BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46160.1 Length=1182 Score E Sequences producing significant alignments: (Bits) Value Ahg897428 jgi|Araly1|897428|Al_scaffold_0005_1394 556 1e-157 Ahg897427 jgi|Araly1|897427|Al_scaffold_0005_1393 279 2e-74 > Ahg897428 jgi|Araly1|897428|Al_scaffold_0005_1394 Length=1071 Score = 556 bits (301), Expect = 1e-157 Identities = 816/1050 (78%), Gaps = 93/1050 (9%) Strand=Plus/Plus Query 16 TCTTCTGATCGATTAGTTC-A-GTG-GGACGACGACTCTAACCGTCCTCACAAGAAGTTG 72 |||||||||||||||| || | | | ||||||| |||| |||||||||||||||||||| Sbjct 16 TCTTCTGATCGATTAGGTCAATGGGAGGACGACAACTCGAACCGTCCTCACAAGAAGTTT 75 Query 73 AAGCATTCAAC-AACGATTTCAGAGACGAGTGTGATAGAGGATGATGCTGATTCGTCTAC 131 ||| |||| || ||| | |||||||||| |||||||| |||||||| ||||| | | Sbjct 76 AAGTATTC-ACGAACCAGATCAGAGACGAACGTGATAGACGATGATGCAGATTC-T-T-- 130 Query 132 CCAGATGGGCCATTCGATCAAAACCATTCCAAAAAGCGA-TCGGTGGGTCGTAACTCGTT 190 | || || ||| |||| || | ||| |||| || || |||||| || ||||||| Sbjct 131 -C-GA---ACCGTTCAATCACAAGAAAGCCAGAAAGTGATTC-GTGGGTGGTGACTCGTT 184 Query 191 ATCTTGGAAA---CTCT---TCACGCAGTTCTGTTTACTTAGCCGAGAGCACGATCGAAG 244 |||||||||| |||| ||| | | ||||||||| |||||| || || | ||| | Sbjct 185 ATCTTGGAAACGTCTCTGGCTCATACGGCTCTGTTTACGTAGCCGTCAGAACAACCGACG 244 Query 245 GAGAGGAAGACTATCTTCCTGACGAGATGACCATTAAATCTATTGAGATCTCACAAGC-G 303 |||| |||||| |||||||| |||||||| ||| ||||||| | || ||||| |||| | Sbjct 245 GAGACGAAGACGATCTTCCTTACGAGATGGTCATCAAATCTAGTCAGCTCTCAGAAGCAG 304 Query 304 TCACGTCTTATGAACGAAGAAAAGTTTC-TATCCCGTCTCCAAAA-CCCTTTTGTTGTGT 361 || |||||||||||| ||||| || | || | ||||| ||||| ||| ||| | || | Sbjct 305 -CATATCTTATGAACGAGGAAAA-TTACTTAACACGTCT-CAAAAGCCCGTTTATCGTCT 361 Query 362 -CTTTCTACGGCCACGAGGTCACTATAGAGAAGGACGGGAAGGATCCATTACTCGAGAAG 420 || | |||||||| || | | | | || |||| ||| || | | | ||||| Sbjct 362 CCTGT-TACGGCCATGA-G--A-T-GACAG-AGGA---GAA-GAACGA-GA----AGAAG 405 Query 421 ATGTA-TTACAACACGT-TACAAGAGTACAGCT-CAGGAAGAAA-CCTAGCGACACACAT 476 | ||| || |||||| | | || |||||| | | | || ||| ||| |||| |||| Sbjct 406 AAGTACTT-CAACAC-TATTCACGAGTACTG-TCCTGG-TCAAAGCCTTGCGAAACAC-G 460 Query 477 TGaaaaaaaCA-G-AGGAAAATTACCGGAAGATGATGTGAGGAGTCT-CGCTAATGAGAT 533 | |||| ||| | |||| |||||| | | |||||||| ||| | ||||| ||| || Sbjct 461 T-CAAAAGACATGAAGGAGGATTACCAGTTGTTGATGTGAAGAG-ATACGCTAGTGATAT 518 Query 534 ATTGCTTGGTCTCAAGTATATTCATGAAGA-GAAGATCATTCATTGTGACATCAAACCAA 592 ||| |||||||||||| ||| |||||||| | ||||||||||| | ||||||||||||| Sbjct 519 CTTGTTTGGTCTCAAGTGTATACATGAAGATG-AGATCATTCATCGCGACATCAAACCAA 577 Query 593 AGAATATCA-TACTTC-CG-TTTGAGAATAACCTATTT---GCTCAGATCGCTGGTTTTG 646 | || || | ||| || || | | | | ||| ||| ||||| ||||| ||| Sbjct 578 AAAACAT-ATTAC-TCACGCCTAGCG-GTTGTGGGTTTAAGGCTAAGATCTCTGGTCTTG 634 Query 647 GAAAAGCGATAAAGAAATGGTCGG-TTGAGTATGGT-GAAGGATTAGG--TCATAGGA-T 701 |||| ||||| ||||||||| || ||||| ||||| ||| | | || |||||||| | Sbjct 635 GAAACGCGATTGAGAAATGGT-GGATTGAGGATGGTGGAA-G-CT-GGAATCATAGGAGT 690 Query 702 AGGCACGT-C-ACGATTATTGCCCCCGGAGGTTATGATGG-ACATGGTTTTGGATTATGG 758 ||||| | | | | ||| || | |||||| |||| | || | ||||||||||||||||| Sbjct 691 -GGCAC-TGCAAGGTTTA-TGTCACCGGAGCTTAT-AAGGAATATGGTTTTGGATTATGG 746 Query 759 TGCTGATGTGTGGGCTTTTGGCTGTACCGTGCTTGAGATGTTGACTGGAGAAAGAGTTTG 818 ||| ||||||||||||||||| |||||||||||||||||||||||||||||| || ||| Sbjct 747 TGCGGATGTGTGGGCTTTTGGGTGTACCGTGCTTGAGATGTTGACTGGAGAACGATTTTT 806 Query 819 GAGTGAGTTTGGTAAGCTTGATTGGGAAGGCTGG-AAGACCCTCATTGGTGAAAGTGGTA 877 |||||||||||||||||||||||||||||| ||| || || ||||||||| ||||||| | Sbjct 807 GAGTGAGTTTGGTAAGCTTGATTGGGAAGGTTGGGAA-ACTCTCATTGGTAAAAGTGGAA 865 Query 878 GCGTTCCCTATATTCCTAATTACTTGTCTGATAAGGCAAAGGATTTTCTTGCAAAGTGTT 937 ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 866 TTGTTCCCTATATCCCTGATTACTTGTCTGATAAGGCAAAGGATTTTCTCACAAAGTGTT 925 Query 938 TGGAGAGAGATCCATCTAAGAGGTGGTCAGTTGATAGTTTGCTCGAACATGAGTTCCTTA 997 |||||||||| |||||||| |||||||| |||||||||||| || ||||||||||| || Sbjct 926 TGGAGAGAGACCCATCTAAAAGGTGGTCTGTTGATAGTTTGATCAAACATGAGTTC-TTG 984 Query 998 AATGGATTGACgaagacg-aagaagaagaa 1026 |||| | || |||| || ||||||||||| Sbjct 985 AATG-AC-GAAGAAG-CGGAAGAAGAAGAA 1011 > Ahg897427 jgi|Araly1|897427|Al_scaffold_0005_1393 Length=249 Score = 279 bits (151), Expect = 2e-74 Identities = 185/202 (92%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 388 GAGAAGGACGGGAAGGATCCATTACTCGAGAAGATGTATTACAACACGTTACAAGAGTAC 447 |||||||||| |||| |||| |||||||||||||| || |||||||||||||| |||||| Sbjct 34 GAGAAGGACGAGAAGAATCCTTTACTCGAGAAGATTTACTACAACACGTTACACGAGTAC 93 Query 448 AGCTCAGGAAGAAACCTAGCGACACACATTGaaaaaaaCAGAGGAAAATTACCGGAAGAT 507 | ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 94 TGTTCAGGAAGAAACCTAGCGAAACACATTGAAAGAAACAGAGGAAAATTACCGGAAGAT 153 Query 508 GATGTGAGGAGTCTCGCTAATGAGATATTGCTTGGTCTCAAGTATATTCATGAAGAGAAG 567 ||||||| |||| |||||| |||||||||| |||||||||||||| |||||||||||||| Sbjct 154 GATGTGAAGAGTTTCGCTAGTGAGATATTGGTTGGTCTCAAGTATCTTCATGAAGAGAAG 213 Query 568 ATCATTCATTGTGACATCAAAC 589 |||||||| ||||| ||||||| Sbjct 214 ATCATTCACTGTGATATCAAAC 235 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44108214969 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5