BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46050.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931328 jgi|Araly1|931328|scaffold_303785.1 584 4e-166
Ahg939679 jgi|Araly1|939679|scaffold_600223.1 477 7e-134
Ahg324957 jgi|Araly1|324957|fgenesh1_pm.C_scaffold_6000177 448 6e-125
Ahg939678 jgi|Araly1|939678|scaffold_600222.1 446 2e-124
Ahg487074 jgi|Araly1|487074|fgenesh2_kg.6__208__AT5G02980.1 335 5e-91
Ahg923669 jgi|Araly1|923669|scaffold_104950.1 283 2e-75
Ahg923668 jgi|Araly1|923668|scaffold_104949.1 220 1e-56
Ahg337325 jgi|Araly1|337325|fgenesh1_pg.C_scaffold_1003890 182 6e-45
Ahg349589 jgi|Araly1|349589|fgenesh1_pg.C_scaffold_6000182 100 2e-20
> Ahg931328 jgi|Araly1|931328|scaffold_303785.1
Length=1075
Score = 584 bits (316), Expect = 4e-166
Identities = 803/1027 (78%), Gaps = 78/1027 (8%)
Strand=Plus/Plus
Query 40 CCTCCGACGTCGTTTTCTTCGTTACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTC 99
|||||||| |||||||||||||||||||| |||||| |||||| || ||||||||||||
Sbjct 33 CCTCCGACATCGTTTTCTTCGTTACCGGAAGACATCATTCTCAGTTGCTTGGCTCGTGTC 92
Query 100 TCCAGATTCCATTATCCAACTCTATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGAC 159
|| | |||| || ||| ||||||||| |||||| |||| ||||||||| ||| ||| |
Sbjct 93 TCAAAATTCTATCGTCCGACTCTATCCTTAGTCTCCAAGTATTTCCGATCTCTCGTAG-C 151
Query 160 -TC-CCGTGAGCTCCACGCAACACGATCTTGCATCGGAAAAACCG-AGAGTT-TCCTCTA 215
|| || ||| || | || ||||| || ||| ||| | ||| | ||| || | ||||
Sbjct 152 TTCTCC-TGATCTTGAGGCCACACGTTCCCGCAACGGGATAACAGAAGA-TTAT-CTCTG 208
Query 216 CGTCTGCTTAGACCTGCATAGGAATTGCTATCCAGACTGTCCTCCACGATGGTTTATAGT 275
|||||||||| | | | | || | || | | | ||| || ||||| | | |
Sbjct 209 CGTCTGCTTA-AAC-G--T-GG----G--GTCTA-A--G-CCT---CGCTGGTTCACACT 250
Query 276 TTCCCCGATT---ACCA-AACAGAAACTGAAACCTATCCCT--TCGGT-T--ACTTGTC- 325
| | || ||| || | |||||||||| ||||| |||||| | | | || | |
Sbjct 251 TGCACC-ATTCCCACAACAACAGAAACTCAAACCAATCCCTCCTTATTATAAACATCCCA 309
Query 326 AATCCTCAACCGTTGTATCAATCGGTTCAAAGATTTACATAATCGGAGGCTTCGTTGATG 385
||||||| |||||||| |||||||||||| ||||||||||||||||||||| | || ||
Sbjct 310 AATCCTCCACCGTTGTTTCAATCGGTTCAGAGATTTACATAATCGGAGGCTCCCTTCAT- 368
Query 386 GACATAG-TA-GCAGGAGATTGATAGTACTCGATTGTCCATCTCATGGATGGCGTAGACT 443
| | || | ||| ||| || | || || ||||||| ||||||| ||||||||||||
Sbjct 369 CA-AAAGAAAGGCAACAGAGTGTTGGTTCTTGATTGTCGATCTCATCTATGGCGTAGACT 427
Query 444 CCCCGAGATGCGTGTACCTCGACAAAAC-GCAGCAGCTGATGTAATCAACGATAAGATCT 502
|| | |||||| || || || |||| |||| |||||||||||| | | ||||||||
Sbjct 428 ACCAAACATGCGTCTAGCTAGA-GAAACTCCAGCCGCTGATGTAATCGATGGTAAGATCT 486
Query 503 ACGTGATTGGAGGCTCTA-GTTCCAACAATATCGAGGATTGGGGAGAGGTTTATGACCCA 561
|||||| ||||||||||| | || |||| |||||| ||||||||||||||||||| | |
Sbjct 487 ACGTGAATGGAGGCTCTACG-TCGTACAAAATCGAGAATTGGGGAGAGGTTTATGATCTA 545
Query 562 AAGACCCAAACTTGGGAGCCAGTATTGCCCACAACACTAGATCTTACTGTTCA-AATGAG 620
||||||||||||||||||||| ||||| |||||||| ||||| || ||| || |||
Sbjct 546 AAGACCCAAACTTGGGAGCCATTATTGTTTACAACACTTGATCTCACCACTCATAA-GAG 604
Query 621 TGTGGTTCCAGGTAGCTTGGTAATGAGTGGGAAAGTTTATGAC-ATGAATG--GA-TTGA 676
|||||||||||||| ||||||||| |||| ||||||||| | ||||||| || ||||
Sbjct 605 TGTGGTTCCAGGTAAATTGGTAATGGGTGGAAAAGTTTAT-TCTATGAATGATGATTTGA 663
Query 677 AGCTTAACTTTCAGAAGAATATTTGCTTGGTGGAGATAGAGAACATGATGTGCCAAACAA 736
|| ||| ||| |||||||| |||||||||| ||||||||||||||||||||||||| |
Sbjct 664 AGATTAGCTTGGAGAAGAATGTTTGCTTGGTAGAGATAGAGAACATGATGTGCCAAATAT 723
Query 737 AGGTTTGTGAAGGGG-TGTTAGTTTGGTGTGAA-CCAGAGGAAG-A-TCGTGGGTGGTGT 792
| ||| ||||||| |||||||||||| | || ||||||| || | | | |||||| ||
Sbjct 724 CGATTT-CGAAGGGGATGTTAGTTTGGTAT-AATCCAGAGG-AGAATTTG-GGGTGGAGT 779
Query 793 CCGGTTGATGGACTTGAAGGACTTCC-CAATAG-GCCA-ACTTCTCCTGGTTATCTTACC 849
|||||| |||||||||||| | || | | | ||| | || |||||||||||| ||
Sbjct 780 AGGGTTGAGGGACTTGAAGGAGTACCTC-GT-GATCCATA-TTTTCCTGGTTATCTAACT 836
Query 850 TCGGTGGCACA-TTCCGACCGAGGAAGAAGAGTAACAGTTTGGTGGGAGTCGGCTGTGTT 908
||||||||| | || |||||||||||| |||||||||||||||||| ||| | | ||
Sbjct 837 TCGGTGGCA-AGTTACGACCGAGGAAGGAGAGTAACAGTTTGGTGGAAGT-TGAT-AGTG 893
Query 909 ACATCG-TCTAGGTCCCAAATGGACTAAGGAATGTAAAACAGAGATTTGGTGTGCAGAGA 967
| ||| | | || || | |||| | |||| |||||||||||||||||||||||||||
Sbjct 894 A-GTCGTTGTTGG-CCTGATTGGA-T--GGAAAGTAAAACAGAGATTTGGTGTGCAGAGA 948
Query 968 TTTCGTTTGAGAGACGCGGTGTT-GGAAAGGTTTGTGGATTTGTTGAATGGTCTAAGAAT 1026
|||||||||||||||| | | || |||||| |||| || |||||||||||||||||||||
Sbjct 949 TTTCGTTTGAGAGACGAGAT-TTAGGAAAGCTTTGGGGTTTTGTTGAATGGTCTAAGAAT 1007
Query 1027 GTCTTTA 1033
|| ||||
Sbjct 1008 GTGTTTA 1014
> Ahg939679 jgi|Araly1|939679|scaffold_600223.1
Length=1165
Score = 477 bits (258), Expect = 7e-134
Identities = 803/1050 (76%), Gaps = 101/1050 (10%)
Strand=Plus/Plus
Query 40 CCTCCGACGTCGTTTTCTTCGTTACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTC 99
||||||||||||||||||||||||||| ||||| | ||||| || |||||||||||||||
Sbjct 75 CCTCCGACGTCGTTTTCTTCGTTACCGTACGACTTGGTTCTGAATTGTTTGGCTCGTGTC 134
Query 100 TCCAGATTCCATTATCCAACTCTATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGAC 159
|| ||| ||| |||||||||| |||| || |||| ||||||||||||||| ||| | | |
Sbjct 135 TCGAGAATCCGTTATCCAACTTTATCTCTCGTCTCCAAGGGTTTCCGATCTCTCATCG-C 193
Query 160 -TCCCGTGAGCTCCACGCAACACGA-TCTTGCATCGGAAAAACCGA-GAGTTTCCTCTAC 216
|||| ||||||| | || |||||| || | ||| ||||||||||| || || | |||
Sbjct 194 TTCCCCTGAGCTCGAGGCCACACGATTC-TCCATGGGAAAAACCGAGGA-TTGCATCTTT 251
Query 217 GTCTGCTTAGACCTGC-AT-AGGAATTGCTATCCAGACTGTCCTCCACGATGGTTTATAG 274
|| |||||| |||| | || | ||| | | || || || | | | | ||| | |
Sbjct 252 GTTTGCTTAAACCT-CAATCA-GAA---C-AACC---CTAACC-CTA-GCTTGTTCACAC 300
Query 275 TTTCCCCGATTACCAAAC-AGA--AACTGA-AACCTATCCCTTCGG-TTAC-T-TG-TC- 325
||||||| ||| |||||| ||| || | | ||| ||||||| || || | | || ||
Sbjct 301 TTTCCCCAATTCCCAAACAAGAGGAA-TTACTACCCATCCCTT-GGTTTCCTTATGATCA 358
Query 326 A-AT-CC---T---CAACCGTTGTAT-CAATCGGTTCAAAGATTTACATAATCGGAGGCT 376
| || || | ||||| || | | |||| ||| || |||||||||||||||||||||
Sbjct 359 ACATCCCAAATACCCAACCATTCT-TGCAATTGGTGCAGAGATTTACATAATCGGAGGCT 417
Query 377 TCGTTGATG-G-ACATAGTAGCAGGAGATTGATAG-TACTCGATTGTCCATCTCATGGAT 433
|| | | | | || || |||| |||| || | | | |||||||||| ||||||| ||
Sbjct 418 TC-CTCAAGAGAAC-GAGAAGCAAGAGAGTG-TTGATTCTCGATTGTCTATCTCATCAAT 474
Query 434 GGCGTAGACTCCCCGAGATGCGTGTACCTCGACAAAAC-GCAGCAGCTGATGTAATCAAC 492
||||||||||||| | |||||| || ||||| | || || || ||||||||| ||
Sbjct 475 GGCGTAGACTCCCAAAAATGCGTCTATCTCGA-GCTTCTGCTGCCGCGGATGTAATCGAC 533
Query 493 GATAAGATCTACGTGATTGGAGGCTCTAGTTCCAACAATATCGAGGATTGGGGAGAGGTT 552
| |||||||||||||||||||||| | || ||||| ||||||||| ||||||||||||||
Sbjct 534 GGTAAGATCTACGTGATTGGAGGCACAAGGTCCAAGAATATCGAGAATTGGGGAGAGGTT 593
Query 553 TATGACCCAAAGACCCAAACTTGGGAGCCAGTATTGCCCACAACACTAGATCTTACTGTT 612
| |||||||||||||||||||||||||||| |||| ||||||||||| ||||| || |||
Sbjct 594 TTTGACCCAAAGACCCAAACTTGGGAGCCAATATTTCCCACAACACTTGATCTCACCGTT 653
Query 613 CAAATGAGTGTGGTTCCAGGTAGCTTGGTAATGAGTGGGAAAGTTTATGACATGAATGGA 672
|||| |||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |
Sbjct 654 CAAAAGAGTGTGGTTCCAGGTAGGTTGGTAATGGGTGGGAAAGTTTATGACATGGATG-A 712
Query 673 TT-GA---AGCTTA-ACTTTCAGAAGAATATTTGCTTGGTGGAGATAGAGAACATGATGT 727
|| | |||||| | || | ||| || ||| ||| || |||||||| || || |||
Sbjct 713 TTTGTTTCAGCTTAGA-TTGCTCAAGGATGTTTTCTTAGTAGAGATAGAAAATGTGTTGT 771
Query 728 GCCAAACAAAGGTTTGTGAAGGGGTGT-TAGTTTGGTGTGAACC-AGAGGAAGATCG-TG 784
|||||| | | | ||| |||| | || ||||| |||| || | ||| |||| | |
Sbjct 772 GCCAAATATCTCTA-GCGAATGGGTATCTACTTTGGCGTGATCCTA-AGGCAGATGGATC 829
Query 785 -G-GTGGTGTC-CGGTTGATGG-ACTTGAAGGACTTCCCAATAGGCCAACT-TCTCCTGG 839
| |||| || || || ||| |||| ||| ||| || | |||| || || |
Sbjct 830 TGAGTGGAGTAACGTTT--TGGGACTT-AAG--CTTG--AA--G---AACTGTCCCC-G- 875
Query 840 T-T-ATC-TTACCTCG-GTGGCACATTCCGACCGAGGAAGAAGAGT-AACAGTTTGGTGG 894
| | | | ||| | | |||| | | |||| | ||| ||||||||| || ||| ||||||
Sbjct 876 TATCAACCTTAT-T-GTGTGGAAAACTCCGGCGGAGAAAGAAGAGTGAA-AGTGTGGTGG 932
Query 895 GAGTCGGCTGTGTTACATCGTC-T-A-GGTCCCAAA--T-G--G-ACTAAGGAATGTAAA 945
||||||| || || | |||| | | | |||| || | | | | ||||| |||| | |
Sbjct 933 GAGTCGG-TG-GTGA-ATCGCCGTCAAGGTCGCAGACGTCGCCGTACTAATGAATTTCAC 989
Query 946 ACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTGTT-GGAAAGGTTTGTGG 1004
||||||||||||||||||||| |||||||||||||||| ||| || ||| || |||| ||
Sbjct 990 ACAGAGATTTGGTGTGCAGAGGTTTCGTTTGAGAGACGAGGT-TTAGGAGAGCTTTGGGG 1048
Query 1005 ATTTGTTGAATGGTCTAAGAATGTCTTTAC 1034
||| |||||||||||||| ||||| |||||
Sbjct 1049 ATTCGTTGAATGGTCTAAAAATGTGTTTAC 1078
> Ahg324957 jgi|Araly1|324957|fgenesh1_pm.C_scaffold_6000177
Length=1062
Score = 448 bits (242), Expect = 6e-125
Identities = 621/799 (78%), Gaps = 46/799 (6%)
Strand=Plus/Plus
Query 6 GACG-AAA-GAGAAGAATAAATCATCAAACTCACCGCCTCCGAC-GTCGTTTTCT-TCGT 61
|||| ||| |||| ||| ||||||||| | || | |||||||| || |||| | ||||
Sbjct 73 GACGAAAATGAGACGAAGAAATCATCAGA--CA-CTCCTCCGACAGT-ATTTT-TGTCGT 127
Query 62 TACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTCTCCAGATTCCATTATCCAACTC 121
|||| ||||| ||| ||||||| ||||||||||||||||| |||||| || |||| ||
Sbjct 128 TACCCGACGAAATCATTCTCAATTGTTTGGCTCGTGTCTCGAGATTCTATCGTCCATGTC 187
Query 122 TATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGAC-TC-CCGTGAGCTCCACGCAAC 179
||||| | ||| ||||| ||||| ||| ||| | | | || || ||| ||| | || ||
Sbjct 188 TATCCTTGGTCAACAAGGATTTCCAATCTCTCATCG-CTTCTCC-TGATCTCGAGGCCAC 245
Query 180 ACGATCTTGCATCGGAAAAACCGAG-AGTTTCCTCTACGTCTGCTTAGACCT-GCATAGG 237
||||| | |||||| ||| ||| || | ||| || ||||||||||| | | ||| |
Sbjct 246 GCGATCCCGAATCGGAGTAACAGAGAAG-TACCTTTATGTCTGCTTAGA-GTCGAATAAG 303
Query 238 AATTGCTATCCAGACTGTCCTCCACGATGGTTTATAGTTTCCCCGATTACC--A-AACAG 294
|| | | || | | ||| || ||||| | | || | || ||| || | |||||
Sbjct 304 AA---C-AACC---C--TAATCCTCGCTGGTTCACACTTGCACCAATTCCCAAACAACAG 354
Query 295 AAACTGAAACCTATCCCTTCGGTTAC-T-T-G---T--CA-ATCCTCAACCGTTGTATCA 345
||||||||||||||||||| || | | | | | || ||| ||||| ||||| ||
Sbjct 355 AAACTGAAACCTATCCCTTTATTTCCTTATCGACATCCCACATCATCAACTGTTGTCTCT 414
Query 346 ATCGGTTCAAAGATTTACATAATCGGAGGCTTCGTTGATGGACA-TAGTAG-CAGGAGAT 403
|| |||||| |||||||||| ||||||||||||||| | ||| | || || || ||||
Sbjct 415 ATTGGTTCAGAGATTTACATCATCGGAGGCTTCGTTAAGGGA-AGGAGAAGCCA-GAGAG 472
Query 404 TGATAGTACTCGATTGTCCATCTCATGGATGGCGTAGACTCCCCGAGATGCGTGTACCTC 463
|| | || || ||||||| ||||||| ||| |||||||||||| | |||| | |||||
Sbjct 473 TGTTGGTTCTAGATTGTCGATCTCATCAATGTCGTAGACTCCCCAACATGCATCAACCTC 532
Query 464 GACAAAAC-GCAGCAGCTGATGTAATCAACGATAAGATCTACGTGATTGGAGGCT-CTAG 521
|| | ||||| | |||||| ||| ||| ||||||||||||||||||||| | | ||
Sbjct 533 GA-GTTTCTGCAGCCGTTGATGTCATCGACGGTAAGATCTACGTGATTGGAGGATACAAG 591
Query 522 TTCCAACAATATCGAGGATTGGGGAGAGGTTTATGACCCAAAGACCCAAACTTGGGAGCC 581
|| ||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 592 -TCTAACAATATCGACAATTGGGGAGAGGTTTATGATCCAAAGACCCACACGTGGGAGCC 650
Query 582 AGTATTGCCCACAACACTAGATCTTACTGTTCAAATGAGTGTGGTTCCAGGTAGCTTGGT 641
| |||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||||
Sbjct 651 AATATTACCCACAACACTTGATCTCACCACTCAAAAGAGTGTGGTTCCAGGTAGCTTGGT 710
Query 642 AATGAGTGGGAAAGTTTATGACATGAATGGATTGAAGCTTAACTTTCAGAAGAATATTTG 701
|||| |||||||||| |||| |||| ||| |||||| ||||||| | |||||||||
Sbjct 711 AATGGGTGGGAAAGTCTATGGCATGGTTGGTTTGAAGGTTAACTTGAACCCGAATATTTG 770
Query 702 CTTGGTGGAGATAGAGAACATGATGTGCCAAACAAAGGTTTGTGAAGGGGTGTTAGTTTG 761
|||||| |||||||| |||||||||||||||| | |||||| ||||| | ||| ||||
Sbjct 771 CTTGGTAGAGATAGACAACATGATGTGCCAAATATCGGTTTGCAAAGGGATATTACTTTG 830
Query 762 GTGTGAACCAGAGGAAGAT 780
|| ||| |||||||||||
Sbjct 831 GTATGATTCAGAGGAAGAT 849
> Ahg939678 jgi|Araly1|939678|scaffold_600222.1
Length=1129
Score = 446 bits (241), Expect = 2e-124
Identities = 621/797 (78%), Gaps = 55/797 (7%)
Strand=Plus/Plus
Query 3 GACGACGAAAGAGAAGAATAAATCATC-A-A-ACTCACCG-C--CTCCGACGTCGTTTTC 56
||||||| |||||| || |||||| || | | | || ||| | | ||||||||||||
Sbjct 8 GACGACGGAAGAGATGAGTAAATCGTCAACAGAGTCTCCGACAACGACGACGTCGTTTTG 67
Query 57 TTCGTTACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTCTCCAGATTCCATTATCC 116
|||||||||| |||| || ||||||| ||| |||||||| |||| ||||||||||||||
Sbjct 68 TTCGTTACCGTTCGACGTCATTCTCAATTGTCTGGCTCGTATCTCGAGATTCCATTATCC 127
Query 117 AACTCTATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGAC-TC-CCGTGAGCTCCAC 174
||||||||| || |||| ||||||||||||||| ||| | | | || || ||||||| |
Sbjct 128 AACTCTATCTCTCGTCTCCAAGGGTTTCCGATCTCTCATCG-CTTCTCC-TGAGCTCGA- 184
Query 175 G-CAACACGATCTTGCATCGGAAAAAC-CGAGAGTTTCCTCTACGTCTGCTTAGACCTGC 232
| | |||||||| |||| |||| ||| | || | ||||| |||| | ||||||||
Sbjct 185 GACGACACGATCCCGCATGGGAATAACAGGGGA-TCACCTCTGTGTCTTCATAGACCTGA 243
Query 233 ATAGGAATTGCTATCCAGACTGTCCTCCACGATGGTTTATAGTTTCCCCGATTACCAAAC 292
||| ||| | | || | ||| || ||||| |||||||||||||| ||| ||
Sbjct 244 ATAAGAA-----A---A-ACCCTAATCCTCGCTGGTTCCTAGTTTCCCCGATTCCCACAC 294
Query 293 AGAAACT-GAAACCTATCCCTTCG-GT--T-A-C--T-TGTC-AATCCTCAACCGTTGTA 342
||||| | |||||| ||||||||| | | | | | | | ||||||||||| ||||
Sbjct 295 AGAAA-TCGAAACCCATCCCTTCGTTTCCTCATCAATATCCCAAATCCTCAACCATTGTC 353
Query 343 TC-AATCGGTTCAAAGATTTACATAATCGGAGGCTTCGTTGATG-GACATAGTAGCAGGA 400
|| ||| |||||||||||||||||||||||||| || | | | | || | || |||| ||
Sbjct 354 TCAAAT-GGTTCAAAGATTTACATAATCGGAGGGTTTG-TCAGGAGAAAGAGAAGCAAGA 411
Query 401 GATTGATAG-TACTCGATTGTCCATCTCATGGATGGCGTAGACTCCCCGAGATGCGTGTA 459
|| || | | |||||||||||| |||||| ||| |||||||||||| | |||||| ||
Sbjct 412 GAGTG-TTGATACTCGATTGTCGATCTCAACAATGCCGTAGACTCCCCAACATGCGTCTA 470
Query 460 CCTCGACAAAAC-GCAGCAGCTGATGTAATCAACGATAAGATCTACGTGATTGGAGGCT- 517
|||||| | |||| |||||||||||| || ||||||||| |||||||| || |
Sbjct 471 CCTCGA-GTTTCTCCAGCCGCTGATGTAATCGCCGGTAAGATCTATGTGATTGGCGGTTA 529
Query 518 CTAGTTCCAACAATATCGAGGATTGGGGAGAGGTTTATGACCCAAAGACCCAAACTTGGG 577
| || || ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 530 CGAG-TCGAACAATATCGATGAATGGGGAGAGGTTTATGACCCAAAGACCCAAACTTGGG 588
Query 578 AGCCAGTATTGCCCACAACACTAGATCTTACTGTTCAAATGAGTGTGGTTCCAGGTAGCT 637
||||| |||||||||||||||| ||||| || || |||| ||||| ||||||||||| |
Sbjct 589 AGCCATTATTGCCCACAACACTTGATCTCACCGTCCAAAAGAGTGAGGTTCCAGGTAAAT 648
Query 638 TGGTAATGAGTGGGAAAGTTTATGACATG-A--ATG-GATTGAAGCTTA-ACT-TTCAGA 691
|||| ||| ||||||||||||||| |||| | ||| | |||| ||||| | | || ||
Sbjct 649 TGGTTATGGGTGGGAAAGTTTATGCCATGGATGATGTGTTTGA-GCTTACATTGTT--GA 705
Query 692 AGAATATTTGCTTGGTGGAGATAGAGAACATGATGTGCCAAACAAAGGTTTGTGAAGGGG 751
|| || | ||||| || ||||||||| || ||||||||| | | |||| | | |||
Sbjct 706 AGGATGTATGCTTAGTAGAGATAGAGTTTGTGTTGTGCCAAATATCGCTTTG-GTATGGG 764
Query 752 -TGTTAGTTTGGTGTGA 767
|| |||||||| ||||
Sbjct 765 ATGCTAGTTTGGCGTGA 781
> Ahg487074 jgi|Araly1|487074|fgenesh2_kg.6__208__AT5G02980.1
Length=1029
Score = 335 bits (181), Expect = 5e-91
Identities = 450/576 (78%), Gaps = 33/576 (6%)
Strand=Plus/Plus
Query 41 CTCCGACGTCGTTTTCTTCGTTACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTCT 100
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 35 CTCCGACGTCGTTTTCTTCGTTACCATACGACATCATTCTCAACTGTTTGGCTCGTGTCT 94
Query 101 CCAGATTCCATTATCCAACTCTATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGACT 160
| |||||||| |||||||||||||| || |||| ||||||||||| ||| ||| | | ||
Sbjct 95 CGAGATTCCACTATCCAACTCTATCTCTCGTCTCCAAGGGTTTCCAATCTCTCATCGCCT 154
Query 161 CCCGTGAGCTCCACGCAACACGATCTTGCATCGGAAAAACCGAGAGTTTCCTCTACGTCT 220
||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 155 CCCGTGAGCTCTACGCTACACGATCCCGCATCGGAAAAACCGAGAGTTTCCTCTATATCT 214
Query 221 GCTTAGACCTG-CATAGGAATTGCTATCC-AGACTGTCCTCCACGATGGTTTATAGTTTC 278
||||| ||||| | || ||| | | || | | || || | ||||| | | || |
Sbjct 215 GCTTAAACCTGAC-TAAGAACCACAACCCTA-A--GTA-TCG-C--TGGTTCACACTTCC 266
Query 279 CCC-GATTACCAA-A-C-AGAAACTGAA-ACCTATCCCTTCGGTTACTTGTCA----A-T 328
||| | || |||| | | ||||| | | ||| ||||||| | || ||| ||| | |
Sbjct 267 CCCAG-TTCCCAACAACCAGAAATT-ACTACCCATCCCTTTGTTTCCTTATCATCTCAAT 324
Query 329 -CCTCAACCGTTGTATCAA-TCGGTTCAAAGATTTACATAATCGGAGGCTTCGTT-GATG 385
|||||||||| | |||| | |||||| ||||||||| |||||||||| || || | |
Sbjct 325 TCCTCAACCGTCATCTCAACT-GGTTCAGAGATTTACAGAATCGGAGGCCTCCTTTGG-G 382
Query 386 GACATAGTAGCAGGAGATTGATAG-TACTCGATTGTCCATCTCATGGATGGCGTAGACTC 444
|| |||| | || ||| || | | | | ||||||| |||| || || ||||||||||
Sbjct 383 GAAATAGAAACAAGAGCGTG-TCGGTTTTTGATTGTCGATCTAATCAATCGCGTAGACTC 441
Query 445 CCCGAGATGCGTGTACCTCGA-CAAAACGCAGCAGCTGATGTAATCAACGATAAGATCTA 503
|| | |||||| |||||||| | || || ||| |||| || ||| |||||||||
Sbjct 442 CCAAAAATGCGTCTACCTCGAGCTTCT-GCTGCCGCTCATGTCATTGACGGTAAGATCTA 500
Query 504 CGTGATTGGAGGCT-CTAGTTCCAACAATATCGAGGATTGGGGAGAGGTTTATGACCCAA 562
|| |||||||||| | ||| | || ||| | || | |||||||||||||||||||
Sbjct 501 TGTTATTGGAGGCTACAAGTAC-AATGATAGCCAGAACCAAGGAGAGGTTTATGACCCAA 559
Query 563 AGACCCAAACTTGGGAGCCAGTATTGCCCACAACAC 598
|||||||||||||||||||| |||||| ||||||||
Sbjct 560 AGACCCAAACTTGGGAGCCAATATTGCTCACAACAC 595
Score = 130 bits (70), Expect = 2e-29
Identities = 93/104 (89%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 932 CTAAGGAATGTAAAACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTGTTG 991
||| ||||| | ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 866 CTAGGGAATATGAAACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACACGGT-TTA 924
Query 992 GAA-AGGTTTGTGGATTTGTTGAATGGTCTAAGAATGTCTTTAC 1034
||| ||||||| |||||||||||||||||||| || || |||||
Sbjct 925 GAAGAGGTTTGGGGATTTGTTGAATGGTCTAAAAAAGTGTTTAC 968
> Ahg923669 jgi|Araly1|923669|scaffold_104950.1
Length=1169
Score = 283 bits (153), Expect = 2e-75
Identities = 766/1045 (73%), Gaps = 110/1045 (11%)
Strand=Plus/Plus
Query 50 CGTTTTCTTCGTTACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTCTCC-AGATTC 108
||||||||||||| ||| ||||| ||||| |||| ||||||||||||||| || ||||||
Sbjct 79 CGTTTTCTTCGTTGCCGTACGACCTCGTTTTCAATTGTTTGGCTCGTGTC-CCAAGATTC 137
Query 109 CATTATCCAACTCTATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGAC-TCCCGTGA 167
||| ||| ||||||||| || |||| ||||| ||||||||||||| | | | |||| | |
Sbjct 138 CATCATCAAACTCTATCTCTCGTCTCCAAGGATTTCCGATCACTCAT-GGCTTCCCCTCA 196
Query 168 GCTCCACGCAACACGATCTTGCATCGGAAAAACCGAGAGTTTCCTCTACGTCTGCT-TAG 226
||| | || |||||| | | || |||| | | |||| || | ||| |||| | | |
Sbjct 197 GCTTGAGGCCACACGAACCAGAATGGGAATATCAGAGA-CTTAC-CTATGTCT-ATGT-G 252
Query 227 ACCTGCA---TAGG-AATTGCTATCCAGAC-TGTCCTCCACGATGGTTTATAGTTTCCCC 281
||||| |||| || | ||| | ||| | | | | || ||||| | |||| | |
Sbjct 253 -TCTGCAGCTTAGGTAACTACTA--C-GACAT-TAGTTCTCGCTGGTTCACAGTTGCAAC 307
Query 282 GATTACCAAACA-GA-AA-CTGAAACCTATCCCTTCGGTT-AC-T-TGT-CA-----A-T 328
||| ||||||| || || |||||||||||||||| ||| | | | | || | |
Sbjct 308 AATTCCCAAACACGAGAAGTTGAAACCTATCCCTTC-GTTGTCTTATTTACACCCCCAGT 366
Query 329 CCTCAA-CCGTTGT-ATCAATCGGTTCAAAGATTTA-CATAATCGGAGGCTTCGTTGA-- 383
|||| || | | | |||| |||||| ||||||| || ||||| || ||| || |
Sbjct 367 TTTCAAGCC-TCCTCA-CAATTGGTTCAGAGATTTATAAT-ATCGGTGGTTTCTTTAATC 423
Query 384 T---G----GACATAGTAGCAGGAGATTGATAGTACTCGATTGTCCATCTCATGGATGGC 436
| | || | | |||| ||| || |||| |||||| || | | || | |||
Sbjct 424 TAAAGAAAAGAAAGAAAAGCAAAAGAGTGTTAGTTTTCGATTTTCTAACAAATCAACGGC 483
Query 437 GTAGACTCCCCGAGATGCGTGTACCTCGA-CAAAACGCAGCAGCTGATGTAATCAACGAT 495
||||||||||| ||||||||||||||||| | | | |||| | |||||||||||||| |
Sbjct 484 GTAGACTCCCCAAGATGCGTGTACCTCGAGTAGATC-CAGCCGTTGATGTAATCAACGGT 542
Query 496 AAGATCTACGTGATTGGAGGCTCTA-GTTCCAACAATATCGAGGATTGGGGAGAGGTTTA 554
|||||||| |||||||||||| | | | ||||| ||||| ||||||||||||||||||||
Sbjct 543 AAGATCTATGTGATTGGAGGCAC-AGGGTCCAATAATATTGAGGATTGGGGAGAGGTTTA 601
Query 555 TGACCCAAAGACCCAAACT-TGGGAGCCAGTATTGCCCACAACACTAGATCTTACTGTTC 613
|||||||||||| |||| | ||||||||||||||||||||||||| ||| || ||| |||
Sbjct 602 TGACCCAAAGACACAAA-TGTGGGAGCCAGTATTGCCCACAACACAAGACCTCACTATTC 660
Query 614 AAATGAGTGTGGTTCCAGGTAGCTTGGTAATGAGTGGGAAAGTTTATGACATGAA-TGG- 671
|||||| ||||||||| || || || || ||| |||| ||| |||||| ||| | |||
Sbjct 661 AAATGAATGTGGTTCCGGGAAGATTTGTGATGGGTGGCAAATTTTATGGCAT-ATGTGGT 719
Query 672 -ATTG-AAGCTT-AA-CTTTCAGAAGAATATTTGCTTGGTGGAGATAGAGAACATGATGT 727
| | |||||| || | || || | || |||| ||||| |||||||| ||| || |||
Sbjct 720 GACTACAAGCTTCAATCATT--GACGGATTTTTGTTTGGTAGAGATAGACAACGTGTTGT 777
Query 728 GCCAAACAAAG-GTTTGTGA-AGGGGTGTTAGTTTGGTGTGAACCAGAGGAAGATCGTGG 785
| |||| | |||| | |||| ||||| |||||| ||| | ||||| | |||
Sbjct 778 ACTTAACAC-GTGTTTAC-ATAGGGATGTTATTTTGGTATGATTTAAAGGAACCTT-TGG 834
Query 786 G-TGGTGTCCGGTTGATGGACTTGAAGGACTTCCCAATAGGCC-AACTTCTCCTGGTTAT 843
| ||| | |||| | |||||||| | | | | | || || || | ||| ||
Sbjct 835 GGTGGAATAAGGTTAAGGGACTTGACG-AG--C--A---G-CCGAAATT-TACTG---AT 881
Query 844 CTTACCTCGGTGGCACA-TTCCGA-C--CG-AGGAAGAAGAGTAACAGTTTGGTGG--GA 896
||||| ||| ||||| | |||| | | || | |||||||||| |||||||||||| ||
Sbjct 882 CTTACTTCGTTGGCA-AGTTCC-ATCGGCGGAAGAAGAAGAGTGACAGTTTGGTGGAAGA 939
Query 897 -G-TCG-G-CT-GTGTT-ACA--TCG-TCTAG-GTCCCAAATGGAC-TAAGGAATGTAAA 945
| | | | || | | | | | | | | | | | ||| ||||||||||||
Sbjct 940 CGATAGTGGCTTGCGGTGA-AGGTAGCTTTTGTGAAGGGAATTTTTGTAAGGAATGTAAG 998
Query 946 ACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACG---CGGTGTT-GGAAAGGTTTG 1001
||||||||||||||||||||||||| ||||||||||| |||| || || || ||||
Sbjct 999 TCAGAGATTTGGTGTGCAGAGATTTCATTTGAGAGACGAGACGGT-TTAGGTGAGCTTTG 1057
Query 1002 TGGATTTGTTGAATGGTCTAAGAAT 1026
|||||||||||||||||||| |||
Sbjct 1058 GGGATTTGTTGAATGGTCTAA-AAT 1081
> Ahg923668 jgi|Araly1|923668|scaffold_104949.1
Length=822
Score = 220 bits (119), Expect = 1e-56
Identities = 261/328 (80%), Gaps = 15/328 (5%)
Strand=Plus/Plus
Query 497 AGATCTACGTGATTGGAGGC-TCTAGTTCCAACAATATCGAGGATTGGGGAGAGGTTTAT 555
|||| ||| | || |||||| | || ||||| | ||| |||||||||||||||||||||
Sbjct 435 AGATTTACATAATCGGAGGCACCGAG-TCCAATAGTATTGAGGATTGGGGAGAGGTTTAT 493
Query 556 GACCCAAAGACCCAAACTTGGGAGCCAGTATTGCCCACAACACTAGATCTTACTGTTCAA 615
||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 494 GACCCAAAGACACAAACGTGGGAGCCAGTATTGCCCACAACACTAGATCTCACTAAACAA 553
Query 616 ATGAGTGTGGTTCCAGGTAGCTTGGTAATGAGTGGGAAAGTTTATGACATGAATGGATTG 675
|||||||| |||||||||| ||||||||| |||| ||||| |||| |||||| |||| |
Sbjct 554 ATGAGTGTTGTTCCAGGTAAATTGGTAATGGGTGGCAAAGTGTATGCCATGAA-GGATGG 612
Query 676 --A-AG-CTTAACTTTCA-GAAGAATATTTGCTTGGTGGAGATAGAGAACATGATGTGCC 730
| | ||| ||| | |||| || ||||||||||||||||||| |||||| ||| |
Sbjct 613 CTACAATCTTCGCTTG-ATGAAGGATTTTTGCTTGGTGGAGATAGACAACATGTTGTATC 671
Query 731 AAACAAAGGTTTGTGAAGGGG-TGTTA-GTTTGGTGTGAACCAGAGGAAGATCGTG-GGT 787
||||| ||||| ||| ||| | ||| ||| ||| ||| ||| || || || || |||
Sbjct 672 AAACACGGGTTTC-GAAAGGGATTTTACGTT-GGTCTGATCCAAAGAAAAATT-TGAGGT 728
Query 788 GGTGTCCGGTTGATGGACTTGAAGGACT 815
| | |||| | ||||||||| ||||
Sbjct 729 CGACTAGGGTTAAGGGACTTGAACGACT 756
> Ahg337325 jgi|Araly1|337325|fgenesh1_pg.C_scaffold_1003890
Length=1017
Score = 182 bits (98), Expect = 6e-45
Identities = 416/561 (74%), Gaps = 55/561 (10%)
Strand=Plus/Plus
Query 497 AGATCTACGTGATTGGAGGCTCTAGT-TCCAACAATATCGAGGATTGGGGAGAGGTTTAT 555
|||| ||| | || |||||||| | | ||| | ||||| || ||||||||||||||||||
Sbjct 404 AGATTTACATTATCGGAGGCTCCA-TGTCCGATAATATTGACGATTGGGGAGAGGTTTAT 462
Query 556 GACCCAAAGACCCAAACTTGGGAGCCAGTATTGCCCACAACACTAGATCTTACT-GTTCA 614
||||||||| | ||||||||||||||||||||||||||||||| |||||| ||| || ||
Sbjct 463 GACCCAAAGGCACAAACTTGGGAGCCAGTATTGCCCACAACACAAGATCTCACTAGT-CA 521
Query 615 AATGAGTGTGGTTCCAGGTAG---CTTGGTAATGAGTGGGAAAGTTTAT-GACATGAATG 670
||||||| |||||||||||| |||||||||| |||| | ||||||| | ||||||||
Sbjct 522 AATGAGTTTGGTTCCAGGTAATAACTTGGTAATGGGTGGCAGAGTTTATAG-CATGAATG 580
Query 671 G--ATTGA-AG-CTTAACTTTC-AGAAGAATA-TTTGCTTGGTGGAGATAGAGAACATGA 724
| | | || |||| |||| |||| || | |||| | | | ||||||| ||||||
Sbjct 581 CTCACT-ACAGGCTTAGCTTTATAGAAAAAAAATTTG-T-GATAAAGATAGACAACATGC 637
Query 725 TGTGCCA-AACAAAGGTTTGTGAAGGGGT-GTTAGTTTGGTGTGAACCAGAGGAA-GATC 781
||| | || || ||||| | ||| ||| |||||||||| | | | ||| | |
Sbjct 638 CGTGT-ATAATAA-GGTTTCAGTTTGGGAAGTTTCTTTGGTGTGATCTAAAAGAAAGTTG 695
Query 782 GTGGGTGGTGTCCGGTTGATGGACTTGAAGGACTTCCCAATAGGCCAACTTCTCCTGGTT 841
| || ||| | |||| | ||||| ||||||| ||||| | || | | |
Sbjct 696 GCGG-TGGACTATGGTTAAGGGACTCCAAGGACTGCCCAA----C----TT-T---GAAT 742
Query 842 ATCTTACCTCGGTGGCACATTCCGACCGA-G-G-AAGAAGAGTAACAGTTTGGTGGGAGT 898
|| ||| || ||| ||||||| || | | |||||| || |||||||||||| ||
Sbjct 743 ATATTAT-TCCGTG-----TTCCGACGGAAGAGGAAGAAGTGTGACAGTTTGGTGGAAGA 796
Query 899 CGGCTGTGT-TACATCGTCTAGGTCCCAAATGGACTAAGGAATG-TAAAACAGAG-ATTT 955
| |||| | |||| | |||||| || ||| || || | | || ||| || ||||
Sbjct 797 CAAAGGTGTATCCATC-TGAAGGTCCTAATTGGTTTAGGGTA-GCTATAAC-GAATATTT 853
Query 956 GGTGTGCAGAGATTTCGTTTGAGAGACGCGGTGTT--GGAAAGGTTTGTGGATTTGTTGA 1013
|||||||||| ||||||||| | |||||| |||| |||| | |||| |||||||||||
Sbjct 854 GGTGTGCAGAAATTTCGTTTAAAAGACGC--TGTTCAGGAATGCTTTGGGGATTTGTTGA 911
Query 1014 ATGGTCTAAGAATGTCTTTAC 1034
|||||||||| ||| |||||
Sbjct 912 GTGGTCTAAGATTGTGTTTAC 932
> Ahg349589 jgi|Araly1|349589|fgenesh1_pg.C_scaffold_6000182
Length=1011
Score = 100 bits (54), Expect = 2e-20
Identities = 84/97 (87%), Gaps = 8/97 (8%)
Strand=Plus/Plus
Query 930 GACTAAGGAATGTAAAACAG-AGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTG 988
|||| |||||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 846 GACTGAGGAATGTGAAAC-GAAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGT- 903
Query 989 TTGGAA-AG-G-TTTGTGGATTTGTTGAATGGTCTAA 1022
|| || || | |||| ||||| ||||| ||||||||
Sbjct 904 TT--AACAGAGCTTTGGGGATTCGTTGATTGGTCTAA 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5