BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46160.1
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897428 jgi|Araly1|897428|Al_scaffold_0005_1394 556 1e-157
Ahg897427 jgi|Araly1|897427|Al_scaffold_0005_1393 279 2e-74
> Ahg897428 jgi|Araly1|897428|Al_scaffold_0005_1394
Length=1071
Score = 556 bits (301), Expect = 1e-157
Identities = 816/1050 (78%), Gaps = 93/1050 (9%)
Strand=Plus/Plus
Query 16 TCTTCTGATCGATTAGTTC-A-GTG-GGACGACGACTCTAACCGTCCTCACAAGAAGTTG 72
|||||||||||||||| || | | | ||||||| |||| ||||||||||||||||||||
Sbjct 16 TCTTCTGATCGATTAGGTCAATGGGAGGACGACAACTCGAACCGTCCTCACAAGAAGTTT 75
Query 73 AAGCATTCAAC-AACGATTTCAGAGACGAGTGTGATAGAGGATGATGCTGATTCGTCTAC 131
||| |||| || ||| | |||||||||| |||||||| |||||||| ||||| | |
Sbjct 76 AAGTATTC-ACGAACCAGATCAGAGACGAACGTGATAGACGATGATGCAGATTC-T-T-- 130
Query 132 CCAGATGGGCCATTCGATCAAAACCATTCCAAAAAGCGA-TCGGTGGGTCGTAACTCGTT 190
| || || ||| |||| || | ||| |||| || || |||||| || |||||||
Sbjct 131 -C-GA---ACCGTTCAATCACAAGAAAGCCAGAAAGTGATTC-GTGGGTGGTGACTCGTT 184
Query 191 ATCTTGGAAA---CTCT---TCACGCAGTTCTGTTTACTTAGCCGAGAGCACGATCGAAG 244
|||||||||| |||| ||| | | ||||||||| |||||| || || | ||| |
Sbjct 185 ATCTTGGAAACGTCTCTGGCTCATACGGCTCTGTTTACGTAGCCGTCAGAACAACCGACG 244
Query 245 GAGAGGAAGACTATCTTCCTGACGAGATGACCATTAAATCTATTGAGATCTCACAAGC-G 303
|||| |||||| |||||||| |||||||| ||| ||||||| | || ||||| |||| |
Sbjct 245 GAGACGAAGACGATCTTCCTTACGAGATGGTCATCAAATCTAGTCAGCTCTCAGAAGCAG 304
Query 304 TCACGTCTTATGAACGAAGAAAAGTTTC-TATCCCGTCTCCAAAA-CCCTTTTGTTGTGT 361
|| |||||||||||| ||||| || | || | ||||| ||||| ||| ||| | || |
Sbjct 305 -CATATCTTATGAACGAGGAAAA-TTACTTAACACGTCT-CAAAAGCCCGTTTATCGTCT 361
Query 362 -CTTTCTACGGCCACGAGGTCACTATAGAGAAGGACGGGAAGGATCCATTACTCGAGAAG 420
|| | |||||||| || | | | | || |||| ||| || | | | |||||
Sbjct 362 CCTGT-TACGGCCATGA-G--A-T-GACAG-AGGA---GAA-GAACGA-GA----AGAAG 405
Query 421 ATGTA-TTACAACACGT-TACAAGAGTACAGCT-CAGGAAGAAA-CCTAGCGACACACAT 476
| ||| || |||||| | | || |||||| | | | || ||| ||| |||| ||||
Sbjct 406 AAGTACTT-CAACAC-TATTCACGAGTACTG-TCCTGG-TCAAAGCCTTGCGAAACAC-G 460
Query 477 TGaaaaaaaCA-G-AGGAAAATTACCGGAAGATGATGTGAGGAGTCT-CGCTAATGAGAT 533
| |||| ||| | |||| |||||| | | |||||||| ||| | ||||| ||| ||
Sbjct 461 T-CAAAAGACATGAAGGAGGATTACCAGTTGTTGATGTGAAGAG-ATACGCTAGTGATAT 518
Query 534 ATTGCTTGGTCTCAAGTATATTCATGAAGA-GAAGATCATTCATTGTGACATCAAACCAA 592
||| |||||||||||| ||| |||||||| | ||||||||||| | |||||||||||||
Sbjct 519 CTTGTTTGGTCTCAAGTGTATACATGAAGATG-AGATCATTCATCGCGACATCAAACCAA 577
Query 593 AGAATATCA-TACTTC-CG-TTTGAGAATAACCTATTT---GCTCAGATCGCTGGTTTTG 646
| || || | ||| || || | | | | ||| ||| ||||| ||||| |||
Sbjct 578 AAAACAT-ATTAC-TCACGCCTAGCG-GTTGTGGGTTTAAGGCTAAGATCTCTGGTCTTG 634
Query 647 GAAAAGCGATAAAGAAATGGTCGG-TTGAGTATGGT-GAAGGATTAGG--TCATAGGA-T 701
|||| ||||| ||||||||| || ||||| ||||| ||| | | || |||||||| |
Sbjct 635 GAAACGCGATTGAGAAATGGT-GGATTGAGGATGGTGGAA-G-CT-GGAATCATAGGAGT 690
Query 702 AGGCACGT-C-ACGATTATTGCCCCCGGAGGTTATGATGG-ACATGGTTTTGGATTATGG 758
||||| | | | | ||| || | |||||| |||| | || | |||||||||||||||||
Sbjct 691 -GGCAC-TGCAAGGTTTA-TGTCACCGGAGCTTAT-AAGGAATATGGTTTTGGATTATGG 746
Query 759 TGCTGATGTGTGGGCTTTTGGCTGTACCGTGCTTGAGATGTTGACTGGAGAAAGAGTTTG 818
||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct 747 TGCGGATGTGTGGGCTTTTGGGTGTACCGTGCTTGAGATGTTGACTGGAGAACGATTTTT 806
Query 819 GAGTGAGTTTGGTAAGCTTGATTGGGAAGGCTGG-AAGACCCTCATTGGTGAAAGTGGTA 877
|||||||||||||||||||||||||||||| ||| || || ||||||||| ||||||| |
Sbjct 807 GAGTGAGTTTGGTAAGCTTGATTGGGAAGGTTGGGAA-ACTCTCATTGGTAAAAGTGGAA 865
Query 878 GCGTTCCCTATATTCCTAATTACTTGTCTGATAAGGCAAAGGATTTTCTTGCAAAGTGTT 937
||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 866 TTGTTCCCTATATCCCTGATTACTTGTCTGATAAGGCAAAGGATTTTCTCACAAAGTGTT 925
Query 938 TGGAGAGAGATCCATCTAAGAGGTGGTCAGTTGATAGTTTGCTCGAACATGAGTTCCTTA 997
|||||||||| |||||||| |||||||| |||||||||||| || ||||||||||| ||
Sbjct 926 TGGAGAGAGACCCATCTAAAAGGTGGTCTGTTGATAGTTTGATCAAACATGAGTTC-TTG 984
Query 998 AATGGATTGACgaagacg-aagaagaagaa 1026
|||| | || |||| || |||||||||||
Sbjct 985 AATG-AC-GAAGAAG-CGGAAGAAGAAGAA 1011
> Ahg897427 jgi|Araly1|897427|Al_scaffold_0005_1393
Length=249
Score = 279 bits (151), Expect = 2e-74
Identities = 185/202 (92%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 388 GAGAAGGACGGGAAGGATCCATTACTCGAGAAGATGTATTACAACACGTTACAAGAGTAC 447
|||||||||| |||| |||| |||||||||||||| || |||||||||||||| ||||||
Sbjct 34 GAGAAGGACGAGAAGAATCCTTTACTCGAGAAGATTTACTACAACACGTTACACGAGTAC 93
Query 448 AGCTCAGGAAGAAACCTAGCGACACACATTGaaaaaaaCAGAGGAAAATTACCGGAAGAT 507
| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 94 TGTTCAGGAAGAAACCTAGCGAAACACATTGAAAGAAACAGAGGAAAATTACCGGAAGAT 153
Query 508 GATGTGAGGAGTCTCGCTAATGAGATATTGCTTGGTCTCAAGTATATTCATGAAGAGAAG 567
||||||| |||| |||||| |||||||||| |||||||||||||| ||||||||||||||
Sbjct 154 GATGTGAAGAGTTTCGCTAGTGAGATATTGGTTGGTCTCAAGTATCTTCATGAAGAGAAG 213
Query 568 ATCATTCATTGTGACATCAAAC 589
|||||||| ||||| |||||||
Sbjct 214 ATCATTCACTGTGATATCAAAC 235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5