BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46100.1 Length=1660 Score E Sequences producing significant alignments: (Bits) Value Ahg487115 jgi|Araly1|487115|fgenesh2_kg.6__249__AT3G46100.1 2194 0.0 Ahg937302 jgi|Araly1|937302|scaffold_501493.1 1068 0.0 Ahg897420 jgi|Araly1|897420|Al_scaffold_0005_1386 364 9e-100 > Ahg487115 jgi|Araly1|487115|fgenesh2_kg.6__249__AT3G46100.1 Length=1478 Score = 2194 bits (1188), Expect = 0.0 Identities = 1393/1489 (94%), Gaps = 25/1489 (2%) Strand=Plus/Plus Query 43 AAGAGAGATGCGAGCGATTCATATCGTGACGACGCGATTGAGCTCGAGC--T-TTAGACC 99 ||||||||||||||| ||||| ||||||||||||||||||||||||||| | |||| || Sbjct 3 AAGAGAGATGCGAGCAATTCACATCGTGACGACGCGATTGAGCTCGAGCTTTATTAGGCC 62 Query 100 TATTCTTCTTCTTGACTTGGTTTCTTCTTGTTCGCCTCCTCGACAGTTCTCTATCCCTAG 159 || ||||||||||||| | | |||||||||||||| ||| ||||||||||||||||| Sbjct 63 TA---TTCTTCTTGACTTCG--T-TTCTTGTTCGCCTCTTCGCCAGTTCTCTATCCCTAG 116 Query 160 GCGCCTAATCTGTG-C-CG-CC---GCCAATGGAGGAGGCAGGTCAGGTTCCATTGTTGC 213 |||| | ||||||| | || || |||||||||||||||||||||||||| |||||||| Sbjct 117 GCGCTTTATCTGTGCCGCGACCAAGGCCAATGGAGGAGGCAGGTCAGGTTCGATTGTTGC 176 Query 214 TCCTTTGGTGACTGAA-GAAGACTTTCACAAGAAGATCGATGTCAATCCTCCTAAAGGAA 272 ||| |||||| |||| ||||| ||| | ||||||||||||||||||||||||||| || Sbjct 177 TCCATTGGTG-GTGAATGAAGAATTT--C-AGAAGATCGATGTCAATCCTCCTAAAGAAA 232 Query 273 CTCGTGATTTTCCTCCTGAGGATATGCGTCTCCGCAATTGGCTCTTTAACCACTTCAAAG 332 |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 233 CTCGTGATTTCCCTCCTGAGGATATGCGACTCCGCAATTGGCTCTTCAACCACTTCAAAG 292 Query 333 AGGTCTCACGGTTATATGGGTATGAGGAAGTGGATTATCCAGTACTGGAGACGGAGGCAT 392 ||||||||||||| | ||||| |||||||||||||| ||||||||||||||| ||||||| Sbjct 293 AGGTCTCACGGTTGTTTGGGTTTGAGGAAGTGGATTTTCCAGTACTGGAGACTGAGGCAT 352 Query 393 TGTTCATCAGAAAAGCTGGGGAAGAGATTAGAGACCAACTTTACTGCTTTGAAGATAGAG 452 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | Sbjct 353 TGTTCATCAGAAAAGCAGGGGAGGAGATTAGAGACCAACTTTACTGCTTTGAAGATAGGG 412 Query 453 GAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATAC 512 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 GTAATCGCCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATAC 472 Query 513 AGAAAGGAAAATCTGTTTCCCTTCCATTGAAGTGGTTTGCAATTGGGCAGTGTTGGCGAT 572 ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | Sbjct 473 AGAAAGGAAAATCCGTTTCCCTTCCATTGAAGTGGTTTGCTGTTGGGCAGTGTTGGCGCT 532 Query 573 ATGAGAGAATGACAAGAGGAAGGCGACGTGAGCATTACCAATGGAATATGGATATTATTG 632 ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 533 ATGAGCGAATGACTAGAGGAAGGCGACGTGAGCATTACCAGTGGAATATGGATATTATTG 592 Query 633 GTGTGCCTCAAGTAACTGCTGAAGCAGAACTAATTTCATCTATAGTCACCTTCTTCAAGC 692 |||||||| |||| || |||||||||||||||||||||||||||||||| |||||||||| Sbjct 593 GTGTGCCTGAAGTTACAGCTGAAGCAGAACTAATTTCATCTATAGTCACTTTCTTCAAGC 652 Query 693 GAATTGGAATCACTGCGTCAGATGTGGGTTTTAAGGTTTCAAGCCGCAAGGTTTTACAAG 752 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 GGATTGGAATCACTGCATCAGATGTGGGTTTTAAGGTTTCAAGCCGCAAGGTTTTACAAG 712 Query 753 AATTGCTAAAAAAGTATGGTGTACCCGAAGACCTGTTTGGAAGAGTTTGTATCATTATAG 812 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 AATTGCTAAAAAAGTATGGTGTACCCGAAGACCTGTTTGGAAGAGTTTGTATCATTATAG 772 Query 813 ACAAGATAGAAAAGATACCAATTGATGAAATAAAAAAGGAACTTGGGTTCACGGG-GATA 871 |||||||||||||||| ||||||||||||||||||||||||||||||||||| || | || Sbjct 773 ACAAGATAGAAAAGATTCCAATTGATGAAATAAAAAAGGAACTTGGGTTCACTGGCG-TA 831 Query 872 TCAGAAGATGCTATTGAACAATTACTGCAAGTGCTTTCTGTGAAGTCCTTGGATGATTTG 931 |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 832 TCAGAAGATGCTATTGAACAGTTATTGCAAGTGCTTTCTGTGAAGTCCTTGGATGATTTG 891 Query 932 GAAGATATAATTGGTGGAGCAGGAGAAGCCATTGCAGATTTGAAACAACTCTTCTCACTT 991 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 892 GAAGATATACTTGGTGGAGCCGGAGAAGCCATTGCAGATTTGAAACAACTCTTCTCGCTT 951 Query 992 GCTGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTT 1051 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 952 GCTGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGTGGTCTT 1011 Query 1052 GCTTATTACACTGGTATCGTCTTCGAGGGATTTGATCGAAAAGGGAAGCTGCGAGCTATA 1111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 GCTTATTACACTGGTATCGTCTTCGAGGGATTTGATCGAAAAGGGAAGCTGCGAGCTATA 1071 Query 1112 TGTGGTGGTGGGAGATATGATAGGTTACTCTCTACTTATGGAGGTGATGACTTTCCTGCT 1171 |||||||||||||||||||| || |||||||| || ||||||||||||||| |||||||| Sbjct 1072 TGTGGTGGTGGGAGATATGACAGATTACTCTCCACGTATGGAGGTGATGACATTCCTGCT 1131 Query 1172 TGTGGTTTTGGTTTCGGCGATGCTGTAATAGTTGAATTGCTCAAAGAGAAGGATTTGTTG 1231 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1132 TGTGGTTTTGGTTTCGGCGATGCTGTAATTGTTGAATTGCTCAAGGAGAAGGATTTGTTG 1191 Query 1232 CCAGAACTGGGACAAGAAGTAGAGAACATAGTGTGTGCGTTGGACAAAGATCTCCAAGGA 1291 |||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1192 CCAGAATTGGGACAAGAAGTAGAGAACATTGTGTGTGCTTTGGACAAAGATCTCCAAGGA 1251 Query 1292 GCTGCAGCCACAGTTGCAAC-AGCTCTCAGAGACAAAGGCCAAACCGTTGATTTGGTATT 1350 ||||||||||| |||||||| | |||||||||||||||||||| |||||||||| ||||| Sbjct 1252 GCTGCAGCCACCGTTGCAACCA-CTCTCAGAGACAAAGGCCAATCCGTTGATTTAGTATT 1310 Query 1351 AGAGAGTAAACCGCTGAAATGGGTGTTCAAGAGAGCAGCTCGGGTAAACGCAAGAAGGCT 1410 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1311 GGAGAGTAAACCGCTGAAATGGGTGTTCAAGAGAGCGGCTCGGGTAAACGCAAGAAGGCT 1370 Query 1411 GGTTCTGGTTGGGAAAACAGAGTGGGAAGATGGTTCGGTCAGTGTTAAGGTGTTGTCTTC 1470 |||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1371 GGTTCTCGTTGGGAAGACAGAGTGGGAAGATGGTTCGGTCAGTGTCAAGGTTTTGTCTTC 1430 Query 1471 AGGTGAGCAGTTCCAAGTCAAACTCAGTGACTTAGAGTAGTATCTTAAG 1519 ||||||||| || ||||||||||| | |||||| ||||||||||| ||| Sbjct 1431 AGGTGAGCAATTTCAAGTCAAACTTAATGACTTGGAGTAGTATCT-AAG 1478 > Ahg937302 jgi|Araly1|937302|scaffold_501493.1 Length=1371 Score = 1068 bits (578), Expect = 0.0 Identities = 680/725 (94%), Gaps = 23/725 (3%) Strand=Plus/Plus Query 29 TCAGCTGAAGCAGAAAGAGAGATGCGAGCGATTCATATCGTGACGACGCGATTGAGCTCG 88 |||||||||| ||||| |||||||||||||||||||| | ||||||||||||| Sbjct 1 TCAGCTGAAGAAGAAA-AGAGATGCGAGCGATTCATA---T------GCGATTGAGCTCG 50 Query 89 AGCTTTAGACCTATTCTTCTTCTTGACTTGGTT-TCTTCTTGTTCG---CCTCCTCGAC- 143 |||||||| |||||||||||||||||||| ||| | |||||||||| |||||||| | Sbjct 51 AGCTTTAGGCCTATTCTTCTTCTTGACTTCGTTGT-TTCTTGTTCGCCTCCTCCTCG-CG 108 Query 144 AGTTCTCTATCCCTAGGCGCCTAATCTGTGCCGCCGCCAATGGAGGAGGCAGGTCAGGTT 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 109 AGTTCTCTATCCCTAGGCGCCTAATCTGTGCCGCCGCCAATGGAGGAGGCAGGTCAGGTT 168 Query 204 CCATTGTTGC---TCCTTTGGT-G--ACTGAAGAAGACTTTCACAAGAAGATCGATGTCA 257 | ||||| || ||| ||||| | ||||||||||||||||| |||||||||||||||| Sbjct 169 CGATTGTGGCGGCTCCGTTGGTTGTGACTGAAGAAGACTTTCAGAAGAAGATCGATGTCA 228 Query 258 ATCCTCCTAAAGGAACTCGTGATTTTCCTCCTGAGGATATGCGTCTCCGCAATTGGCTCT 317 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 229 ATCCTCCTAAAGGAACTCGTGATTTCCCTCCTGAGGATATGCGACTCCGCAATTGGCTCT 288 Query 318 TTAACCACTTCAAAGAGGTCTCACGGTTATATGGGTATGAGGAAGTGGATTATCCAGTAC 377 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 289 TCAACCACTTCAAAGAGGTCTCACGGTTATATGGGTTTGAGGAAGTGGATTATCCAGTAC 348 Query 378 TGGAGACGGAGGCATTGTTCATCAGAAAAGCTGGGGAAGAGATTAGAGACCAACTTTACT 437 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 349 TGGAGACGGAGGCATTGTTCATCAGAAAAGCAGGGGAAGAGATTAGAGACCAACTGTACT 408 Query 438 GCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAG 497 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 GCTTTGAAGATAGGGGAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAG 468 Query 498 CCAGGCTTGTCATACAGAAAGGAAAATCTGTTTCCCTTCCATTGAAGTGGTTTGCAATTG 557 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 469 CAAGGCTTGTCATACAGAAAGGAAAATCTGTTTCCCTTCCATTGAAGTGGTTTGCTGTTG 528 Query 558 GGCAGTGTTGGCGATATGAGAGAATGACAAGAGGAAGGCGACGTGAGCATTACCAATGGA 617 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 529 GGCAGTGTTGGCGATATGAGAGAATGACTAGAGGAAGGCGACGTGAGCATTACCAGTGGA 588 Query 618 ATATGGATATTATTGGTGTGCCTCAAGTAACTGCTGAAGCAGAACTAATTTCATCTATAG 677 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 589 ATATGGATATTATTGGTGTGCCTCAAGTAACTGCTGAAGCGGAACTAATTTCATCTATCG 648 Query 678 TCACCTTCTTCAAGCGAATTGGAATCACTGCGTCAGATGTGGGTTTTAAGGTTTCAAGCC 737 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 649 TCACCTTCTTCAAGCGAATTGGAATCACTGCATCAGATGTGGGTTTTAAGGTTTCAAGCC 708 Query 738 GCAAG 742 ||||| Sbjct 709 GCAAG 713 Score = 1005 bits (544), Expect = 0.0 Identities = 642/685 (94%), Gaps = 23/685 (3%) Strand=Plus/Plus Query 814 CAAGATAGAAAAGATACCAATTGATGAAATAAAAAAGGAACTTGGGTTCACGGGGATATC 873 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 710 CAAGATAGAAAAGATTCCAATTGATGAAATCAAAAAGGAACTTGGGTTCACGGGAATATC 769 Query 874 AGAAGATGCTATTGAACAATTACTGCAAGTGCTTTCTGTGAAGTCCTTGGATGATTTGGA 933 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 770 AGAAGATGCTATTGAACAGTTACTGCAAGTGCTTTCTGTGAAGTCATTGGATGATTTGGA 829 Query 934 AGATATAATTGGTGGAGCAGGAGAAGCCATTGCAGATTTGAAACAACTCTTCTCACTTGC 993 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 AGATATACTTGGTGGAGCAGGAGAAGCCATTGCAGATTTGAAACAACTCTTCTCACTTGC 889 Query 994 TGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTTGC 1053 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 890 TGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTTGC 949 Query 1054 TTATTACACTGGTATCGTCTTCGAGGGATTTGATCGAAAAGGGAAGCTGCGAGCTATATG 1113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 TTATTACACTGGTATCGTCTTCGAGGGATTTGATCGAAAAGGGAAGCTGCGAGCTATATG 1009 Query 1114 TGGTGGTGGGAGATATGATAGGTTACTCTCTACTTATGGAGGTGATGACTTTCCTGCTTG 1173 |||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| Sbjct 1010 TGGTGGTGGGAGATATGACAGATTACTCTCTACTTATGGAGGTGATGACATTCCTGCTTG 1069 Query 1174 TGGTTTTGGTTTCGGCGATGCTGTAATAGTTGAATTGCTCAAAGAGAAGGATTTGTTGCC 1233 ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| Sbjct 1070 TGGTTTTGGTTTCGGCGATGCTGTAATTTTTGAATTGCTCAAGGAGAAGGATTTGCTGCC 1129 Query 1234 AGAACTGGGACAAGAAGTAGAGAACATAGTGTGTGCGTTGGACAAAGATCTCCAAGGAGC 1293 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1130 AGAACTAGGACAAGAAGTAGAGAACATAGTGTGTGCTTTGGACAAAGATCTCCAAGGAGC 1189 Query 1294 TGCAGCCACAGTTGCAACAGCTCTCAGAGACAAAGGCCAAACCGTTGATTTGGTATTAGA 1353 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1190 TGCAGCCACCGTTGCAACCGCTCTCAGAGACAAAGGCCAAACCGTTGATTTGGTATTGGA 1249 Query 1354 GAGTAAACCGCTGAAATGGGTGTTCAAGAGAGCAGCTCGGGTAAACGCAAGAAGGCTGGT 1413 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1250 GAGTAAACCGCTGAAATGGGTGTTCAAGAGGGCAGCTCGGGTAAACGCAAGAAGGCTGG- 1308 Query 1414 TCTGGTTGGGAAAACAGAGTGGGAAGATGGTTCGGTCAGTGTTAAGGTGTTGTCTTCAGG 1473 | || || ||| | | |||||||||| ||||||||||||||||| Sbjct 1309 ---G------AA----GA-TGG-----T--T-CGGTCAGTGTCAAGGTGTTGTCTTCAGG 1346 Query 1474 TGAGCAGTTCCAAGTCAAACTCAGT 1498 ||||||||||||||||||||||||| Sbjct 1347 TGAGCAGTTCCAAGTCAAACTCAGT 1371 > Ahg897420 jgi|Araly1|897420|Al_scaffold_0005_1386 Length=372 Score = 364 bits (197), Expect = 9e-100 Identities = 247/269 (92%), Gaps = 11/269 (4%) Strand=Plus/Plus Query 76 GCGATTGAGCTCGAGCTTTAGACCTATTCTTCTTCTTGACTTGGTT-TCTTCTTGTTCGC 134 ||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||| Sbjct 18 GCGATTGAGCTCGAGCTTTAGGCCTATTCTTCTTCTTGACTTCGTTGT-TTCTTGTTCGC 76 Query 135 CT-C-C-TCGACAGTTCTCTATCCCTAGGCGCCTAATCTGTGCCGCCGCCAATGGAGGAG 191 || | | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 77 CTCCTCGTCGCCAGTTCTCTATTCCTAGGCGCCTAATCTGTGCCGCCGCCAATGGAGGAG 136 Query 192 GCAGGTCAGGTTCCATTGTTGC---TCCTTTGGT-G--ACTGAAGAAGACTTTCACAAGA 245 ||||||||||||| ||||| || ||| ||||| | ||||||||||||||||| |||| Sbjct 137 GCAGGTCAGGTTCGATTGTGGCGGCTCCGTTGGTTGTGACTGAAGAAGACTTTCAGAAGA 196 Query 246 AGATCGATGTCAATCCTCCTAAAGGAACTCGTGATTTTCCTCCTGAGGATATGCGTCTCC 305 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 197 AGATCGATGTCAATCCTCCTAAAGGAACTCGTGATTTCCCTCCTGAGGATATGCGACTCC 256 Query 306 GCAATTGGCTCTTTAACCACTTCAAAGAG 334 ||||||||||||| ||||||||||||||| Sbjct 257 GCAATTGGCTCTTCAACCACTTCAAAGAG 285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62239460330 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5