BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46030.1
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1 767 0.0
Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1 627 4e-179
Ahg496128 jgi|Araly1|496128|fgenesh2_kg.8__1944__AT5G59910.1 429 1e-119
Ahg333229 jgi|Araly1|333229|fgenesh1_pm.C_scaffold_189000001 412 1e-114
Ahg489144 jgi|Araly1|489144|fgenesh2_kg.6__2278__AT5G22880.1 394 5e-109
Ahg933338 jgi|Araly1|933338|scaffold_401326.1 355 2e-97
Ahg482740 jgi|Araly1|482740|fgenesh2_kg.4__1800__AT2G37470.1 259 2e-68
Ahg898300 jgi|Araly1|898300|Al_scaffold_0005_2266 252 3e-66
Ahg939636 jgi|Araly1|939636|scaffold_600180.1 243 2e-63
> Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1
Length=565
Score = 767 bits (415), Expect = 0.0
Identities = 491/527 (93%), Gaps = 7/527 (1%)
Strand=Plus/Plus
Query 58 GAAAC-TTTTTTCGTGTGAAGAAAATGGCACCAAAGGCAGAGAAGAAGCCGGCAGAGAAG 116
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 43 GAAACTTTTTTTCTTGTGAAGAAAATGGCACCAAAGGCAGAGAAGAAGCCGGCAGAGAAG 102
Query 117 AAACCAGTAGAGGAGAAATCAAAAGCCGAGAAAGCTCCTGCAGAGAAGAAACCAAAAGCC 176
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 103 AAACCAGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAAGCC 162
Query 177 GGCAAGAAACTCCCGAAGGAAGCCGGTGCCGGCGGCGATaagaagaagaagatgaagaag 236
||||||||||||||||| |||||||| |||||||| || |||||||||||||||||||||
Sbjct 163 GGCAAGAAACTCCCGAAAGAAGCCGGCGCCGGCGGAGACAAGAAGAAGAAGATGAAGAAG 222
Query 237 aagaGTGTTGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGAT 296
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 223 AAGAGTGTTGAGACATACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTTCATCCAGAT 282
Query 297 ATTGGTATTTCAAGCAAAGCTATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAG 356
||||| || ||||||||||||||||| || |||||||||||||| ||||| ||||| |||
Sbjct 283 ATTGGAATCTCAAGCAAAGCTATGGGAATCATGAACAGTTTCATTAACGATATCTTCGAG 342
Query 357 AAATTGGCATCGGAATCGTCGAAGCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCT 416
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 343 AAATTGGCATCGGAATCGTCGAAGCTTGCTAGGTATAATAAGAAGCCAACGATTACTTCT 402
Query 417 CGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGGTGAGCTTGCGAAACATGCTGTT 476
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 403 AGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGGTGAGCTCGCGAAACACGCTGTT 462
Query 477 TCTGAAGGAACTAAGGCGGTGACTAAGTTTACTAGCTCTTGAATTGTG-GA-TCTTGTTG 534
||||||||||||||||| |||||||| || || ||||||||||||||| | ||||||||
Sbjct 463 TCTGAAGGAACTAAGGCTGTGACTAAATTCACCAGCTCTTGAATTGTGTGGGTCTTGTTG 522
Query 535 AAATCGATGTTTGTAAAATTAGGGTTTTTTAGATTTGATGGTTGTTG 581
|| |||| || ||||||||||||||||| |||||||||||||||||
Sbjct 523 AA-TCGAA-TT-GTAAAATTAGGGTTTTT-AGATTTGATGGTTGTTG 565
> Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1
Length=673
Score = 627 bits (339), Expect = 4e-179
Identities = 396/424 (93%), Gaps = 2/424 (0%)
Strand=Plus/Plus
Query 96 GAGAAGAAGCCGGCAG-AGAAGAAACCAGTAGAGGAGAAATCAAAAGCCGAGAAAGCTCC 154
|||||||| || || | | |||||||||||||||||||||| |||||||||||||||||
Sbjct 104 GAGAAGAAACCAGCCGCCG-AGAAACCAGTAGAGGAGAAATCCAAAGCCGAGAAAGCTCC 162
Query 155 TGCAGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAGGAAGCCGGTGCCGGCGGCGA 214
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 163 GGCAGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAAGAAGCCGGCGCCGGCGGCGA 222
Query 215 TaagaagaagaagatgaagaagaagaGTGTTGAGACGTACAAGATCTACATCTTCAAGGT 274
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 223 CAAAAAGAAGAAGATGAAGAAGAAGAGTGTCGAGACTTACAAGATCTACATCTTCAAGGT 282
Query 275 TCTGAAACAAGTTCATCCAGATATTGGTATTTCAAGCAAAGCTATGGGGATTATGAACAG 334
|||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 283 TCTGAAGCAAGTTCATCCAGATATTGGTATTTCGAGCAAAGCTATGGGAATCATGAACAG 342
Query 335 TTTCATCAACGACATCTTTGAGAAATTGGCATCGGAATCGTCGAAGCTCGCGAGGTATAA 394
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 343 TTTCATCAACGATATCTTCGAGAAATTGGCATCGGAATCGTCGAAGCTTGCGAGGTATAA 402
Query 395 TAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGG 454
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 403 TAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGG 462
Query 455 TGAGCTTGCGAAACATGCTGTTTCTGAAGGAACTAAGGCGGTGACTAAGTTTACTAGCTC 514
||||||||||||||| ||||||||||| ||||||||||||||||| || || || |||||
Sbjct 463 TGAGCTTGCGAAACACGCTGTTTCTGAGGGAACTAAGGCGGTGACCAAATTCACCAGCTC 522
Query 515 TTGA 518
||||
Sbjct 523 TTGA 526
> Ahg496128 jgi|Araly1|496128|fgenesh2_kg.8__1944__AT5G59910.1
Length=698
Score = 429 bits (232), Expect = 1e-119
Identities = 352/410 (86%), Gaps = 8/410 (2%)
Strand=Plus/Plus
Query 115 AGAAACCAGTAGAGGAGAAATCAAAAGCCGAGAAAGCTCCTGCAGAGAAGAAACCAAAAG 174
|||| || || ||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 119 AGAAGCCGGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGG 178
Query 175 CCGGCAAGAAACTCCCGAAGGAAGCCGGTGCCGGCGGCGATaagaagaagaagatgaaga 234
|||| ||||||||||||||||| || ||||| || || || |||||||| ||||||||||
Sbjct 179 CCGGAAAGAAACTCCCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAAGA 238
Query 235 agaagaGTGTTGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAG 294
|||||||| | ||||| ||||||||||||||||||||||| || || ||||||||||| |
Sbjct 239 AGAAGAGTATCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCG 298
Query 295 ATATTGGTATTTCAAGCAAAGCTATGGGGATTATGAACAGTTTCATCAACGACATCTTTG 354
|||| || || ||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 299 ATATCGGAATCTCAAGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCG 358
Query 355 AGAAA-TTGGCATCG-GAATCGTCGAAGCTCGCGAGGTATAATAAGAAGCCGACGATTAC 412
|||| ||| | || || |||||||||| |||||||| |||||||| || || || ||
Sbjct 359 AGAAGCTTG-C-TCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCAC 416
Query 413 TTCTCGGGAGATTCAGACTGCTGTTAGACTTGTT-CTTCCTGGTGAGCTTG-CGAAACAT 470
|| |||||||||||||||||||| ||| ||| | |||||||| ||| ||| |||| |||
Sbjct 417 GTCCCGGGAGATTCAGACTGCTGTGAGA-TTGGTGCTTCCTGGAGAG-TTGGCGAAGCAT 474
Query 471 GCTGTTTCTGAAGGAACTAAGGCGGTGACTAAGTTTACTAGCTCTTGAAT 520
||||||||||| || ||||||||||| || || || || |||||||||||
Sbjct 475 GCTGTTTCTGAGGGGACTAAGGCGGTTACCAAATTCACCAGCTCTTGAAT 524
> Ahg333229 jgi|Araly1|333229|fgenesh1_pm.C_scaffold_189000001
Length=414
Score = 412 bits (223), Expect = 1e-114
Identities = 341/398 (86%), Gaps = 8/398 (2%)
Strand=Plus/Plus
Query 125 AGAGGAGAAATCAAAAGCCGAGAAAGCTCCTGCAGAGAAGAAACCAAAAGCCGGCAAGAA 184
||| |||||||||||||||||||||||||| || |||||||||||||| ||||| |||||
Sbjct 21 AGAAGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGGCCGGAAAGAA 80
Query 185 ACTCCCGAAGGAAGCCGGTGCCGGCGGCGATaagaagaagaagatgaagaagaagaGTGT 244
|||||||||||| || ||||| || || || |||||||| |||||||||||||||||| |
Sbjct 81 ACTCCCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAAGAAGAAGAGTAT 140
Query 245 TGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATATTGGTAT 304
||||| ||||||||||||||||||||||| || || ||||||||||| ||||| || ||
Sbjct 141 CGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAAT 200
Query 305 TTCAAGCAAAGCTATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAGAAA-TTGG 363
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 201 CTCAAGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTG- 259
Query 364 CATCG-GAATCGTCGAAGCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCTCGGGAG 422
| || || |||||||||| |||||||| |||||||| || || || || || ||||||
Sbjct 260 C-TCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGAG 318
Query 423 ATTCAGACTGCTGTTAGACTTGTT-CTTCCTGGTGAGCTTG-CGAAACATGCTGTTTCTG 480
|||||||||||||| ||| ||| | |||||||| ||| ||| |||| |||||||||||||
Sbjct 319 ATTCAGACTGCTGTGAGA-TTGGTGCTTCCTGGAGAG-TTGGCGAAGCATGCTGTTTCTG 376
Query 481 AAGGAACTAAGGCGGTGACTAAGTTTACTAGCTCTTGA 518
| || |||||||| || || || || || |||||||||
Sbjct 377 AGGGGACTAAGGCCGTCACGAAATTCACCAGCTCTTGA 414
> Ahg489144 jgi|Araly1|489144|fgenesh2_kg.6__2278__AT5G22880.1
Length=526
Score = 394 bits (213), Expect = 5e-109
Identities = 364/433 (84%), Gaps = 25/433 (6%)
Strand=Plus/Plus
Query 90 AAGGCAGAGAAGAAGCCGGCAGAGAAGAAACCAGTAGAGGAGAAA-TC-AAAAGCCGAG- 146
|||||||| ||||| || |||||||||||||| | ||| || ||| || |||||||
Sbjct 14 AAGGCAGACAAGAAACCAGCAGAGAAGAAACCGGCAGA-GA-AAACTCTGGCAGCCGAGC 71
Query 147 --AAAGCTCCTGCAGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAGGAAGCCGGTG 204
||| | ||||||||||||||||||||||||||||| ||||| |||||| || ||
Sbjct 72 CCGCAGCGGCGGCAGAGAAGAAACCAAAAGCCGGCAAGAAGCTCCCAAAGGAA-CC--TG 128
Query 205 CCG--G-CGGCGATaagaagaagaagatga-agaagaagaGTGTTGAGACGTACAAGATC 260
||| | ||| || ||||||||||||| || ||||||| || |||||||||||||||
Sbjct 129 CCGTCGCCGGAGACAAGAAGAAGAAGA-GATCTAAGAAGAACGTCGAGACGTACAAGATC 187
Query 261 TACATCTTCAAGGT-TCTGAAACAAGTTCATCCAGATATTGGTATTTCAAGCAAAGCTAT 319
|||||||||||||| | |||||||||||||||||||||| || || ||||||||||| ||
Sbjct 188 TACATCTTCAAGGTGT-TGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCAT 246
Query 320 GGGGATTATGAACAGTTTCATCAACGACATCTTTGAGAAA-TTGGCATCG-GAATCGTCG 377
||| || |||||||||||||||||||| |||||||||||| ||| | | | || || |||
Sbjct 247 GGGAATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTTG-C-TGGTGAGTCTTCG 304
Query 378 AAGCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTT 437
||||| |||||||| || ||||||||||||||||||||| ||||||||||||| || ||
Sbjct 305 AAGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTG 364
Query 438 AGACTTGTTCTT-CCTGGTGAGCTTG-CGAAACATGCTGTTTCTGAAGGAACTAAGGCGG 495
|||||||| || ||||||||| ||| | |||||||||||||||||||| ||||||||||
Sbjct 365 AGACTTGTG-TTGCCTGGTGAG-TTGGCAAAACATGCTGTTTCTGAAGGGACTAAGGCGG 422
Query 496 TGACTAAGTTTAC 508
| || ||||||||
Sbjct 423 TTACGAAGTTTAC 435
> Ahg933338 jgi|Araly1|933338|scaffold_401326.1
Length=506
Score = 355 bits (192), Expect = 2e-97
Identities = 326/388 (84%), Gaps = 19/388 (5%)
Strand=Plus/Plus
Query 140 AGCCGAGAAAGCTCCTGCAGAGAAGAAACCAAAAGCCGGCAAGAAA-CTCCCGAAGGAAG 198
||| |||||||| || ||||||||||||||||||||||| || ||| || || || ||||
Sbjct 105 AGCAGAGAAAGCACCAGCAGAGAAGAAACCAAAAGCCGG-AAAAAAGCTACCAAAAGAAG 163
Query 199 CCGGT-GCCGG-CG-G-CGATaagaagaagaagatgaag--aagaagaGTGTTGAGACGT 252
| || |||| | | ||| ||||||||||| | | || ||||| || ||||| |
Sbjct 164 -CAGTCACCGGAGGAGTCGACAAGAAGAAGAA-ACG-AGTCAAGAAAAGCACAGAGACAT 220
Query 253 ACAAGATCTACATCTTCAAGGT-TCTGAAACAAGTTCATCCAGATATTGGTATTTCAAGC 311
|||||||||| ||||||||||| | ||||||||||||||||||||||||| || ||||||
Sbjct 221 ACAAGATCTATATCTTCAAGGTGT-TGAAACAAGTTCATCCAGATATTGGAATCTCAAGC 279
Query 312 AAAGCTATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAGAAA-TTG-GCATCGG 369
|||||||||||||||||||||||||| |||||||| || || |||||| ||| ||| |
Sbjct 280 AAAGCTATGGGGATTATGAACAGTTTTATCAACGATATATTCGAGAAACTTGCGCAA-G- 337
Query 370 AATCGTCGAAGCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCTCGGGAGATTCAGA 429
|| | ||||| | || |||||||||||||| || |||||||||||| ||||||||||||
Sbjct 338 AAGCTTCGAAATTAGCTAGGTATAATAAGAAACCTACGATTACTTCTAGGGAGATTCAGA 397
Query 430 CTGCTGTTAGACTTGTTCTT-CCTGGTGAGCTTGCGAAACATGCTGTTTCTGAAGGAACT 488
| |||||||||||||| || |||||||| ||||| || |||||||||||||||||||||
Sbjct 398 CAGCTGTTAGACTTGTG-TTACCTGGTGAACTTGCTAAGCATGCTGTTTCTGAAGGAACT 456
Query 489 AAGGCGGTGACTAAGTTTACTAGCTCTT 516
|| || || |||||||||||||||||||
Sbjct 457 AAAGCTGTTACTAAGTTTACTAGCTCTT 484
> Ahg482740 jgi|Araly1|482740|fgenesh2_kg.4__1800__AT2G37470.1
Length=488
Score = 259 bits (140), Expect = 2e-68
Identities = 217/254 (85%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 246 GAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATATTGGTATT 305
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 125 GAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAATC 184
Query 306 TCAAGCAAAGCTATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAGAAA-TTGGC 364
|| | ||||||||||| |||||||||||||||||||| || ||||| |||||| ||| |
Sbjct 185 TCTGGGAAAGCTATGGGAATTATGAACAGTTTCATCAATGATATCTTCGAGAAACTTG-C 243
Query 365 ATC-GGAATCGTCGAAGCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCTCGGGAGA 423
|| ||||||||| |||||||| || || || ||||||||||||||||| || ||||||
Sbjct 244 -TCAGGAATCGTCAAAGCTCGCTAGATACAACAAGAAGCCGACGATTACATCGAGGGAGA 302
Query 424 TTCAGACTGCTGTTAGACTTGTTCTT-CCTGGTGAGCTTGCGAAACATGCTGTTTCTGAA 482
|||| |||||||| |||||||| || ||||| || || || || ||||| ||||| |||
Sbjct 303 TTCAAACTGCTGTGAGACTTGTG-TTGCCTGGAGAACTCGCTAAGCATGCGGTTTCAGAA 361
Query 483 GGAACTAAGGCGGT 496
|| || ||||||||
Sbjct 362 GGCACGAAGGCGGT 375
> Ahg898300 jgi|Araly1|898300|Al_scaffold_0005_2266
Length=294
Score = 252 bits (136), Expect = 3e-66
Identities = 235/281 (84%), Gaps = 13/281 (5%)
Strand=Plus/Plus
Query 221 gaagaagat-gaagaagaagaGTGTTGAGACGTACAAGATCTACATCTTCAAGGTTCTGA 279
|||||| || ||||||||| | | |||||||||||||||||||||||||||||| |||
Sbjct 3 GAAGAA-ATCGAAGAAGAACA---TCGAGACGTACAAGATCTACATCTTCAAGGTTTTGA 58
Query 280 AACAAGTTCATCCAGATATTGGTATTTCAAGCAAAGCTATGGGGATTATGAACAGTTTCA 339
| ||||||||||||||||| || || || | ||||| ||||| || |||||||||||||
Sbjct 59 AGCAAGTTCATCCAGATATCGGAATCTCTGGGAAAGCGATGGGAATCATGAACAGTTTCA 118
Query 340 TCAACGACATCTTTGAGAAATTGGCATC-GGAATCGTCGAAGCTCG-CGAGGTATAATAA 397
||||||||||||| |||||| | || || |||||| ||| | | | | ||||| || ||
Sbjct 119 TCAACGACATCTTCGAGAAACTCGC-TCAGGAATCATCGC-GATTGGCTAGGTACAACAA 176
Query 398 GAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAGACTTGTTCTT-CCTGGTG 456
|||||||||||| ||||||||||| |||||||| || || |||||||| || ||||| |
Sbjct 177 GAAGCCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTG-TTGCCTGGAG 235
Query 457 AGCT-TGCGAAACATGCTGTTTCTGAAGGAACTAAGGCGGT 496
| || | ||||||| |||||||||||||| |||||||||||
Sbjct 236 AACTCT-CGAAACACGCTGTTTCTGAAGGCACTAAGGCGGT 275
> Ahg939636 jgi|Araly1|939636|scaffold_600180.1
Length=439
Score = 243 bits (131), Expect = 2e-63
Identities = 250/307 (81%), Gaps = 10/307 (3%)
Strand=Plus/Plus
Query 215 TaagaagaagaagatgaagaagaagaGTGTTGAGACGTACAAGATCTACATCTTCAAGGT 274
|||||||||||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct 116 TAAGAAGAAGAAGAAGACGAAGAAGAGCACGGAGACGTACAAGATCTACATCTTCAAGGT 175
Query 275 -TCTGAAACAAGTTCATCCAGATATTGGTATTTCAAGCAAAGCTATGGGGATTATGAACA 333
| ||||||| |||||||||||||| || || || | ||||| ||||| || |||||||
Sbjct 176 AT-TGAAACAGGTTCATCCAGATATCGGAATCTCTGGTAAAGCAATGGGAATCATGAACA 234
Query 334 GTTTCATCAACGACATCTTTGAGAAATTGGCATC-GGAATCGTCGAAG-CTCGCGAGGTA 391
|||||||||||||||| ||||||||| | || || ||||||||| | ||||| | ||
Sbjct 235 GTTTCATCAACGACATTTTTGAGAAACTCGC-TCAGGAATCGTCTC-GTCTCGCTCGTTA 292
Query 392 TAATAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAGACTTGTTCTT-C 450
|||||||| ||||| || || ||||| || || || || ||||| ||||||||| || |
Sbjct 293 CAATAAGAAACCGACCATCACGTCTCGTGAAATCCAAACCGCTGTGAGACTTGTT-TTGC 351
Query 451 CTGGTGAGCTTG-CGAAACATGCTGTTTCTGAAGGAACTAAGGCGGTGACTAAGTTTACT 509
||||||| ||| | || |||||||| ||||||||||| || || || || || || ||
Sbjct 352 CTGGTGAA-TTGGCTAAGCATGCTGTCTCTGAAGGAACCAAAGCCGTCACCAAATTCACA 410
Query 510 AGCTCTT 516
|||||||
Sbjct 411 AGCTCTT 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25123002303
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5