BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46140.1
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937309 jgi|Araly1|937309|scaffold_501500.1 1162 0.0
> Ahg937309 jgi|Araly1|937309|scaffold_501500.1
Length=1226
Score = 1162 bits (629), Expect = 0.0
Identities = 829/926 (90%), Gaps = 11/926 (1%)
Strand=Plus/Plus
Query 210 GAAGAGTAGTAGTAGTCGCAGTGTTGAAGAGATAACCAAACAAGTATTCGACGGAGTAGT 269
|||||||| ||||||| | || ||| |||||||||||||| |||||||||| ||||||||
Sbjct 294 GAAGAGTAATAGTAGTAGAAGCGTTAAAGAGATAACCAAAGAAGTATTCGATGGAGTAGT 353
Query 270 CAGAAAGTCTTCATCTTGGATCAAGTCTGAGTTCCTTGGAAGAGGCTCTTACGGTTCGGT 329
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 354 GAGAAAGTCTTCTTCTTGGATCAAGTCTGAGTTCCTTGGAAGAGGCTCTTATGGTTCGGT 413
Query 330 TTATCTGGCGACAAGTAAGAAGGCCAAAACTAAAACGACCATGGCGATCAAATCTGCAGA 389
|||||| |||||||||||||| | |||| |||||| | ||||||||| |||||||||||
Sbjct 414 TTATCTAGCGACAAGTAAGAAAGACAAAGGTAAAACAATCATGGCGATAAAATCTGCAGA 473
Query 390 GATTTCACGAGCTTCGAGTCTAATGGACGAGGAAAGAATATTAACCCGTCTCTCATCTCC 449
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 474 GATTTCACGAGCTTCAAGTCTTATGGAGGAGGAAAGAATATTAACCCGTCTCTTATCTCC 533
Query 450 TTTCATTGTTCGTTGCTATGGCCACGAGATTGCACGTGAGGAGACTCTGTTCGGTGGCGA 509
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 534 TTTCGTTGTTCGTTGCTATGGCCACGAGATTGCACTTGAGGAGACTCTGTTCGGTGGATC 593
Query 510 GAGAACGAATTACAATTTGATTCTCGAGTATTGCTCTGGCAAAAGCCTCTTC-GACTTGG 568
||||||||| |||||||||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 594 GAGAACGAACTACAATTTGATTCTCGAGTATTGCTCCGGCAAAAGCCT-TGCCGACTTGA 652
Query 569 TCAACGA-TAACCTTGGAGGATTGTCAGAGAAAGATGTGAAACT-TCTTGCTAGAGATAT 626
|| | || |||| | |||||||| |||||||||||||||||| | | |||||||| ||||
Sbjct 653 TCGA-GAATAACATAGGAGGATTATCAGAGAAAGATGTGAAAATGT-TTGCTAGATATAT 710
Query 627 CCTTTACGGTCTCGACTGCATCCACAGGGCAAACATTATTCATTGTGACATTAAACCGGA 686
|||| |||||||| ||| |||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 711 CCTTAACGGTCTCAACTACATCCATAGGGAAAATATTATTCATTGTGACATTAAACCGGA 770
Query 687 AAATATCTT-CTTAACCCCTGTCGAGAACCGGATAAGACCTAGTGGGTATGTGGCAAAGA 745
||||||||| || | ||||||| ||||||||||||||||||| |||||||||| ||||||
Sbjct 771 AAATATCTTACT-ATCCCCTGTGGAGAACCGGATAAGACCTAATGGGTATGTGACAAAGA 829
Query 746 TTGGGGATTTCGGTTTAGCATTGGAGAAGGGTTCAAGCGAGTATGAAAAAGCATCAGGTC 805
|||| |||||||||||||||||||||||||| || |||||||||||||||||| | ||||
Sbjct 830 TTGGAGATTTCGGTTTAGCATTGGAGAAGGGGTCGAGCGAGTATGAAAAAGCACCGGGTC 889
Query 806 ATAGGAGAGGCACAACGCGATACATGTCTCCGGAGCTTATACGACATGGGATTGTTGATT 865
||| |||||||||||| ||||||||||||||||||||||||| || ||||| |||||||
Sbjct 890 ATACGAGAGGCACAACTAGATACATGTCTCCGGAGCTTATACGCCACGGGATAGTTGATT 949
Query 866 ACGCTGTTGACACGTGGGCTTTCGGATGCACAGTTTTGGAAATGTTAACGGGACAACAAG 925
|||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||| |||
Sbjct 950 ACGCTGTTGACATTTGGGCTTACGGATGCACGGTTTTGGAAATGTTTACGGGACAAGAAG 1009
Query 926 TATGGGGAGAACATAGTGATCTCGGTTCTGTAGATTGGGACATTCTCATCGGTCAAAGCT 985
||||||||||||| |||||| | ||| ||||||||||||||| ||||||||||| ||||
Sbjct 1010 TATGGGGAGAACACAGTGATTTGGGTCCTGTAGATTGGGACAGTCTCATCGGTCTAAGCA 1069
Query 986 GTTACATTCCTTATATACCGGATTGGTTATCTGAAGAAGCACA-GCATTTTCTCAGCAGA 1044
||| ||||||||||||||||||||||||||||||||||||||| | ||||||| || |
Sbjct 1070 GTTTCATTCCTTATATACCGGATTGGTTATCTGAAGAAGCACAAG-ATTTTCTGAGTTGT 1128
Query 1045 TGTTTAAAAAGGGACCCTGCTTCAAGGTGGGGGATTGGTGCACTCTTGAACCACCCCTTT 1104
||||| ||||| | || ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1129 TGTTTGGTTAGGGATCATGGTTCAAGGTGGGGGATTGGTGCACTCATGAACCATCCCTTT 1188
Query 1105 TTGCAATGTGGATCTATAATTGTTTA 1130
| ||||||||||| ||||||||||||
Sbjct 1189 T-GCAATGTGGATGTATAATTGTTTA 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42163946202
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5