BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46110.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937305 jgi|Araly1|937305|scaffold_501496.1 1103 0.0
> Ahg937305 jgi|Araly1|937305|scaffold_501496.1
Length=1041
Score = 1103 bits (597), Expect = 0.0
Identities = 816/914 (89%), Gaps = 45/914 (5%)
Strand=Plus/Plus
Query 162 AGACTCAAAACCCTCCAGGGAACGGATAGTCCCCGTCGTTTATTATCTCAGCCGGAATGG 221
|||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 95 AGACTCAAAACCCTCCAGCGAACAGAAAGTCCCCGTCGTTTATTATCTCAGCCGGAATGG 154
Query 222 CCGACTCGATCACCCACACTTCATTGAAGTACCTCTCTCTTCTCACAACGGTCTCTATCT 281
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CCAACTAGATCACCCACACTTCATTGAAGTACCTCTCTCTTCTCACAACGGTCTCTATCT 214
Query 282 CAAAGATGTAATCAATAGATTAAATGATCTACGAGGCAATGGAATGGCTTGTCTCTACTC 341
||||||||| |||||| | || ||||||||||||||||| |||||||||| |||||||||
Sbjct 215 CAAAGATGTGATCAATCGTTTGAATGATCTACGAGGCAAAGGAATGGCTTCTCTCTACTC 274
Query 342 TTGGTCCTCAAAACGAACTTACAAGAACGGTTTCGTCTGGTACGATTTATCAGATGAAGA 401
|||||| ||||||||| ||||||||||||| ||||| ||| ||||||||||||| |||||
Sbjct 275 TTGGTCTTCAAAACGAGCTTACAAGAACGGATTCGTATGGCACGATTTATCAGAGGAAGA 334
Query 402 TTTCATTTTTCCCGTTCATGGCCAAGAATATGTACTCAAAGGCTCTCAAATTCTCGACCT 461
||| |||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 335 TTTTATTTTTCCCGTTCATGGCCAAGAATACGTCCTCAAAGGCTCTCAAATTCTTGACCT 394
Query 462 TGATAATAACTCCGGT----AA--T---TTCTCCGCCGTCACTCACCGGCGTAACCAGTC 512
|||||||||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 395 TGATAATAACTCCGGTAAAGAATCTAACTTCTCCGCCGTCACTCACCGGCGTAACCAGTC 454
Query 513 TTGGAGCTCTGTTGATCATTACAAAGTCTACAAAGCGTCTGAGTTAAACGCTGAGGCAAC 572
|||||||||| ||| | | | | |||||||||||| | ||||| ||||
Sbjct 455 TTGGAGCTCTATTG---A-T-C--A--CTACAAAGCGTC---------CACTGAGTCAAC 496
Query 573 TCGTAAACTCTCGATGGATGCTTCGACACAGACTGATGATCGTCGCCGGAGGAAAAGT-C 631
|||||||||| ||| ||| ||||| |||||||||||||||||||| |||||||||| | |
Sbjct 497 TCGTAAACTCGCGACGGACGCTTCAACACAGACTGATGATCGTCGGCGGAGGAAAATTCC 556
Query 632 --C------GGTGGATGAAGTGAATGAGGTCACTGAGCTGAGTAGAGAAGAGATTACTTC 683
| ||||||||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct 557 GGCGAAAGAGGTGGATGAAGTGAATGAGATCACTGAGCTGAGTAAAGAAGAGGTTACTTC 616
Query 684 GCCTCCACAGTCAGATTCTAGCCCAGAAACCTTAGAATCATTGATGAGAGCAGATGGACG 743
|||||||||||||||||| || |||||||| || ||||||||||||| ||||||||||||
Sbjct 617 GCCTCCACAGTCAGATTCGAGTCCAGAAACATTGGAATCATTGATGAAAGCAGATGGACG 676
Query 744 GTTGATATTGCTTCAGGAAGATCAAGAATTGAATCGGACGGTTGAGAAGATGCGACCATC 803
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 677 GTTGATATTGCTTCCGGAAGATCAAGAATTGAATCGGACGGTTGAGAAGATGCGTCCGTC 736
Query 804 GGCTGTTCTGATGCAGCTGATATCGTGCGGTGCGATGTCGTTTAAGAAATGTGGTCCGAC 863
||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 737 GGCTGTTCTCATGCAGTTGATATCGTGTGGTGCGATGTCGTTTAAGAAATGTGGTCCGAC 796
Query 864 GCTAATGAATGGGAACACGAGAT-CTACGGCGG--TGCGAGGAACAGGGAATTATAGGCT 920
|||||||||| |||||||||| | || || || || || ||||||| |||||||||||
Sbjct 797 GCTAATGAATAGGAACACGAG-TAGTAGGGTGGAATG-GA-GAACAGGTAATTATAGGCT 853
Query 921 CGAGAGGGCAGAGAAGGAATTAAAGAGTTTTGGAAGGGTAAAATTGGAAGAGAAAGAGTA 980
||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 854 CGAAAGGGCAGAGAAGGAGTTAAGGAGTTTTGGAAGGGTAAAATTGGAAGAGAAAGAGTA 913
Query 981 TTTTAGTGGTAGCTTGATTGATGAGAGTAGTA--A-GAAGGAACTTGTTCCTGCTTTGAA 1037
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 914 TTTTAGTGGTAGCTTGATTGATGAGAGTAGTAGTAAGAAGGAACTTGTTCCTGCTTTGAA 973
Query 1038 GAGGTCATCTTCTT 1051
|||||| |||||||
Sbjct 974 GAGGTCTTCTTCTT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5