BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46010.2
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484981 jgi|Araly1|484981|fgenesh2_kg.5__973__AT3G46010.1 719 0.0
Ahg495305 jgi|Araly1|495305|fgenesh2_kg.8__1121__AT5G52360.1 158 9e-38
> Ahg484981 jgi|Araly1|484981|fgenesh2_kg.5__973__AT3G46010.1
Length=813
Score = 719 bits (389), Expect = 0.0
Identities = 499/548 (91%), Gaps = 23/548 (4%)
Strand=Plus/Plus
Query 341 GCATGTCTTCCAGCTGATGAATGCCGTTACGCCATTTACGATTTTGACTTTGTAACTGCT 400
||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||
Sbjct 287 GCATGTCTTCCAGCTGATGAATGCCGTTATGCAATTTACGACTTTGACTTTGTCACTGCT 346
Query 401 GAGAATTGCCAGAAGAGCAAGATCTTCTTCATCGCGTGGTGTCCGGATATTGCTAAGGTG 460
||||| ||||||||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct 347 GAGAACTGCCAGAAGAGCAAGATCTTCTTCATCGCGTGGTGCCCGGACATAGCGAAGGTG 406
Query 461 AGAAGCAAGATGATCTACGCGAGCTCCAAGGACAGGTTCAAGAGGGAACTAGATGGGATT 520
|||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||
Sbjct 407 AGAAGCAAGATGATCTACGCGAGCTCTAAAGACAGGTTCAAGAGGGAACTAGACGGAATT 466
Query 521 CAAGTAGAGCTACAGGCAACTGATCCAACAGAGATGGATCTCGATGTTTTCAGGAGCCGT 580
||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 467 CAAGTAGAGCTTCAGGCAACCGATCCAACTGAGATGGATCTCGATGTTTTCAGAAGCCGT 526
Query 581 GCCAACTAAAAAGTAAAAACCAAAGTTTATTATCATCATCCCCTTGAAAGATCTATTCTC 640
|||||||||||||||||| |||||| ||||| | |||||||||||||||||||||||
Sbjct 527 GCCAACTAAAAAGTAAAACCCAAAG---ATTAT--T-ATCCCCTTGAAAGATCTATTCTC 580
Query 641 TTATTCTGTTATTTTTGAGTGATGGTACTGGTACTTGATTATGTTTTTACATTGTGTTGT 700
|||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 581 TTATTCTGTTATTTTTGAGTGATGGTAC---T--TT-ATTATGTTTTTACATTGTGTTGT 634
Query 701 GAAGTTATGAACCTATAAACAACTTCATTCTATCGGTGTTTCGGTC-TTGTGTTCGATGT 759
||| |||||||| | ||||||||||||||||||||||||| ||| || ||||| ||||
Sbjct 635 CAAGGTATGAACC--T-AACAACTTCATTCTATCGGTGTTTC-GTCATT-TGTTC-ATGT 688
Query 760 TGTCTTTGGTTT-TAAAATGGTGTGTAAGGACCCCAAATCGTCTATTGAAGATGAACCCT 818
| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 TATCTTTGGTTTCT-AAATGGTGTGTAAGGACCCCAAATCGTCTATTGAAGATGAACCCT 747
Query 819 TTTAGGTATATCATTGATGAAATGGATGATTAAAAGTTTCTCTCACATTTGTATGAAACA 878
||| ||||| |||| ||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct 748 TTTGGGTAT--CATTTATGAAATGGATGATTGAAAGTTTCCCTCACAATTGTATGAAACA 805
Query 879 ACTGTCTA 886
||||||||
Sbjct 806 ACTGTCTA 813
Score = 230 bits (124), Expect = 2e-59
Identities = 132/136 (97%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 173 GCGAACGCGGCATCTGGAATGGCTGTGCATGATGATTGCAAGCTGAGATTTCTGGAACTG 232
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 GCGAACGCAGCATCTGGAATGGCTGTGCATGATGATTGCAAGCTGAGATTTCTGGAACTG 211
Query 233 AAGGCTAAAAGGACACACCGTTTCATAGTTTACAAGATTGAGGAGAAGCAGAAGCAAGTT 292
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 212 AAGGCGAAAAGGACACACCGTTTCATTGTTTACAAGATTGAGGAGAAGCAGAAGCAAGTG 271
Query 293 GTTGTTGAGAAAGTTG 308
||||||||||||||||
Sbjct 272 GTTGTTGAGAAAGTTG 287
> Ahg495305 jgi|Araly1|495305|fgenesh2_kg.8__1121__AT5G52360.1
Length=749
Score = 158 bits (85), Expect = 9e-38
Identities = 173/214 (81%), Gaps = 12/214 (6%)
Strand=Plus/Plus
Query 357 ATGAATGCCGTTACGCCATTTACGATTTTGACTTTGTAACTGCTGAGAATTGCCAGAAGA 416
|||||||||| ||||| |||| || || ||||| ||||||||||| ||||||||||
Sbjct 294 ATGAATGCCGCTACGCTGTTTATGACTTCGACTTCACCACTGCTGAGAACTGCCAGAAGA 353
Query 417 GCAAGATCTTCTTCATCGCGTGGTGTCCGGAT--ATTGCTA-AGGTGAGAA-GCAAGATG 472
||||||||||||||||||||||||| |||||| || ||| || | || | | ||||||
Sbjct 354 GCAAGATCTTCTTCATCGCGTGGTGACCGGATTCAT--CTAGAG-TAAGGATG-AAGATG 409
Query 473 ATCTACGCGAGCTCCAAGGACAGGTTCAAGAGGGAACTAGATGGGATTCAAGTAGAGCTA 532
| || |||||||| ||||||||||||||||| ||| | ||||| ||||| || ||| ||
Sbjct 410 GTGTATGCGAGCTCAAAGGACAGGTTCAAGAGAGAATTGGATGGTATTCAGGTGGAGTTA 469
Query 533 CAGGCAACTGATCCAA-CAGAGATG-GATCTCGA 564
|| || ||||| || | | |||||| | ||||||
Sbjct 470 CAAGCCACTGACCCGAGC-GAGATGAG-TCTCGA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33548166960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5