BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46100.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487115 jgi|Araly1|487115|fgenesh2_kg.6__249__AT3G46100.1 2194 0.0
Ahg937302 jgi|Araly1|937302|scaffold_501493.1 1068 0.0
Ahg897420 jgi|Araly1|897420|Al_scaffold_0005_1386 364 9e-100
> Ahg487115 jgi|Araly1|487115|fgenesh2_kg.6__249__AT3G46100.1
Length=1478
Score = 2194 bits (1188), Expect = 0.0
Identities = 1393/1489 (94%), Gaps = 25/1489 (2%)
Strand=Plus/Plus
Query 43 AAGAGAGATGCGAGCGATTCATATCGTGACGACGCGATTGAGCTCGAGC--T-TTAGACC 99
||||||||||||||| ||||| ||||||||||||||||||||||||||| | |||| ||
Sbjct 3 AAGAGAGATGCGAGCAATTCACATCGTGACGACGCGATTGAGCTCGAGCTTTATTAGGCC 62
Query 100 TATTCTTCTTCTTGACTTGGTTTCTTCTTGTTCGCCTCCTCGACAGTTCTCTATCCCTAG 159
|| ||||||||||||| | | |||||||||||||| ||| |||||||||||||||||
Sbjct 63 TA---TTCTTCTTGACTTCG--T-TTCTTGTTCGCCTCTTCGCCAGTTCTCTATCCCTAG 116
Query 160 GCGCCTAATCTGTG-C-CG-CC---GCCAATGGAGGAGGCAGGTCAGGTTCCATTGTTGC 213
|||| | ||||||| | || || |||||||||||||||||||||||||| ||||||||
Sbjct 117 GCGCTTTATCTGTGCCGCGACCAAGGCCAATGGAGGAGGCAGGTCAGGTTCGATTGTTGC 176
Query 214 TCCTTTGGTGACTGAA-GAAGACTTTCACAAGAAGATCGATGTCAATCCTCCTAAAGGAA 272
||| |||||| |||| ||||| ||| | ||||||||||||||||||||||||||| ||
Sbjct 177 TCCATTGGTG-GTGAATGAAGAATTT--C-AGAAGATCGATGTCAATCCTCCTAAAGAAA 232
Query 273 CTCGTGATTTTCCTCCTGAGGATATGCGTCTCCGCAATTGGCTCTTTAACCACTTCAAAG 332
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 233 CTCGTGATTTCCCTCCTGAGGATATGCGACTCCGCAATTGGCTCTTCAACCACTTCAAAG 292
Query 333 AGGTCTCACGGTTATATGGGTATGAGGAAGTGGATTATCCAGTACTGGAGACGGAGGCAT 392
||||||||||||| | ||||| |||||||||||||| ||||||||||||||| |||||||
Sbjct 293 AGGTCTCACGGTTGTTTGGGTTTGAGGAAGTGGATTTTCCAGTACTGGAGACTGAGGCAT 352
Query 393 TGTTCATCAGAAAAGCTGGGGAAGAGATTAGAGACCAACTTTACTGCTTTGAAGATAGAG 452
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 353 TGTTCATCAGAAAAGCAGGGGAGGAGATTAGAGACCAACTTTACTGCTTTGAAGATAGGG 412
Query 453 GAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATAC 512
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GTAATCGCCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATAC 472
Query 513 AGAAAGGAAAATCTGTTTCCCTTCCATTGAAGTGGTTTGCAATTGGGCAGTGTTGGCGAT 572
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 473 AGAAAGGAAAATCCGTTTCCCTTCCATTGAAGTGGTTTGCTGTTGGGCAGTGTTGGCGCT 532
Query 573 ATGAGAGAATGACAAGAGGAAGGCGACGTGAGCATTACCAATGGAATATGGATATTATTG 632
||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 533 ATGAGCGAATGACTAGAGGAAGGCGACGTGAGCATTACCAGTGGAATATGGATATTATTG 592
Query 633 GTGTGCCTCAAGTAACTGCTGAAGCAGAACTAATTTCATCTATAGTCACCTTCTTCAAGC 692
|||||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 593 GTGTGCCTGAAGTTACAGCTGAAGCAGAACTAATTTCATCTATAGTCACTTTCTTCAAGC 652
Query 693 GAATTGGAATCACTGCGTCAGATGTGGGTTTTAAGGTTTCAAGCCGCAAGGTTTTACAAG 752
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GGATTGGAATCACTGCATCAGATGTGGGTTTTAAGGTTTCAAGCCGCAAGGTTTTACAAG 712
Query 753 AATTGCTAAAAAAGTATGGTGTACCCGAAGACCTGTTTGGAAGAGTTTGTATCATTATAG 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AATTGCTAAAAAAGTATGGTGTACCCGAAGACCTGTTTGGAAGAGTTTGTATCATTATAG 772
Query 813 ACAAGATAGAAAAGATACCAATTGATGAAATAAAAAAGGAACTTGGGTTCACGGG-GATA 871
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || | ||
Sbjct 773 ACAAGATAGAAAAGATTCCAATTGATGAAATAAAAAAGGAACTTGGGTTCACTGGCG-TA 831
Query 872 TCAGAAGATGCTATTGAACAATTACTGCAAGTGCTTTCTGTGAAGTCCTTGGATGATTTG 931
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 832 TCAGAAGATGCTATTGAACAGTTATTGCAAGTGCTTTCTGTGAAGTCCTTGGATGATTTG 891
Query 932 GAAGATATAATTGGTGGAGCAGGAGAAGCCATTGCAGATTTGAAACAACTCTTCTCACTT 991
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 892 GAAGATATACTTGGTGGAGCCGGAGAAGCCATTGCAGATTTGAAACAACTCTTCTCGCTT 951
Query 992 GCTGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTT 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 952 GCTGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGTGGTCTT 1011
Query 1052 GCTTATTACACTGGTATCGTCTTCGAGGGATTTGATCGAAAAGGGAAGCTGCGAGCTATA 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GCTTATTACACTGGTATCGTCTTCGAGGGATTTGATCGAAAAGGGAAGCTGCGAGCTATA 1071
Query 1112 TGTGGTGGTGGGAGATATGATAGGTTACTCTCTACTTATGGAGGTGATGACTTTCCTGCT 1171
|||||||||||||||||||| || |||||||| || ||||||||||||||| ||||||||
Sbjct 1072 TGTGGTGGTGGGAGATATGACAGATTACTCTCCACGTATGGAGGTGATGACATTCCTGCT 1131
Query 1172 TGTGGTTTTGGTTTCGGCGATGCTGTAATAGTTGAATTGCTCAAAGAGAAGGATTTGTTG 1231
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1132 TGTGGTTTTGGTTTCGGCGATGCTGTAATTGTTGAATTGCTCAAGGAGAAGGATTTGTTG 1191
Query 1232 CCAGAACTGGGACAAGAAGTAGAGAACATAGTGTGTGCGTTGGACAAAGATCTCCAAGGA 1291
|||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1192 CCAGAATTGGGACAAGAAGTAGAGAACATTGTGTGTGCTTTGGACAAAGATCTCCAAGGA 1251
Query 1292 GCTGCAGCCACAGTTGCAAC-AGCTCTCAGAGACAAAGGCCAAACCGTTGATTTGGTATT 1350
||||||||||| |||||||| | |||||||||||||||||||| |||||||||| |||||
Sbjct 1252 GCTGCAGCCACCGTTGCAACCA-CTCTCAGAGACAAAGGCCAATCCGTTGATTTAGTATT 1310
Query 1351 AGAGAGTAAACCGCTGAAATGGGTGTTCAAGAGAGCAGCTCGGGTAAACGCAAGAAGGCT 1410
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1311 GGAGAGTAAACCGCTGAAATGGGTGTTCAAGAGAGCGGCTCGGGTAAACGCAAGAAGGCT 1370
Query 1411 GGTTCTGGTTGGGAAAACAGAGTGGGAAGATGGTTCGGTCAGTGTTAAGGTGTTGTCTTC 1470
|||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1371 GGTTCTCGTTGGGAAGACAGAGTGGGAAGATGGTTCGGTCAGTGTCAAGGTTTTGTCTTC 1430
Query 1471 AGGTGAGCAGTTCCAAGTCAAACTCAGTGACTTAGAGTAGTATCTTAAG 1519
||||||||| || ||||||||||| | |||||| ||||||||||| |||
Sbjct 1431 AGGTGAGCAATTTCAAGTCAAACTTAATGACTTGGAGTAGTATCT-AAG 1478
> Ahg937302 jgi|Araly1|937302|scaffold_501493.1
Length=1371
Score = 1068 bits (578), Expect = 0.0
Identities = 680/725 (94%), Gaps = 23/725 (3%)
Strand=Plus/Plus
Query 29 TCAGCTGAAGCAGAAAGAGAGATGCGAGCGATTCATATCGTGACGACGCGATTGAGCTCG 88
|||||||||| ||||| |||||||||||||||||||| | |||||||||||||
Sbjct 1 TCAGCTGAAGAAGAAA-AGAGATGCGAGCGATTCATA---T------GCGATTGAGCTCG 50
Query 89 AGCTTTAGACCTATTCTTCTTCTTGACTTGGTT-TCTTCTTGTTCG---CCTCCTCGAC- 143
|||||||| |||||||||||||||||||| ||| | |||||||||| |||||||| |
Sbjct 51 AGCTTTAGGCCTATTCTTCTTCTTGACTTCGTTGT-TTCTTGTTCGCCTCCTCCTCG-CG 108
Query 144 AGTTCTCTATCCCTAGGCGCCTAATCTGTGCCGCCGCCAATGGAGGAGGCAGGTCAGGTT 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 AGTTCTCTATCCCTAGGCGCCTAATCTGTGCCGCCGCCAATGGAGGAGGCAGGTCAGGTT 168
Query 204 CCATTGTTGC---TCCTTTGGT-G--ACTGAAGAAGACTTTCACAAGAAGATCGATGTCA 257
| ||||| || ||| ||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 169 CGATTGTGGCGGCTCCGTTGGTTGTGACTGAAGAAGACTTTCAGAAGAAGATCGATGTCA 228
Query 258 ATCCTCCTAAAGGAACTCGTGATTTTCCTCCTGAGGATATGCGTCTCCGCAATTGGCTCT 317
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 229 ATCCTCCTAAAGGAACTCGTGATTTCCCTCCTGAGGATATGCGACTCCGCAATTGGCTCT 288
Query 318 TTAACCACTTCAAAGAGGTCTCACGGTTATATGGGTATGAGGAAGTGGATTATCCAGTAC 377
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 289 TCAACCACTTCAAAGAGGTCTCACGGTTATATGGGTTTGAGGAAGTGGATTATCCAGTAC 348
Query 378 TGGAGACGGAGGCATTGTTCATCAGAAAAGCTGGGGAAGAGATTAGAGACCAACTTTACT 437
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 349 TGGAGACGGAGGCATTGTTCATCAGAAAAGCAGGGGAAGAGATTAGAGACCAACTGTACT 408
Query 438 GCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAG 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GCTTTGAAGATAGGGGAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAG 468
Query 498 CCAGGCTTGTCATACAGAAAGGAAAATCTGTTTCCCTTCCATTGAAGTGGTTTGCAATTG 557
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 469 CAAGGCTTGTCATACAGAAAGGAAAATCTGTTTCCCTTCCATTGAAGTGGTTTGCTGTTG 528
Query 558 GGCAGTGTTGGCGATATGAGAGAATGACAAGAGGAAGGCGACGTGAGCATTACCAATGGA 617
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 529 GGCAGTGTTGGCGATATGAGAGAATGACTAGAGGAAGGCGACGTGAGCATTACCAGTGGA 588
Query 618 ATATGGATATTATTGGTGTGCCTCAAGTAACTGCTGAAGCAGAACTAATTTCATCTATAG 677
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 589 ATATGGATATTATTGGTGTGCCTCAAGTAACTGCTGAAGCGGAACTAATTTCATCTATCG 648
Query 678 TCACCTTCTTCAAGCGAATTGGAATCACTGCGTCAGATGTGGGTTTTAAGGTTTCAAGCC 737
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 649 TCACCTTCTTCAAGCGAATTGGAATCACTGCATCAGATGTGGGTTTTAAGGTTTCAAGCC 708
Query 738 GCAAG 742
|||||
Sbjct 709 GCAAG 713
Score = 1005 bits (544), Expect = 0.0
Identities = 642/685 (94%), Gaps = 23/685 (3%)
Strand=Plus/Plus
Query 814 CAAGATAGAAAAGATACCAATTGATGAAATAAAAAAGGAACTTGGGTTCACGGGGATATC 873
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 710 CAAGATAGAAAAGATTCCAATTGATGAAATCAAAAAGGAACTTGGGTTCACGGGAATATC 769
Query 874 AGAAGATGCTATTGAACAATTACTGCAAGTGCTTTCTGTGAAGTCCTTGGATGATTTGGA 933
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 770 AGAAGATGCTATTGAACAGTTACTGCAAGTGCTTTCTGTGAAGTCATTGGATGATTTGGA 829
Query 934 AGATATAATTGGTGGAGCAGGAGAAGCCATTGCAGATTTGAAACAACTCTTCTCACTTGC 993
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AGATATACTTGGTGGAGCAGGAGAAGCCATTGCAGATTTGAAACAACTCTTCTCACTTGC 889
Query 994 TGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTTGC 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTTGC 949
Query 1054 TTATTACACTGGTATCGTCTTCGAGGGATTTGATCGAAAAGGGAAGCTGCGAGCTATATG 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TTATTACACTGGTATCGTCTTCGAGGGATTTGATCGAAAAGGGAAGCTGCGAGCTATATG 1009
Query 1114 TGGTGGTGGGAGATATGATAGGTTACTCTCTACTTATGGAGGTGATGACTTTCCTGCTTG 1173
|||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct 1010 TGGTGGTGGGAGATATGACAGATTACTCTCTACTTATGGAGGTGATGACATTCCTGCTTG 1069
Query 1174 TGGTTTTGGTTTCGGCGATGCTGTAATAGTTGAATTGCTCAAAGAGAAGGATTTGTTGCC 1233
||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 1070 TGGTTTTGGTTTCGGCGATGCTGTAATTTTTGAATTGCTCAAGGAGAAGGATTTGCTGCC 1129
Query 1234 AGAACTGGGACAAGAAGTAGAGAACATAGTGTGTGCGTTGGACAAAGATCTCCAAGGAGC 1293
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1130 AGAACTAGGACAAGAAGTAGAGAACATAGTGTGTGCTTTGGACAAAGATCTCCAAGGAGC 1189
Query 1294 TGCAGCCACAGTTGCAACAGCTCTCAGAGACAAAGGCCAAACCGTTGATTTGGTATTAGA 1353
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1190 TGCAGCCACCGTTGCAACCGCTCTCAGAGACAAAGGCCAAACCGTTGATTTGGTATTGGA 1249
Query 1354 GAGTAAACCGCTGAAATGGGTGTTCAAGAGAGCAGCTCGGGTAAACGCAAGAAGGCTGGT 1413
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1250 GAGTAAACCGCTGAAATGGGTGTTCAAGAGGGCAGCTCGGGTAAACGCAAGAAGGCTGG- 1308
Query 1414 TCTGGTTGGGAAAACAGAGTGGGAAGATGGTTCGGTCAGTGTTAAGGTGTTGTCTTCAGG 1473
| || || ||| | | |||||||||| |||||||||||||||||
Sbjct 1309 ---G------AA----GA-TGG-----T--T-CGGTCAGTGTCAAGGTGTTGTCTTCAGG 1346
Query 1474 TGAGCAGTTCCAAGTCAAACTCAGT 1498
|||||||||||||||||||||||||
Sbjct 1347 TGAGCAGTTCCAAGTCAAACTCAGT 1371
> Ahg897420 jgi|Araly1|897420|Al_scaffold_0005_1386
Length=372
Score = 364 bits (197), Expect = 9e-100
Identities = 247/269 (92%), Gaps = 11/269 (4%)
Strand=Plus/Plus
Query 76 GCGATTGAGCTCGAGCTTTAGACCTATTCTTCTTCTTGACTTGGTT-TCTTCTTGTTCGC 134
||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||
Sbjct 18 GCGATTGAGCTCGAGCTTTAGGCCTATTCTTCTTCTTGACTTCGTTGT-TTCTTGTTCGC 76
Query 135 CT-C-C-TCGACAGTTCTCTATCCCTAGGCGCCTAATCTGTGCCGCCGCCAATGGAGGAG 191
|| | | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 77 CTCCTCGTCGCCAGTTCTCTATTCCTAGGCGCCTAATCTGTGCCGCCGCCAATGGAGGAG 136
Query 192 GCAGGTCAGGTTCCATTGTTGC---TCCTTTGGT-G--ACTGAAGAAGACTTTCACAAGA 245
||||||||||||| ||||| || ||| ||||| | ||||||||||||||||| ||||
Sbjct 137 GCAGGTCAGGTTCGATTGTGGCGGCTCCGTTGGTTGTGACTGAAGAAGACTTTCAGAAGA 196
Query 246 AGATCGATGTCAATCCTCCTAAAGGAACTCGTGATTTTCCTCCTGAGGATATGCGTCTCC 305
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 197 AGATCGATGTCAATCCTCCTAAAGGAACTCGTGATTTCCCTCCTGAGGATATGCGACTCC 256
Query 306 GCAATTGGCTCTTTAACCACTTCAAAGAG 334
||||||||||||| |||||||||||||||
Sbjct 257 GCAATTGGCTCTTCAACCACTTCAAAGAG 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5