BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46070.1
Length=513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937299 jgi|Araly1|937299|scaffold_501490.1 723 0.0
Ahg484989 jgi|Araly1|484989|fgenesh2_kg.5__981__AT3G46090.1 337 6e-92
> Ahg937299 jgi|Araly1|937299|scaffold_501490.1
Length=555
Score = 723 bits (391), Expect = 0.0
Identities = 475/515 (92%), Gaps = 7/515 (1%)
Strand=Plus/Plus
Query 1 ATGGTTGCTGAAAGTGATAATCGTGATCTGACGGTGGATACGGCGGCGAGCTGTCTGATG 60
|||||||| ||||||||||||| ||||| ||||| |||||||||||||| ||||||||||
Sbjct 24 ATGGTTGCGGAAAGTGATAATCTTGATCCGACGGCGGATACGGCGGCGAACTGTCTGATG 83
Query 61 TTGTTATCAGGAA-TTGGAGAACACGACGGAAGAAAGAAACGTGTTTTCCGATGCAAGAC 119
|||||||| | || |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 84 TTGTTATC-GAAAGTTGGGGAACACGACGGAGGAAAGAAACGTGTTTTCCGATGCAAGAC 142
Query 120 TTGTGAGAGAGACTTCGATTCGTTCCAAGCTTTAGGAGGCCACCGTGCAAGCCACTCGAA 179
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 143 TTGTAAGAGAGACTTCTTTTCGTTCCAAGCTTTAGGAGGCCACCGTGCAAGCCACACGAA 202
Query 180 ACTAACCAACAGTGACGATAAATCACTTCCTGGATCACCAAAGAAGAAGCCTAAAACTAC 239
||| | |||||| |||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 203 ACTTATCAACAGCGACGATAAATCACTACCTGGATCACTTAAGAAGAAGCCTAAAACTAC 262
Query 240 GACTACGACGACGGCTCATACTTGTCCGATTTGTGGCTTGGAGTTTCCGATGGGACAAGC 299
| |||||| || |||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 263 G---ACGACGTCGTCTCATACTTGTCCGATTTGTGGTTTGGATTTTCCGATAGGACAAGC 319
Query 300 TCTTGGTGGTCACATGAGGAAACATAGGAACGAGAAAGAACGAGAAAAGGCTTCTAACGT 359
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 320 TCTTGGTGGTCACATGAGGAAACATAGGAACGAGAAAGAACAAGAAAAGGCCTCTAACGA 379
Query 360 ATTGGTTACGCATTCTTTCATGCCGGAGACGACAACGGTGACGACTTTGAAGAAATCGAG 419
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ATTGGTTACGCGTTCTTTCTTGCCGGAGACGACAACGGTGACGACTTTGAAGAAATCGAG 439
Query 420 TAGTGGGAAGAGAGTGGCGTGTTTGGATTTCGACTTAACTTCGGTGGAGAGCTTTG-TCA 478
|||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |||
Sbjct 440 TAGTGGGAAGAGAGTGGCGTGTTTGGATTTGGACTCAACTTCGGTGGAGAG-TTTGGTCA 498
Query 479 ACACGGAATTGGAGTTGGGAAGAACGATGTACTGA 513
| ||||| ||||||||||||||||| |||||||||
Sbjct 499 ATACGGAGTTGGAGTTGGGAAGAACCATGTACTGA 533
> Ahg484989 jgi|Araly1|484989|fgenesh2_kg.5__981__AT3G46090.1
Length=630
Score = 337 bits (182), Expect = 6e-92
Identities = 396/491 (81%), Gaps = 48/491 (10%)
Strand=Plus/Plus
Query 37 GATACGGCGGCG-AGCTGTCTGATGTTGTTATCAGGAATTGGAGAA-----C----ACGA 86
|||||||||||| || ||| |||||||||||||| || |||||||| | |||
Sbjct 63 GATACGGCGGCGAAG-TGTTTGATGTTGTTATCAAGAGTTGGAGAATGCGGCGGTTACGG 121
Query 87 CGGAAGAAAGAAACGTGTTTTCCGATGCAAGACTTGTGAGAGAGACTTC-GATTCGTTCC 145
|||| || ||||||||||||||||||||||||||||| | ||| ||| | ||||| |
Sbjct 122 CGGAGGAGAGAAACGTGTTTTCCGATGCAAGACTTGTCTTAAAGAGTTCTCA-TCGTTTC 180
Query 146 AAGCTTTAGGAGGCCACCGTGCAAGCCACT-CGAAACTAACCAACAGTGACGATAAATCA 204
||||||||||||| || |||||||| || | |||||| | |||||| |||||| ||||
Sbjct 181 AAGCTTTAGGAGGTCATCGTGCAAGTCA-TAAGAAACTCATTAACAGTCACGATATATCA 239
Query 205 CTTCCTGGATCA---CCAAAGAAGAAGCCTAAAACTACGACTACGACGACGGCTCATACT 261
|||| ||||||| | || |||||| || ||| |||| | |||| ||||| ||
Sbjct 240 CTTCTTGGATCATTGTCTAACAAGAAGACT-AAA--ACGA-T-----GACGTCTCATCCT 290
Query 262 TGTCCGATTTGTGGCTTGGAGTTTCCGATGGGACAAGCTCTTGGTGGTCACATGAGGAAA 321
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 291 TGTCCGATATGTGGCGTGGAGTTTCCGATGGGACAAGCTCTTGGTGGTCACATGAGGAGA 350
Query 322 CATAGGAACGAGAAAGAACGAGAAAAGGCTTCTAACGTATTGGTTACGCATTCTTTCATG 381
|||||||||||||||| | || | ||| |||||||| | |||||| |
Sbjct 351 CATAGGAACGAGAAAG--C-------TTCTGGT-ACG--TTGGTTACACGTTCTTTTTTA 398
Query 382 CCGGAGACGAC-A--ACGGTGACGACTTTGAAGAAATCGAGTAGTGGGAAGAGAGTGGCG 438
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 CCGGAGACGACGACTACGGTGACGACTTTGAAGAAATCGAGTAGTGGGAAGAGAGTGGCT 458
Query 439 TGTTTGGATTTCGACTTA-ACTTCGGTGGAGAGCTTTG-TCAACACGGAA-TTGGAGTTG 495
||||||||||| ||||| | |||| ||||||| |||| |||| |||| |||||||||
Sbjct 459 TGTTTGGATTTTGACTTGGA-TTCGATGGAGAG-TTTGGTCAATT-GGAAGTTGGAGTTG 515
Query 496 GGAAGAACGAT 506
|||||||||||
Sbjct 516 GGAAGAACGAT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18658083021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5