BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46200.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484997 jgi|Araly1|484997|fgenesh2_kg.5__989__AT3G46200.1 1650 0.0
Ahg923310 jgi|Araly1|923310|scaffold_104591.1 531 6e-150
> Ahg484997 jgi|Araly1|484997|fgenesh2_kg.5__989__AT3G46200.1
Length=1116
Score = 1650 bits (893), Expect = 0.0
Identities = 1057/1134 (93%), Gaps = 19/1134 (2%)
Strand=Plus/Plus
Query 7 GAGCTTCTTCCATGGCGAAACTAGCAGAAGAGATGAATCCTGAAGGTTCACGATACCAGC 66
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 GAGCTTCTTCCATGGCGAAACTAGCACAAGAGATGAATCCTGAAGGTTCACGATACCAGC 60
Query 67 TTCTTCTCTCATGTCCTTCTGGCCTCTCTCCGTCTCAGGTCTCAGTGGATTTCTCGAAAT 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTTCTCTCATGTCCTTCTGGCCTCTCTCCGTCTCAGGTCTCAGTGGATTTCTCGAAAT 120
Query 127 CGCATGATCGGATTCCTCGTCAAGATCCTGGTCTAGAAGATTCTATTTCACAGGTTTGGG 186
|||||||||||||||||| || ||||||| ||| |||||||||||||| |||||||||
Sbjct 121 CGCATGATCGGATTCCTCATCCTGATCCTGATCTCGAAGATTCTATTTCTGAGGTTTGGG 180
Query 187 AGCAGAGATCACAGGGAAATTCATCATTGTTCAATGGCCAAAAATTTAGGTATGGAGGAT 246
|||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 AGCAAAGATCACAGAGCAATTCATCATTGTTCAATGGCCAAAAATTTAGGTATGGATCAT 240
Query 247 ATTGTTTAGATGATGATGATGGTAGTACCAATGAAGTGCCACACGTTTGTCTTCGTCTTG 306
||||||||| || |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 241 ATTGTTTAGGTGGTGATGATGGTGGTGCCAATGAAGTGCCACACGTTTGTCTTCGTCTTG 300
Query 307 GCCTGACAGATTACAGGACTTTTGTAGGAACGAATTTGAGTTCTCTGTGGGAGAAGTTCC 366
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 GCCTGACTGATTACAGGACTTTTGTAGGAACGAATTTGAGTTCTCTGTGGGAGAGGTTCC 360
Query 367 TTGTTACATCAGAAGATGACTCTGTTAGATGTCGACACACCTCAAGTCCATTGGGAAATG 426
||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 361 TTGTTCCATCAGAAGGTGACTCTGTAAGATGTCGACATACCTCAAGTCCATTGGGTAATG 420
Query 427 GTGCAGTTATCGAAACTTCTGATAAGAAGATTATTGTGTTACGTCGGAGTAATAATGTTG 486
||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 421 GTGCAGTTATCGAGACTTCTGACAAGAAGATTATTGTGTTACGCCGGAGTAATAATGTCG 480
Query 487 GGGAATTTCCAGGACACTATGTATTCCCTGGGGGCCATCCAGAGCCAACAGCAGTAGGTA 546
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 481 GGGAATTTCCAGGTCACTATGTATTCCCTGGGGGACATCCAGAGCCAACAGCAGTAGGCA 540
Query 547 TTGATTATCATCAGCTTGAAAACAATGTTCAAACCGGTGAGGTTTTAAACAAGAAGGTAA 606
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 541 TTGATTATCATCAGCTTGAAAATGATGTTCAAACCGGTGAAGTTTTAAACAAGAAGGTAA 600
Query 607 CTCAAGAAATGTTTGATAGCATTATCTGTGAAGTTGTCGAAGAAACTGGAATACCAGCAT 666
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 CTCAAGAAATGTTTGACAGTATTATCTGTGAAGTTGTTGAAGAAACTGGAATACCAGCAT 660
Query 667 CATCACTTAGCTCGCCTCTCTTCATCGGTATATCTCGAAGGGAGTTGAATGTAAGACCAG 726
||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 661 CATCACTTAGCCCGCCTCTCTTCATCGGTATATCTCGTAGGGAGTTGAATGTACGACCAG 720
Query 727 CTATGTTTTTCTACCTCAAGTGTAGTCATCATTCAGATGACATTCAAAGATTATACTCTA 786
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 721 CTATGTTTTTCTACCTCAAGTGTAGTCATCATTCAGATGATATTCCAAGATTATACTCTA 780
Query 787 GCGCTGAAGATGGGTTCGAGTCAACACAGCTCCACACTGTCTCATTGGATGAGCTGAAGA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCGCTGAAGATGGGTTCGAGTCAACACAGCTCCACACTGTCTCATTGGATGAGCTGAAGA 840
Query 847 TGATGACATCGAGAATGCCAGGTTGCCATCATGGCGGATTCGCTCTCTACGAACTGATGC 906
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 841 TGATGACATCGAGAATGCCTGGTTGCCATCATGGTGGATTCGCTCTCTACGAACTGATGC 900
Query 907 TTCAACG-TCTCAAGAACACTAAGGAAACGTCTTTAATAGCAACGTAAGAGGAAGATACT 965
||||||| | |||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 901 TTCAACGCTTTCAAGAACACTAAGGAAACGGCGTTAATAGCAACGTAAGAGGAA-ATACA 959
Query 966 TAAACTTTACACCTAGTTGTGAATTATTGTTTGCTAATGATCATGTCATTTTCGAGTAAC 1025
||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 960 TAAACTTTACACCAAGTTGTG--TTATGGTTTGCTAATGATCATGTCATTTTCGAGTAAA 1017
Query 1026 TTTTATTAGATTAACCGTATTAATTTGTAAAATCCATGATAATGAGTAACTATCATGTAA 1085
|||||||| | || | |||| ||| ||||||||||||||||||| || |||
Sbjct 1018 TTTTATTA--T-AAT--T-TTAA-----AAA-TCCATGATAATGAGTAACTG--AT-TAA 1062
Query 1086 TTCAGGGATAGAAAGCTCTAAGTTATGTTGGATAACAGGTTCATTTGTTCACAT 1139
||||||||| ||||||||||||||||||| ||||| ||||| ||||||| ||||
Sbjct 1063 TTCAGGGATCGAAAGCTCTAAGTTATGTTCGATAAAAGGTTAATTTGTTTACAT 1116
> Ahg923310 jgi|Araly1|923310|scaffold_104591.1
Length=714
Score = 531 bits (287), Expect = 6e-150
Identities = 535/647 (83%), Gaps = 48/647 (7%)
Strand=Plus/Plus
Query 332 AGGAACGAATTTGAGTTCTCTGTGGGAGAAG-TTCCTTGTTACATCAGAAGATGACTCTG 390
||||||||| |||||||||||||||||| || |||||| | |||||| ||||||||||||
Sbjct 104 AGGAACGAACTTGAGTTCTCTGTGGGAG-AGCTTCCTTATCACATCACAAGATGACTCTG 162
Query 391 TTAGATGTCGACACACCTCAAGTCCATTGGGAAATGGTGCAGTTATCGAAACTTCTGATA 450
| ||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 163 TAAGATGTCGACATACCTCAAGTCCATTGGGTAATGGTGCAATTATCGAGACTTCTGACC 222
Query 451 AGAAGATTATTGTGTTACGTCGGAGTAATAATGTTGGGGAATTTCCAGGACACTATGTAT 510
||||| ||||||||||||| |||||||||||||| |||||||| ||||| ||||| ||||
Sbjct 223 AGAAGCTTATTGTGTTACGCCGGAGTAATAATGTCGGGGAATTCCCAGGTCACTACGTAT 282
Query 511 TCCCTGGGGGCCATCCAGAGCCAACAGCAGTAGGTATTGATTATCATCAGCTTGAAAACA 570
| ||||| |||||||||||||||| ||| |||| ||||||| ||||||||||| | | |
Sbjct 283 TTCCTGGTGGCCATCCAGAGCCAATGGCAATAGGAATTGATTCTCATCAGCTTG-AGA-A 340
Query 571 ATGTTCAAACCGGTGAGGTTTTAAACAAGAAGGTAACTCAAGAAATGTTTGATAGCATTA 630
| | | ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 341 A-G-----A-TGGTGAGGTTTTAAACAAGAAGGTGACTCAAGAAATGTTTGACAGCATTA 393
Query 631 TCTGTGAAGTTGTCGAAGAAACTGGAATACCAGCATCATCACTTAGCTCGCCTCTCTTCA 690
| ||||||||||| | || ||| || |||| | | | | | ||
Sbjct 394 CCCGTGAAGTTGTC---G-AA---GAA-ACTGGCAT-A-C-C---G---G--------CA 428
Query 691 TCGGTATATCTCGAAGGGAGTT--GAATGTAAGACCAGCTATGTTTTTCTACCTCAAGTG 748
|| || ||| | |||||||| ||||| ||||||||||||||||||| | ||| |||
Sbjct 429 TC---ATCTCTTG-AGGGAGTTGAGAATGCGAGACCAGCTATGTTTTTCTTCATCAGGTG 484
Query 749 TAGTCATCATTCAGATGACATTCAAAGATTATACTCTAGCGCTGAAGATGGGTTCGAGTC 808
|||||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||
Sbjct 485 TAGTCATCATTCAGATGACATTCAAAAACTATACTCTAGTGCTGAAGATGGGTTTGAGTC 544
Query 809 AACACAGCTCCACACTGTCTC-ATTGGATGAGCTGAAGATGATGACATCGAGAATGCCAG 867
||||||||||||||||||||| || ||| |||||||||| ||||||||| ||||||||||
Sbjct 545 AACACAGCTCCACACTGTCTCTAT-GGACGAGCTGAAGACGATGACATCAAGAATGCCAG 603
Query 868 GTTGCCATCATGGCGGATTCGCTCTCTACGAACTGATGCTTCAACGTCTCAAGAACACTA 927
||||||| ||||| || || | |||||| || ||||||||||| ||||||||||| |||
Sbjct 604 GTTGCCACCATGGTGGTTTTGGGCTCTACTAATTGATGCTTCAAGGTCTCAAGAACTCTA 663
Query 928 AGGAAACGTC-TTTAATAGCAACGTAAGAGGAAG-ATACTTAAACTT 972
| ||||| | ||||| | | || |||||||| | | |||| |||||
Sbjct 664 ATGAAACA-CATTTAACATCGACCTAAGAGGACGCA-ACTTGAACTT 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5