BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46180.1
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937311 jgi|Araly1|937311|scaffold_501502.1 1790 0.0
Ahg332244 jgi|Araly1|332244|fgenesh1_pm.C_scaffold_8001587 1053 0.0
> Ahg937311 jgi|Araly1|937311|scaffold_501502.1
Length=1084
Score = 1790 bits (969), Expect = 0.0
Identities = 1046/1084 (96%), Gaps = 1/1084 (0%)
Strand=Plus/Plus
Query 15 GGATCGTTAATGGAGAA-AAATGGCTGAGCCAGATTCTGTAAACGAAGCCAAGGAGAAGA 73
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGATCGTTAATGGAGAAGAAATGGCTGAGCCAGATTCTGTAAACGAAGCCAAGGAGAAGA 60
Query 74 AGAAGAAGCTATGGAAAGCTGTTTTCGCAATCTCTGGGATCATGCTCACTCTCGTCATCT 133
|||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 61 AGAAGAAGCTATGGAAAGCTGTTTTCGCTATCTCTGGGATCATGATTACTCTCGTCATCT 120
Query 134 ATGGTCTTCTTCAGGAAAAGATCATGAGAGTACCTTATGGATTGAAAAAAGAGTACTTTA 193
| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 121 ACGGTCTTCTTCAGGAGAAGATTATGAGAGTGCCTTATGGATTGAAAAAAGAGTACTTTA 180
Query 194 AGCACTCTTTGTTTCTTGTTTTCTGTAATCGTCTCACTACATCAGCTGTTTCTGCTGCTG 253
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 AGCACTCTTTGTTTCTTGTTTTCTGTAATCGTCTTACTACATCAGCTGTTTCTGCTGCTG 240
Query 254 CTTTACTGGCAAGCAAGAAAGTTTTGGATCCTGTAGCTCCGGTTTATAAGTATTGTCTTA 313
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 CTTTACTGGGAAGCAAGAAAGTTTTGGATCCTGTAGCTCCGGTTTATAAGTATTGTCTCA 300
Query 314 TATCAGTAACTAACATCTTAACCACAACATGCCAATATGAGGCCCTCAAGTATGTGAGTT 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATCAGTAACTAACATCTTAACCACAACATGCCAATATGAGGCCCTCAAGTATGTGAGTT 360
Query 374 TCCCAGTCCAAACTTTGGCTAAATGTGCCAAGATGATACCTGTAATGGTTTGGGGAACTC 433
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TCCCAGTCCAAACGTTGGCTAAATGTGCCAAAATGATACCTGTAATGGTTTGGGGAACTC 420
Query 434 TCATTATGCAGAAAAAGTATAGGGGATTTGATTATCTAGTGGCCTTTCTCGTGACTCTTG 493
|||| |||||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 421 TCATCATGCAGAAAAGGTATAGGGGGTTTGATTATTTAGTGGCGTTTCTCGTGACTCTTG 480
Query 494 GCTGCTCTGTGTTTATTCTTTTTCCGGCGGGAGATGATATTAGTCCGTACAACAAGGGAA 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTGCTCTGTGTTTATTCTTTTTCCGGCGGGAGATGATATTAGTCCGTACAACAAGGGAA 540
Query 554 GAGAAAATACTGTGTGGGGTGTATCCCTTATGGTTGGTTATCTTGGGTTTGATGGTTTTA 613
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGAAAATACTGTCTGGGGTGTATCCCTTATGGTTGGTTATCTTGGGTTTGATGGTTTTA 600
Query 614 CAAGCACATTCCAAGACAAACTTTTTAAAGGTTATAATATGGAAATACATAACCAGATAT 673
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 601 CAAGCACATTCCAAGACAAACTCTTTAAAGGTTATAATATGGAAATACATAACCAGATAT 660
Query 674 TCTACACAACAATTTGTTCCTCTATTCTTAGTTTTACTGGCCTTATATTGCAAGGACATT 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTACACAACAATTTGTTCCTCTATTCTTAGTTTTACTGGCCTTATATTGCAAGGACATT 720
Query 734 TACTCCCAGCAGTAGACTTTGTTTCTCGACATAGGGATTGCCTATTTGACATAGCTTTGC 793
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 721 TACTCCCAGCAGTAGACTTTGTTTCTCGACATAGGGATTGTCTATTTGACATCGCTTTGC 780
Query 794 TTTCCACTGTAGCAACAGCCAGCCAATTTTTCATTTCCTACACCATTAGGACATTTGGTG 853
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 781 TTTCCACTGTAGCAACAGCCAGCCAATTTTTCATTTCGTACACCATTAGGACATTTGGTG 840
Query 854 CTCTAACGTTTGCTGCCATAATGACTACAAGGCAGCTTGCCAGCATCATGCTCTCCTGCA 913
||||||||||||||||||| ||||| ||||| ||||||| ||||| |||||||||||||
Sbjct 841 CTCTAACGTTTGCTGCCATTATGACAACAAGACAGCTTGTGAGCATTATGCTCTCCTGCA 900
Query 914 TTTGGTTCTCACACCCGCTTAGCTGGGAGCAGTGTATTGGATCCGTAATTGTTTTCGGAT 973
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 TTTGGTTCTCTCACCCGCTTAGCTGGGAGCAGTGTATTGGATCCGTAATTGTTTTCGGGT 960
Query 974 CTCTATATGCTAAAACCTTCGTGAAGAAGAAATCAGAAAAGCCGCCGGCAGCTCAAGAAC 1033
||||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||||||
Sbjct 961 CTCTATATGCTAAAACCTTAGTGAAGAAGAGATCAGAAAATCCGCAGGCAGCTCAAGAAC 1020
Query 1034 TTCCACGGGATGAAGAGGCGCAGCCTCTGAAGGGAAACCCTTAAAGCACAGAGAGAGCTT 1093
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1021 TTCCACCGGATGAAGAGGCTCAGCCTCTGAAGGGAAACCCTTAAAGCACAGAGAGAGCCT 1080
Query 1094 TATC 1097
||||
Sbjct 1081 TATC 1084
> Ahg332244 jgi|Araly1|332244|fgenesh1_pm.C_scaffold_8001587
Length=1035
Score = 1053 bits (570), Expect = 0.0
Identities = 836/965 (87%), Gaps = 15/965 (2%)
Strand=Plus/Plus
Query 34 ATGGCTGAGCCAGATTCTGTAAACGAAGCCAAG-GAGAAGAAGAAGAAGCTATGGAAAGC 92
||||||||||| || | ||||||| || || || ||| |||| || |||||||||
Sbjct 1 ATGGCTGAGCCGGAAACAGTAAACGGAG--GAGTGA-AAG-AGAACAAATTATGGAAAGG 56
Query 93 TGTTTTCGCAATCTCTGGGATCATGCTC-ACTCTCGTCATCTATGGTCTTCTTCAGGAAA 151
|| |||||| | || || || ||| || ||||| || ||||||||| |||||||||| |
Sbjct 57 AGTATTCGCAGTTTCCGGCATTATG-TCTACTCTTGTAATCTATGGTGTTCTTCAGGAGA 115
Query 152 AGATCATGAGAGTACCTTATGGATTGAAAAAAGAGTACTTTAAGCACTCTTTGTTTCTTG 211
|||| |||||||| ||||||||| |||| ||||| || ||||| ||||||||||||||||
Sbjct 116 AGATAATGAGAGTTCCTTATGGAGTGAACAAAGATTATTTTAAACACTCTTTGTTTCTTG 175
Query 212 TTTTCTGTAATCGTCTCACTACATCAGCTGTTTCTGCTGCTGCTTTACTGGCAAGCAAGA 271
||||||| ||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||
Sbjct 176 TTTTCTGCAATCGGCTCACTACATCAGCTGTCTCTGCTGGTGCTTTATTGGCAAGCAAGA 235
Query 272 AAGTTTTGGATCCTGTAGCTCCGGTTTATAAGTATTGTCTTATATCAGTAACTAACATCT 331
||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 236 AAGTTTTGGATCCTGTAGCTCCGGTTTATAAATATTGCCTTATATCAGTGACTAACATCT 295
Query 332 TAACCACAACATGCCAATATGAGGCCCTCAAGTATGTGAGTTTCCCAGTCCAAACT-TTG 390
||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| |||
Sbjct 296 TAACCACAACATGCCAATACGAGGCTCTCAAGTATGTGAGCTTCCCTGTCCAAACTCTTG 355
Query 391 GCTAAATGTGCCAAGATGATACCTGTAATGGTTTGGGGAACTCTCATTATGCAGAAAAAG 450
| |||||||| || |||||||| |||||||| |||||||| |||||||||||||| |||
Sbjct 356 -CAAAATGTGCTAAAATGATACCAGTAATGGTGTGGGGAACGCTCATTATGCAGAAGAAG 414
Query 451 TATAGGGGATTTGATTATCTAGTGGCCTTTCTCGTGACTCTTGGCTGCTCTGTGTTTATT 510
|||| ||||||||| ||| ||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 415 TATAAGGGATTTGACTATTTAGTGGCTTTTCTGGTGACCCTTGGCTGCTCTGTCTTTATT 474
Query 511 CTTTTTCCGGCGGGAGATGATATTAGTCCGTACAACAAGGGAAGAGAAAATACTGTGTGG 570
||||||||||| ||||||||| ||||||||||||| |||||||| ||||||||||| |||
Sbjct 475 CTTTTTCCGGCAGGAGATGATGTTAGTCCGTACAATAAGGGAAGGGAAAATACTGTTTGG 534
Query 571 GGTGTATCCCTTATGGTTGGTTATCTTGGGTTTGATGGTTTTACAAGCACATTCCAAGAC 630
||||| |||||||||| ||||||||| |||||||| || |||||||||||||||||||||
Sbjct 535 GGTGTTTCCCTTATGGCTGGTTATCTGGGGTTTGACGGCTTTACAAGCACATTCCAAGAC 594
Query 631 AAACTTTTTAAAGGTTATAATATGGAAATACATAACCAGATATTCTACACAACAATTTGT 690
|| || |||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 595 AAGCTCTTTAAAGGATATAATATGGAGATACATAACCAAATATTCTACACAACACTTTGT 654
Query 691 TCCTCTATTCTT-AGTTTTACTGGCCTTATATTGCAAGGACATTTACTCCCAGC-AGTAG 748
|| | | || || ||||| || || |||||||||||||| |||||||| ||||| | |||
Sbjct 655 TCTTGTGTT-TTGAGTTTCACAGGACTTATATTGCAAGGGCATTTACTACCAGCTA-TAG 712
Query 749 ACTTTGTTTCTC-GACATAGGGATTGCCTATTTGACATAGCTTTGCTTTCCACTGTAGCA 807
| |||||||||| | ||||||||||| || | ||||| ||| ||||||| || || |||
Sbjct 713 ATTTTGTTTCTCTG-CATAGGGATTGTTTACTCGACATCGCTCTGCTTTCTACGGTTGCA 771
Query 808 ACAGCCAGCCAATTTTTCATTTCCTACACCATTAGGACATTTGGTGCTCTAACGTTTGCT 867
||||| ||||| || |||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 772 ACAGCAAGCCAGTTCTTCATTTCGTACACAATTAGGACATTTGGTGCTCTAACATTTGCT 831
Query 868 GCCATAATGACTACAAGGCAGCTTGCCAGCATCATGCTCTCCTGCATTTGGTTCTCACAC 927
|| || ||||| || || |||||||| |||||||||||||| ||||||||||| || ||
Sbjct 832 GCAATCATGACGACCAGACAGCTTGCAAGCATCATGCTCTCATGCATTTGGTTTTCTCAT 891
Query 928 CCGCTTAGCTGGGAGCAGTGTATTGGATCCGTAATTGTTTTCGGATCTCTATATGCTAAA 987
|| |||||||||||||| ||||| ||||| || || |||||||||||| |||| || |||
Sbjct 892 CCTCTTAGCTGGGAGCAATGTATCGGATCGGTCATCGTTTTCGGATCTTTATACGCGAAA 951
Query 988 ACCTT 992
| |||
Sbjct 952 AACTT 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51770921286
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5