BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46060.1
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484985 jgi|Araly1|484985|fgenesh2_kg.5__977__AT3G46060.1 1657 0.0
Ahg496120 jgi|Araly1|496120|fgenesh2_kg.8__1936__AT5G59840.1 815 0.0
> Ahg484985 jgi|Araly1|484985|fgenesh2_kg.5__977__AT3G46060.1
Length=1102
Score = 1657 bits (897), Expect = 0.0
Identities = 1044/1107 (94%), Gaps = 41/1107 (4%)
Strand=Plus/Plus
Query 1 CTCTCTTTTTCTGCGCACTCCTTCGTTTCCAACTAACGTGCGCAGTGTATCCTATCGTGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 CTCTCTTTTTCTGCGCACTCCTTCGTTTCCAACTAACGTGCGCAGTGAATCCTATCGTGC 60
Query 61 ACGCGAAGCAGACGAAGAAGAAGTAAAATAGAAGAAGCCGGGAAACAAAAGCTAAATCGG 120
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 ACGCGAAGCAGACG-A-AAGAAGTAAAATAGAAGAAGCCGGGAAAAAAAAGCTAAATCGG 118
Query 121 GAACTGGCGCATTTTAGTCGTCCGCCATAA------C-CTTCGCTCTCTGATTCTTCCGA 173
| ||||||||||||||| |||||||||||| | ||||||||||||||||||||||
Sbjct 119 G-ACTGGCGCATTTTAGCCGTCCGCCATAACCTTCGCTCTTCGCTCTCTGATTCTTCCGA 177
Query 174 TTACATCGGTTTTCTTCTCTC-TCCGATTCAATGGCTGCTCCACCTGCTAGAGCCAGAGC 232
||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct 178 TTACATCGGTTTTCTTCTC-CGTCCGATTCAATGGCTGCTCCTCCTGCTAGAGCCAGAGC 236
Query 233 TGATTACGATTATCTCATTAAGCTTCTTTTGATTGGAGATAGCGGTGTTGGTAAAAGTTG 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TGATTACGATTATCTCATTAAGCTTCTTTTGATTGGAGATAGCGGTGTTGGTAAAAGTTG 296
Query 293 TCTTCTTCTACGTTTCTCTGATGGATCTTTCACCACTAGCTTCATTACCACCATTGGCAT 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 297 TCTTCTTCTACGTTTCTCTGATGGATCTTTCACCACTAGCTTCATTACCACCATTGGTAT 356
Query 353 TGACTTTAAGATAAGAACGATTGAGCTTGACGGTAAACGTATCAAGCTTCAGATTTGGGA 412
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 357 TGACTTTAAGATAAGAACGATTGAGCTTGATGGTAAACGTATCAAGCTTCAGATTTGGGA 416
Query 413 TACCGCTGGTCAAGAGCGGTTTCGGACTATCACCACTGCTTATTACCGTGGGGCAATGGG 472
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TACTGCTGGTCAAGAGCGGTTTCGGACTATCACCACTGCTTATTACCGTGGGGCAATGGG 476
Query 473 CATTTTGCTGGTGTATGATGTCACAGACGAGTCATCCTTCAACAACATTAGGAACTGGAT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CATTTTGCTGGTGTATGATGTCACAGACGAGTCATCCTTCAACAACATTAGGAACTGGAT 536
Query 533 TCGTAATATCGAACAGCATGCTTCGGATAATGTTAACAAGATCTTGGTAGGGAACAAGGC 592
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 TCGTAACATCGAACAGCATGCTTCAGATAATGTTAACAAGATCTTGGTAGGGAACAAGGC 596
Query 593 TGACATGGATGAAAGCAAGAGGGCAGTACCTACAGCAAAGGGTCAGGCTCTTGCTGATGA 652
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 597 TGACATGGATGAAAGCAAGAGGGCGGTACCTACAGCAAAGGGTCAAGCTCTTGCTGATGA 656
Query 653 GTACGGAATTAAGTTCTTCGAAACAAGTGCCAAGACAAACCTAAACGTGGAAGAAGTTTT 712
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GTACGGAATTAAGTTCTTTGAAACAAGTGCCAAGACAAACCTAAACGTGGAAGAAGTTTT 716
Query 713 CTTCTCAATAGGGAGGGACATTAAGCAGAGGCTTTCAGACACCGACTCGAGGGCAGAGCC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CTTCTCAATAGGGAGGGACATTAAGCAGAGGCTTTCAGACACCGACTCGAGGGCAGAGCC 776
Query 773 TGCAACGATCAAGATAAGCCAAACGGACCAAGCAGCTGGAGCAGGGCAGGCCACACAGAA 832
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 777 TGCAACTATCAAGATAAGCCAAACGGACCAGGCAGCTGGAGCCGGGCAGGCCACACAGAA 836
Query 833 ATCTGCATGCTGTGGAACTTaaaaaagttttaaaagtgaagtttaagtcgaaaaaagttt 892
|||||||||||||||||||||||| ||| || || | || ||||| ||||
Sbjct 837 ATCTGCATGCTGTGGAACTTAAAA---TTT-AA--GTC--G---AA----AAAAA-GTTT 880
Query 893 gggggtgaagtgaaaaa-CTAAGATATCGTTGGGTGCTTATGTAATTTTTTGTTTTATGC 951
|||| |||||||||||| ||||||| |||||||||||| |||||||||| |||||||||
Sbjct 881 GGGG-TGAAGTGAAAAAACTAAGAT--CGTTGGGTGCTTTTGTAATTTTT-GTTTTATGC 936
Query 952 CAACAATTCTGATTCGTTCTTCTAAATTGTCCTTCCTATTTGTACGAAGGTTTAATCGAA 1011
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 937 CAACATTTCTGATTCGTTCT---AAATTGTCCTTCCTATTTGTACGAAGGTTTAATCGAA 993
Query 1012 ACTTGTATTTTT---CTTT-TCTATTACTGATTTTTTATGACGGTGACTGAATTGTTTAT 1067
|| ||||||||| |||| ||| || ||||||||| |||||||||||||||||||| ||
Sbjct 994 ACATGTATTTTTTTTCTTTCTCTGTTGCTGATTTTTAATGACGGTGACTGAATTGTT-AT 1052
Query 1068 GTTGGTCATCACTTCTCTCTATATATC 1094
|||||||||||||||||||||||||||
Sbjct 1053 GTTGGTCATCACTTCTCTCTATATATC 1079
> Ahg496120 jgi|Araly1|496120|fgenesh2_kg.8__1936__AT5G59840.1
Length=924
Score = 815 bits (441), Expect = 0.0
Identities = 588/661 (89%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 195 TCCGATTCAATGGCTGCTCCACCTGCTAGAGCCAGAGCTGATTACGATTATCTCATTAAG 254
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 62 TCCGATTCAATGGCTGCTCCACCTGCTAGGGCTAGAGCTGATTACGATTATCTCATTAAG 121
Query 255 CTTCTTTTGATTGGAGATAGCGGTGTTGGTAAAAGTTGTCTT-CTTCTACGTTTCTCTGA 313
|||||| | || || ||||||||||| |||||||||||| || ||| || | ||||||||
Sbjct 122 CTTCTTCTCATCGGTGATAGCGGTGTGGGTAAAAGTTGT-TTGCTTTTAAGGTTCTCTGA 180
Query 314 TGGATCTTTCACCACTAGCTTCATTACCACCATTGGCATTGACTTTAAGATAAGAACGAT 373
||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 181 TGGTTCTTTCACCACTAGCTTCATCACCACCATTGGTATTGATTTTAAGATAAGAACTAT 240
Query 374 TGAGCTTGACGGTAAACGTATCAAGCTTCAGATTTGGGATACCGCTGGTCAAGAGCGGTT 433
||||||||| || |||||||||||||| ||||||||||| || ||||||||||| || ||
Sbjct 241 TGAGCTTGATGGCAAACGTATCAAGCTCCAGATTTGGGACACTGCTGGTCAAGAACGTTT 300
Query 434 TCGGACTATCACCACTGCTTATTACCGTGGGGCAATGGGCATTTTGCTGGTGTATGATGT 493
||| || |||||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct 301 TCGAACCATCACCACTGCTTATTACCGCGGAGCAATGGGGATTTTACTGGTGTATGATGT 360
Query 494 CACAGACGAGTCATCCTTCAACAACATTAGGAACTGGATTCGTAATATCGAACAGCATGC 553
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 361 CACAGACGAGTCATCCTTCAACAATATTAGAAACTGGATTCGTAATATCGAACAGCACGC 420
Query 554 TTCGGATAATGTTAACAAGATCTTGGTAGGGAACAAGGCTGACATGGATGAAAGCAAGAG 613
||| |||||||| ||||| ||||||||||||||||| ||||||||||| || ||||||||
Sbjct 421 TTCAGATAATGTCAACAAAATCTTGGTAGGGAACAAAGCTGACATGGACGAGAGCAAGAG 480
Query 614 GGCAGTACCTACAGCAAAGGGTCAGGCTCTTGCTGATGAGTACGGAATTAAGTTCTTCGA 673
||| || || | | |||||||||| |||||||||||||| || ||||| |||||||||||
Sbjct 481 GGCTGTGCCAAAATCAAAGGGTCAAGCTCTTGCTGATGAATATGGAATCAAGTTCTTCGA 540
Query 674 AACAAGTGCCAAGACAAACCTAAACGTGGAAGAAGTTTTCTTCTCAATAGGGAGGGACAT 733
|||||||||||| ||||| || || |||||||||||||||||||| |||| | ||||||
Sbjct 541 AACAAGTGCCAAAACAAATCTGAATGTGGAAGAAGTTTTCTTCTCCATAGCAAAGGACAT 600
Query 734 TAAGCAGAGGCTTTCAGACACCGACTCGAGGGCAGAGCCTGCAACGATCAAGATAAGCCA 793
|||||||| || | || || ||||| || ||||||||||||||||||||||| |||||
Sbjct 601 AAAGCAGAGACTCGCTGATACTGACTCTAGAGCAGAGCCTGCAACGATCAAGATCAGCCA 660
Query 794 AACGGACCAAGCAGCTGGAGCAGGGCAGGCCACACAGAAATCTGCATGCTGTGGAACTTa 853
||| ||||| || |||||||| || |||||||||||||| |||||||||||||||| |||
Sbjct 661 AACAGACCAGGCGGCTGGAGCCGGTCAGGCCACACAGAAGTCTGCATGCTGTGGAAGTTA 720
Query 854 a 854
|
Sbjct 721 A 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5