BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46130.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347705 jgi|Araly1|347705|fgenesh1_pg.C_scaffold_5001097 1208 0.0
> Ahg347705 jgi|Araly1|347705|fgenesh1_pg.C_scaffold_5001097
Length=777
Score = 1208 bits (654), Expect = 0.0
Identities = 735/774 (95%), Gaps = 6/774 (1%)
Strand=Plus/Plus
Query 1 ATGATGCAAGAGGAGGGAAACCGAAAAGGTCCATGGACAGAACAGGAAGACATACTTCTG 60
|||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 7 ATGATGCAAGAGGA--G-AACCGAAAAGGTCCATGGACAGAACAGGAGGACATACTTCTG 63
Query 61 GTAAATTTTGTTCACTTATTTGGAGATCGACGATGGGATTTTATAGCAAAAGTATCAGGT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 64 GTAAATTTTGTTCACTTATTTGGAGATCGACGATGGGATTTTATTGCAAAAGTATCAGGT 123
Query 121 TTGAACAGAACAGGAAAGAGTTGCAGGCTAAGATGGGTTAATTACCTACATCCTGGTCTC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 124 TTGAACAGAACAGGAAAGAGTTGCAGGCTAAGGTGGGTTAATTACCTACATCCCGGTCTC 183
Query 181 AAACGTGGCAAGATGACGCCTCAAGAAGAGCGCCTCGTCCTTGAGCTTCACGCTAAGTGG 240
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 184 AAACGCGGGAAGATGACGCCTCAAGAAGAGCGCCTCGTCCTTGAGCTTCACGCAAAGTGG 243
Query 241 GGAAACAGGTGGTCGAAAATAGCCCGAAAATTGCCGGGACGAACGGATAACGAGATAAAG 300
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 244 GGAAACAGGTGGTCGAAAATAGCCCGAAAATTACCGGGCCGAACGGATAACGAGATAAAG 303
Query 301 AACTACTGGAGGACTCATATGAGGAAGAAAGCTCAAGAAAAGAAGCGTCCTGTTTCCCCA 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 304 AATTACTGGAGGACTCATATGAGGAAGAAAGCTCAAGAAAAGAAGCGTCCTGTTTCGCCA 363
Query 361 ACTTCCTCATTTTCCAACTGCAGCTCGTCATCTGTGACCACTACCACCACCAATACTCAA 420
||||||||||||||| |||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 364 ACTTCCTCATTTTCCCACTGCAGCTCTTCATCTATGACCACTACAACCACCAATACTCAA 423
Query 421 GATACATCGTGCCACTCGCGTAAATCTTCAGGGGAAGTGAGCTTTTACGACACTGGAGGT 480
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 424 GATACATCGTGCCACTCGCGGAAATCTTCAGGGAAAGTGAGCTTTTACGACACTGGAGGA 483
Query 481 TCCCGATCCAC--TAGAGA-GATGAATCAAGAAAACGAAGACGTGTACTCGTTGGATGAT 537
||||||||||| |||| ||||| |||||||| ||||||| | ||||| ||||||||
Sbjct 484 TCCCGATCCACGGGGGAGATGATGAGTCAAGAAACCGAAGACATATACTCAATGGATGAT 543
Query 538 ATATGGAGAGAGATTGATCACTCAGCAGTAAACATAATAAAACCGGTTAAAGACATCTAC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 ATATGGAGAGAGATTGATCACTCAGCAGTAAACATAATAAAACCGGTTAAAGACATCTAC 603
Query 598 TCAGAACAAAGCCATTGCTTAAGTTACCCAAATCTAGCTTCACCATCATGGGAAAGCTCA 657
||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||
Sbjct 604 TCAGAACAAAGCCATTGCTTAAGTTACCCAACTCTGGCTTCTCCAACATGGGAAAGCTCA 663
Query 658 TTGGATTCTATATGGAACATGGATGCAGATAAAAGTAAGATATCGTCTTACTTTGCAAAT 717
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 664 TTGGATTCTATATGGAACATGGATGCAGATAAAAGTAAGATGTCGTCTTCCTTTGCAAAT 723
Query 718 GATCAGTTTCCTTTCTGTTTCCAACACAGTAGATCACCATGGTCGTCAGGTTAA 771
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 724 GATCAGTTTCCTTTCTGTTTCCAACACAGTAGATCACCATGGTCGCCAGGTTAA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5