BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46090.1
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484989 jgi|Araly1|484989|fgenesh2_kg.5__981__AT3G46090.1 778 0.0
Ahg937299 jgi|Araly1|937299|scaffold_501490.1 320 7e-87
> Ahg484989 jgi|Araly1|484989|fgenesh2_kg.5__981__AT3G46090.1
Length=630
Score = 778 bits (421), Expect = 0.0
Identities = 572/640 (89%), Gaps = 30/640 (5%)
Strand=Plus/Plus
Query 15 CCTAGAAGTCACTAAGTCGA-TTCAAAATGGTTGCGAGAAGTGAGGAAATTGTGATAGTG 73
|||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 1 CCTAGAAGTCACTAAGTC-ATTTCAAAATGGTTGCGAGAAGTGAGGAAATTGTGAAAGT- 58
Query 74 GAAGAAGATACGACTGCGAAATGTTTGATGTTGTTATCAAGAGTCGGAGAATGCGGCGGC 133
| ||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 59 G--GAAGATACGGCGGCGAAGTGTTTGATGTTGTTATCAAGAGTTGGAGAATGCGGCGGT 116
Query 134 GGCTGCGGGGGAGATG-AACGTGTTTTCCGATGCAAGACTTGTCTTAAAGAGTTCTCATC 192
| |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TACGGCGGAGGAGA-GAAACGTGTTTTCCGATGCAAGACTTGTCTTAAAGAGTTCTCATC 175
Query 193 GTTTCAAGCTTTGGGAGGTCATCGTGCAAGCCACAAGAAACTTATCAACAGTGACAATCC 252
|||||||||||| ||||||||||||||||| || |||||||| || |||||| || ||
Sbjct 176 GTTTCAAGCTTTAGGAGGTCATCGTGCAAGTCATAAGAAACTCATTAACAGTCACGATAT 235
Query 253 ATCACTTCTTGGATCCTTGTCCAACAAGAAAACT--AA--A--ACGTCTCATCCTTGTCC 306
||||||||||||||| ||||| |||||||| ||| || | |||||||||||||||||
Sbjct 236 ATCACTTCTTGGATCATTGTCTAACAAGAAGACTAAAACGATGACGTCTCATCCTTGTCC 295
Query 307 GATATGTGGAGTGAAGTTTCCGATGGGACAAGCTCTTGGTGGTCACATGAGGAGACATAG 366
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GATATGTGGCGTGGAGTTTCCGATGGGACAAGCTCTTGGTGGTCACATGAGGAGACATAG 355
Query 367 GAACGAGAAAGTCT-CAGGCT-CGTTGGTTACACGTTCTTTTCTACCGGAGACGACGAC- 423
||||||||||| || | || | |||||||||||||||||||| ||||||||||||||||
Sbjct 356 GAACGAGAAAG-CTTCTGG-TACGTTGGTTACACGTTCTTTTTTACCGGAGACGACGACT 413
Query 424 --GGTGACGGCTTTGAAGAAATTTAGTAGTGGGAAGAGAGTGGCTTGTTTGGATTTGGAC 481
||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 414 ACGGTGACGACTTTGAAGAAATCGAGTAGTGGGAAGAGAGTGGCTTGTTTGGATTTTGAC 473
Query 482 TTAGATTCGATGGAGAGTTTGGTCAATTGGAAGTTGGAGTTGGGAAGAACGATTTCTTGG 541
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TTGGATTCGATGGAGAGTTTGGTCAATTGGAAGTTGGAGTTGGGAAGAACGATTTCTTG- 532
Query 542 AGTTAAGTTTT-TGGGTTG-T-ATACAGTTTCACATGATTTTGTAATCTTTGTTGATCCA 598
| || ||||| | | || | ||||||||||||||| ||||||||||||||||||||||
Sbjct 533 A-TTC-GTTTTCTTGCTTTATCATACAGTTTCACATGGTTTTGTAATCTTTGTTGATCCA 590
Query 599 ---AT-TATCGTACCGATCGATGTGAATATTATTTTGATA 634
|| |||| |||||||||||||| ||||||||||||||
Sbjct 591 TTTATATATCTTACCGATCGATGTGTATATTATTTTGATA 630
> Ahg937299 jgi|Araly1|937299|scaffold_501490.1
Length=555
Score = 320 bits (173), Expect = 7e-87
Identities = 334/407 (82%), Gaps = 29/407 (7%)
Strand=Plus/Plus
Query 150 AACGTGTTTTCCGATGCAAGACTTGTCTTAAAGAGTTCTCATCGTTTCAAGCTTTGGGAG 209
|||||||||||||||||||||||||| | ||| |||| ||||| |||||||| ||||
Sbjct 121 AACGTGTTTTCCGATGCAAGACTTGTAAGAGAGACTTCTTTTCGTTCCAAGCTTTAGGAG 180
Query 210 GTCATCGTGCAAGCCACAAGAAACTTATCAACAGTGACAATCCATCACTTCTTGGATC-C 268
| || ||||||||||||| ||||||||||||||| ||| || |||||| | |||||| |
Sbjct 181 GCCACCGTGCAAGCCACACGAAACTTATCAACAGCGACGATAAATCACTACCTGGATCAC 240
Query 269 TTGTCCAACAAG---AAAACTA--A--A--ACGTCTCATCCTTGTCCGATATGTGGAGTG 319
|| || ||| ||||||| | | |||||||| |||||||||| ||||| ||
Sbjct 241 TT-AAGAAGAAGCCTAAAACTACGACGACGTCGTCTCATACTTGTCCGATTTGTGGTTTG 299
Query 320 AAGTTTCCGATGGGACAAGCTCTTGGTGGTCACATGAGGAGACATAGGAACGAGAAAGT- 378
| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 GATTTTCCGATAGGACAAGCTCTTGGTGGTCACATGAGGAAACATAGGAACGAGAAAGAA 359
Query 379 CTC-A---GGC-TC----G--TTGGTTACACGTTCTTTTCTA-CCGGAGACGACGACGGT 426
| | ||| || | |||||||| |||||||| || ||||||||||| |||||
Sbjct 360 CAAGAAAAGGCCTCTAACGAATTGGTTACGCGTTCTTT-CTTGCCGGAGACGACAACGGT 418
Query 427 GACGGCTTTGAAGAAATTTAGTAGTGGGAAGAGAGTGGCTTGTTTGGATTTGGACTTAGA 486
|||| |||||||||||| |||||||||||||||||||| |||||||||||||||| | |
Sbjct 419 GACGACTTTGAAGAAATCGAGTAGTGGGAAGAGAGTGGCGTGTTTGGATTTGGACTCA-A 477
Query 487 -TTCGATGGAGAGTTTGGTCAATT-GGAAGTTGGAGTTGGGAAGAAC 531
|||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 478 CTTCGGTGGAGAGTTTGGTCAATACGGA-GTTGGAGTTGGGAAGAAC 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23254979370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5