BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G46020.1

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937295 jgi|Araly1|937295|scaffold_501486.1                        455    2e-127


> Ahg937295 jgi|Araly1|937295|scaffold_501486.1
Length=352

 Score =  455 bits (246),  Expect = 2e-127
 Identities = 298/324 (92%), Gaps = 0/324 (0%)
 Strand=Plus/Plus

Query  96   TAAAGATGGCTAAGAGAATCTCAGCTCAACTCTTCGTAAGCAGGTTATCTGCTTATACCA  155
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  19   TAAAGATGGCTAAAAGAATCTCAGCTCAACTCTTCGTAAGCAGGTTATCTGCTTATACTA  78

Query  156  CAGATCAATCTCTGAGGCAATTGTTCTCTCCTTTTGGTCAAATCAAAGAAGCTCGGCTTA  215
            |||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||
Sbjct  79   CAGATCAATCTCTGAGACAATTGTTTTCTCCTTTTGGTCAGATTAAAGAAGCTCGGCTTA  138

Query  216  TTAGAGATTCAGAAACACAGAGACCTAAAGGATTCGGCTTTATCACCTTCGATTCTGAAG  275
            |||||||||| |||||||||||||| ||||| ||||||||||| || || || ||||| |
Sbjct  139  TTAGAGATTCTGAAACACAGAGACCAAAAGGGTTCGGCTTTATTACATTTGAGTCTGAGG  198

Query  276  ATGATGCACGAAAGGCATTGAAAAGCTTAGATGGGAAGATTGTAGATGGTAGACTAATAT  335
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  199  ATGATGCACGAAAGGCATTGAAAAGCTTAGATGGGAAGATCGTAGATGGTAGACTAATAT  258

Query  336  TTGTTGAAGTAGCCAAGAACGCAGAGGAAGTGAGAGCGGGTATTAACAGTAATAAAGCCG  395
            |||| ||||| ||||||| | |||||||||||| | ||| |||||||||||| |||||||
Sbjct  259  TTGTGGAAGTTGCCAAGAGCTCAGAGGAAGTGACAACGGATATTAACAGTAAGAAAGCCG  318

Query  396  AGGACCGCGGGTAATTCAGGCATC  419
            |||||||||| |||||  ||||||
Sbjct  319  AGGACCGCGGATAATTTGGGCATC  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21061885128


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5