCAAGTAGAGCTTCAGGCAACCGATCCAACTGAGATGGATCTC 508
Query 565 GATGTTTTCAAAAGCCGCACCAACTAAGTAAAACAAAACCC 605
|||||||||| |||||| |||||||| ||| |||||||
Sbjct 509 GATGTTTTCAGAAGCCGTGCCAACTAA--AAAGTAAAACCC 547
> Ahg495305 jgi|Araly1|495305|fgenesh2_kg.8__1121__AT5G52360.1
Length=749
Score = 132 bits (71), Expect = 5e-30
Identities = 286/385 (74%), Gaps = 34/385 (9%)
Strand=Plus/Plus
Query 178 ATGGCAAACGCGGCATCGGGAATGGCTGTGCATGATGATTGCAAGCTGAAATTTATGGAA 237
||||| |||||||| ||||| ||||| ||| | || || || |||||||| ||| ||||
Sbjct 113 ATGGCGAACGCGGCCTCGGGGATGGCGGTGGAGGACGAATGTAAGCTGAAGTTTTTGGAG 172
Query 238 CTGAAGGCGAAAAG-AACAT-TCCGTACCATAGTCTACAAGATTGA-GGATAAGCAAGTG 294
|| || ||||| || ||| | | || |||| | | || ||| || ||| || ||||||
Sbjct 173 CTAAAAGCGAAGAGAAAC-TATAGGT-TCATAATATTCAGGATAGATGGACAA-CAAGTG 229
Query 295 ATTGTAGAGAAA-CTCGGTGAA--CCTGA--ACAATCATATGATGACTTTGCAGCTAGT- 348
| ||||| ||| || || ||| || || | || | || || || ||| | | | |
Sbjct 230 GTGGTAGA-AAAGCT-GG-GAAGCCCCGAGGAGAA-C-TACGACGA-TTT-CTCCAATTC 282
Query 349 -CTTCCAG-CTGATGATTGCCGATATTGC-ATTTACGATTTCGACTTTGTCACTGCGGAG 405
|| || | | |||| ||||| || || |||| || |||||||| |||||| |||
Sbjct 283 CCTACC-GCCAAATGAATGCCGCTA-CGCTGTTTATGACTTCGACTTCACCACTGCTGAG 340
Query 406 AACTGCCAGAAGAGCAAGATCTTCTTCATTGCATGGTCTCCGGA--CACTGCCAAAGTGA 463
||||||||||||||||||||||||||||| || |||| ||||| || | | | ||| |
Sbjct 341 AACTGCCAGAAGAGCAAGATCTTCTTCATCGCGTGGTGACCGGATTCA-T-CTAGAGTAA 398
Query 464 GAGAC-AAGATGATTTACGCGAGCTCTAAAG-ATAGGTTCAAGAGAGAACTAGATGGAAT 521
| || |||||| | || |||||||| |||| | ||||||||||||||| | ||||| ||
Sbjct 399 G-GATGAAGATGGTGTATGCGAGCTC-AAAGGACAGGTTCAAGAGAGAATTGGATGGTAT 456
Query 522 TCAAGTGGAACTT-CAAGCTACTGA 545
||| ||||| || ||||| |||||
Sbjct 457 TCAGGTGGAG-TTACAAGCCACTGA 480
> Ahg480552 jgi|Araly1|480552|fgenesh2_kg.3__3253__AT2G16700.1
Length=735
Score = 95.3 bits (51), Expect = 7e-19
Identities = 147/190 (77%), Gaps = 20/190 (11%)
Strand=Plus/Plus
Query 382 GATTTCGACTTTGTCACTG-CGGAGAACTGCCAG-AAGAGCAAGATCTTCTTCATTGCAT 439
||||||||||| ||||| | | || ||||||| | |||||||||||||||||||||||||
Sbjct 319 GATTTCGACTTCGTCACCGTC-GATAACTGCC-GCAAGAGCAAGATCTTCTTCATTGCAT 376
Query 440 GGTCTCCGGA--CACTGCCAAAG-TGAGAGACAA-GATGATT-TACGCGA-GCTCTAAAG 493
|||| ||||| || | | |||| | || | ||| ||| ||| ||||| | | || ||||
Sbjct 377 GGTCACCGGAGGCA-T-C-AAAGATAAGGG-CAAAGAT-ATTGTACGCAACG-TCGAAAG 430
Query 494 ATAGGTTCAAGAGAGAACTAGATGGAATTCA--AGTGGAACTTCAAGCTACTGATCCAAC 551
|| || | | ||||| | || || ||||| | || | |||||||| |||||||| ||
Sbjct 431 ATGGGCTGAGGAGAGTGTTGGAAGGGATTCACTA-TG-AGCTTCAAGCCACTGATCCGAC 488
Query 552 AGAAATGGGT 561
|| ||||||
Sbjct 489 GGAGATGGGT 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32709462786
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5