BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46040.1
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323263 jgi|Araly1|323263|fgenesh1_pm.C_scaffold_5000807 671 0.0
Ahg332256 jgi|Araly1|332256|fgenesh1_pm.C_scaffold_8001599 505 2e-142
> Ahg323263 jgi|Araly1|323263|fgenesh1_pm.C_scaffold_5000807
Length=393
Score = 671 bits (363), Expect = 0.0
Identities = 383/393 (97%), Gaps = 0/393 (0%)
Strand=Plus/Plus
Query 121 ATGGTGAGAATCAGTGTGCTCAATGATGGTCTTAAGAGTATGTACAATGCAGAGAAGAGA 180
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1 ATGGTGAGAATCAGTGTGCTCAATGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 60
Query 181 GGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTC 120
Query 241 ATGCAAAAGCACGGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAG 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGCAAAAGCACGGTTACATCGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAG 180
Query 301 ATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGAGTTATCAGTCCTCGTTTCGAT 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 ATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGTGTTATCAGTCCTCGTTTCGAT 240
Query 361 GTCGGTGTTAAGGAGATTGAAGGATGGACTGCTCGTCTACTTCCTTCCAGACAGTTTGGT 420
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 241 GTCGGTGTTAAGGAGATTGAAGGTTGGACTGCTCGTCTACTTCCTTCGAGACAGTTTGGT 300
Query 421 TTCATTGTTCTGACGACCTCAGCGGGAATCATGGATCATGAAGAAGCTAGGAGAAAGAAC 480
| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 301 TACATTGTTCTGACGACCTCAGCGGGAATCATGGATCACGAAGAAGCCAGGAGAAAGAAT 360
Query 481 GTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGA 513
|||||||||||||||||||||||||||||||||
Sbjct 361 GTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGA 393
> Ahg332256 jgi|Araly1|332256|fgenesh1_pm.C_scaffold_8001599
Length=393
Score = 505 bits (273), Expect = 2e-142
Identities = 354/394 (90%), Gaps = 2/394 (1%)
Strand=Plus/Plus
Query 121 ATGGTGAGAATCAGTGTGCTCAATGATGGTCTTAAGAGTATGTACAATGCAGAGAAGAGA 180
|||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 1 ATGGTGAGAATCAGTGTGCTTAATGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 60
Query 181 GGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTC 240
|| |||||||| || ||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 61 GGGAAGAGGCAAGTCATGATCAGGCCATCTTCTAAAGTGATCATCAAGTTTCTTATCGTC 120
Query 241 ATGCA-AAAGCACGGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAA 299
||||| ||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 121 ATGCAGAAA-CACGGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGTAA 179
Query 300 GATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGAGTTATCAGTCCTCGTTTCGA 359
|||||| |||||||| |||||||| || ||||| |||||||| |||||||||||||| ||
Sbjct 180 GATTGTGGTTGAGCTCAATGGAAGACTAAACAAATGTGGAGTCATCAGTCCTCGTTTTGA 239
Query 360 TGTCGGTGTTAAGGAGATTGAAGGATGGACTGCTCGTCTACTTCCTTCCAGACAGTTTGG 419
||| || ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct 240 TGTTGGAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCTAGACAGTTTGG 299
Query 420 TTTCATTGTTCTGACGACCTCAGCGGGAATCATGGATCATGAAGAAGCTAGGAGAAAGAA 479
| ||||||||| ||||| || || || || ||||| || |||||||| |||||||||||
Sbjct 300 ATACATTGTTCTTACGACTTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAA 359
Query 480 CGTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGA 513
||||||||||| |||||||| ||||||||||||
Sbjct 360 TGTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGA 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27372254406
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5