BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46190.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937315 jgi|Araly1|937315|scaffold_501506.1 1194 0.0
Ahg937312 jgi|Araly1|937312|scaffold_501503.1 363 2e-99
> Ahg937315 jgi|Araly1|937315|scaffold_501506.1
Length=919
Score = 1194 bits (646), Expect = 0.0
Identities = 819/896 (91%), Gaps = 37/896 (4%)
Strand=Plus/Plus
Query 1 ATGTCTAAATACGAATTAAAAGTAACTTCTAAAGGGTCACAAAAACACGAGAAGCT-CAA 59
|||||||| |||||||||||| ||||||||||||| | ||| ||||||||||||| |||
Sbjct 21 ATGTCTAACTACGAATTAAAAATAACTTCTAAAGGATGTCAACAACACGAGAAGCTCCAA 80
Query 60 -GACCGCTCTT-CTAC-CA-TATT-GGAGAGAACGTCCTCCAACAACTTACAGCGTCACG 114
| | || || | || || | || ||||||||||||||||||||||||||||||||||
Sbjct 81 TTA-C-CT-TTACCACTCATTTTTATGAGAGAACGTCCTCCAACAACTTACAGCGTCACG 137
Query 115 TTCGAGTCTTTTGGGAAAATGATGGAGCTAGTAAACAATGGATATTACGAGTCCCTTCCT 174
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 138 TTCGAGTCTTTTGGGAAAATGATGGAGCTAGTCAACAATGGATATTACGAGTCCCTTCCT 197
Query 175 TTCACTGTCGATGGAATCAACTGGACGTTCAAAATCTACCCTAACGGAAACTCGGACACC 234
|||||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 198 TTCACTGTTGATGGATTCAATTGGACGTTCAAAATCTACCCAAACGGAAACTCGGACACT 257
Query 235 ACAAGAGGACTTATTTATCT-TTATGTAAAAATTGATGACTCAAGCATCACCGACCCACC 293
|||||||||||| | ||| | |||||||| ||||||| |||||||| |||||||||||||
Sbjct 258 ACAAGAGGACTTGTCTAT-TGTTATGTAAGAATTGATAACTCAAGCCTCACCGACCCACC 316
Query 294 ATTAGATGTGTATGCGGAGATCAAGTTCTTCGTC-TACAACTATGGCATTAGCGAGTATT 352
|||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||||||
Sbjct 317 ATTAGATGTGTATGCGGAGATCAAGTTCTTCG-CATACAACTATGGCCTTAGCCAGTATT 375
Query 353 ATACATACCAAGAAGTCGAGCCGGTAAAGTTTGATAGTGTACAACAGGAGTGGGGAAGGT 412
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 376 ATACATACCAAGAAGTCGAGCCGGTAAAGTTTGATAGTGTAGAACAGGAGTGGGGAAAGT 435
Query 413 GGATTG----A--T--G-T--CTTCGTTGCTCAACGCAACAAATCAGAAGTTTTCTCCTA 461
|||||| | | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 436 GGATTGTTCTAACTACGATGTCTTCGTTGCTCAACGCAACAAATCAGAAGTTTTCTCCTA 495
Query 462 TGATGAAAACATAAGCAACCCTGTTTTCACTTGGAGCCTCCCCAATTTCTCTACCCTCAC 521
||||||||||| |||| ||| ||||||||||||| |||| ||||||||||||| |||||
Sbjct 496 CGATGAAAACATCAGCAGCCCCGTTTTCACTTGGAACCTCACCAATTTCTCTACACTCAC 555
Query 522 TCTCGACTCTTACACATCCGACCCGTTTTCTTCTGGAGACAGAAACTGGGTTTTGAAAGT 581
||| |||||||||||||||||||||||||||||||||||||| ||||| ||| | |
Sbjct 556 TCTGGACTCTTACACATCCGACCCGTTTTCTTCTGGAGACAGGAACTG--TTT--A---T 608
Query 582 ATATCCAAATGGAGATGGTGTTGGAAAGGATAATTCTTTGTCACTCTACTTGTTGAGTGA 641
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 609 ----CCAAATGGAGATGGTGTTGGAACGGATAATTCTTTGTCACTCTACTTGTTGAGTGA 664
Query 642 GTCTAATGAAAAGAATTACGTTCGAGCCACACTACGAGTTCTAAACCAAATCGGATCCGA 701
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 665 GTCTAATGAAAAGAATTACGTTCGAGCCACACTAAGAGTTCTAAACCAAATCGGATCCGA 724
Query 702 CAATGTGGAGAAGCCAGTTGAGGGATGGCCTAATGCAGCAGAAAATGGATGGGGTTAC-C 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 725 TAATGTGGAGAAGCCAGTTGAGGGATGGCCTAATGCAGCAGAAAATGGATGGGGTTACGC 784
Query 761 AGGAGTTTATACCTCTCGCAGATCTTCAAGATGCAACCAAAGGTTTTGTTGTGGACGATT 820
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 785 -GGAGTTTATACCTCTTGCAGATCTTCAAGATTCAACCAAAGGTTTTGTTGTGGACGATG 843
Query 821 TGCTTGAAGTTGAAGTTGAGATCATGGCCATCTCTAAACAAACTCCAATTAATTAG 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TGCTTGAAGTTGAAGTTGAGATCATGGCCATCTCTAAACAAACTCCAATTAATTAG 899
> Ahg937312 jgi|Araly1|937312|scaffold_501503.1
Length=371
Score = 363 bits (196), Expect = 2e-99
Identities = 236/255 (93%), Gaps = 4/255 (2%)
Strand=Plus/Plus
Query 113 CGTTCGAGTCTTTTGGGAAAATGATGGAGCTAGTAAACAATGGATATTACGAGTCCCTTC 172
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CGTTCGAGTCTTTTGGGAAAATGATGGAGCTAGTCAACAATGGATATTACGAGTCCCTTC 60
Query 173 CTTTCACTGTCGATGGAATCAACTGGACGTTCAAAATCTACCCTAACGGAAACTCGGACA 232
||||||||||||||||| |||| |||||||||||||||||||| ||||||||| | || |
Sbjct 61 CTTTCACTGTCGATGGATTCAATTGGACGTTCAAAATCTACCCAAACGGAAACACCGATA 120
Query 233 CCACAAGAGGACTTATTTATCT-TTATGTAAAAATTGATGACTCAAGCATCACCGACCCA 291
|||||||||||||| ||||| | |||||||| ||||||| ||||||| ||||||||||||
Sbjct 121 CCACAAGAGGACTTGTTTAT-TGTTATGTAAGAATTGATAACTCAAGTATCACCGACCCA 179
Query 292 CCATTAGATGTGTATGCGGAGATCAAGTTCTTCGTCTACAACTATGGCATTAGCGAGTAT 351
|||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||
Sbjct 180 TCATTAGATGTGTATGCGGCGATCAAGTTCTTTGTCTACAACAATGGCATTAGCGAGTAT 239
Query 352 TATA--CATACCAAG 364
|||| |||||||||
Sbjct 240 TATATACATACCAAG 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5