BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46220.2
Length=2677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323273 jgi|Araly1|323273|fgenesh1_pm.C_scaffold_5000817 3818 0.0
Ahg314357 jgi|Araly1|314357|fgenesh1_pm.C_scaffold_1003137 1434 0.0
Ahg939079 jgi|Araly1|939079|scaffold_503270.1 73.1 1e-11
> Ahg323273 jgi|Araly1|323273|fgenesh1_pm.C_scaffold_5000817
Length=2415
Score = 3818 bits (2067), Expect = 0.0
Identities = 2323/2443 (95%), Gaps = 32/2443 (1%)
Strand=Plus/Plus
Query 127 ATGGATGATGAATTGTTGGAATTGCAGCGTCAGTTCGAGTTCGCTCAACAGGTGAAGTCA 186
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGATGATGAATTGTTGGAATTGCAGCGTCAGTTCGAGTTTGCTCAACAGGTGAAGTCA 60
Query 187 AGCGTGAGATTGTCGGATCGAAATGTTGTCGAATTGGTTCAGAAGCTTCAGGAGCTTGGC 246
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCGTGAGATTATCGGATCGAAATGTTGTCGAATTGGTTCAGAAGCTTCAGGAGCTTGGC 120
Query 247 GTTATTGACTTCGATCTGCTTCATACCGTCACCGGAAAAGAATACATCACTCAGGAGCAA 306
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTATAGACTTCGATCTGCTTCATACCGTCACCGGAAAAGAATACATCACTCAGGAGCAA 180
Query 307 TTGAGGAATGAAATTACTCGTGAGATCAGTAAATTGGGACGTGTCTCTGTTATTGATCTG 366
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TTGAGGAATGAAATTACTCGTGAGATTAGTAAATTGGGACGTGTCTCTGTTATTGATCTG 240
Query 367 GCAGATACGATTGGGGTTGATTTGTATCATGTGGAGAAGCAAGCACAAGATGTGGTGTTG 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAGATACGATTGGGGTTGATTTGTATCATGTGGAGAAGCAAGCACAAGATGTGGTGTTG 300
Query 427 AATGATCCAGGGTTAATGTTAGTTCAGGGAGAAATAATATCACAAAGTTATTGGGATTCG 486
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 301 AATGATCCAGGGTTAATGTTGGTTCAGGGAGAAATAATATCACAAAATTATTGGGATTCG 360
Query 487 ATTGCAGAAGAAATTAATGAGAGGCTTCAAGAGTGTAGCCAAATTGCTGTGGCTGAACTT 546
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 361 ATTGCAGAAGAAATTAATGAGAGGCTTCAAGAATGCAGCCAAATTGCTGTGGCTGAACTT 420
Query 547 GCTGGTCAGTTACAGGTTGGCTCTGAGTTGGTGCAATCGGTTTTAGAGCCTCGACTTGGA 606
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 421 GCTGGTCAGTTACAGGTTGGCTCTGAGTTAGTGCAATCGGTTTTGGAGCCTCGACTTGGA 480
Query 607 ACTTTGGTGAAAGCTAGGCTAGAAGGTGGACAGTTATATACACCTGCTTATGTAGAACGT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTTTGGTGAAAGCTAGGCTAGAAGGTGGACAGTTATATACACCTGCTTATGTAGAACGT 540
Query 667 GTGACCGCTATGGTTCGAGGTGCTTCCAGGGGTATATTTGTTCCTTCCAATTTGTCGGCA 726
||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||
Sbjct 541 GTGACCGCTATGGTTCGAGGTGCTTCCAGGGGTATTTTTGTTCCCTCCAACTTATCGGCA 600
Query 727 TTGTGGGCACCATTGCAACAGTTGGTACAAGAAACGAATGGAGCCAGTGGAGTTGCTGTT 786
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 TTGTGGGCACCATTGCAACAGTTGGTACAAGAAATGAATGGAGCCAGTGGAGTTGCTGTT 660
Query 787 GAGAATTCATTTTTCCAGTCTATATTTAACCGACTGTTGAAGGAAGAGGAGATGCTTGGA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGAATTCATTTTTCCAGTCTATATTTAACCGACTGTTGAAGGAAGAGGAGATGCTTGGA 720
Query 847 TCACTACGTGCTGGAACCCATTGGACTCCTAGTGCTTTTGCAACTGCTCAAAAGGAATGC 906
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||
Sbjct 721 TCACTACGTGCTGGAACCCATTGGACTCCTAGCGCTTTTGCAATTGCTCAAAAGGAGTGC 780
Query 907 GTAGACTCTTCTTTTTCACAGAATTCCTACATCTCCTATGAGAGCATGCAGAAGCTTGGG 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTAGACTCTTCTTTTTCACAGAATTCCTACATCTCCTATGAGAGCATGCAGAAGCTTGGG 840
Query 967 ATTTCTCAAGCTGTGCAGTTCTTACAGTCTAGATACCCAGATGGCACACCTTTAGCTGCT 1026
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 841 ATTTCTCAAGCTGTGCAGTTCTTACAGTCTAGATATCCAGATGGTACACCTTTAGCTGCT 900
Query 1027 GTATTTATTCATTCCTCAATGATTGAGATGCTGGATTCTGCAACTGAGGATGCTATTGAA 1086
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 901 GTATTTATTCATTCCTCAATGATTGAGATGCTGGATTCTGCAACCGAGGATGTTATTGAA 960
Query 1087 CAAAACAGTTGGATCGATTCCCTCTCTGTATTACCTTCATCGTTCACGTCACAGGATGCA 1146
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 961 CAAAACAGTTGGATCGATTCCCTCTCTGTATTACCTTCATCATTCACTTCACAGGATGCA 1020
Query 1147 AACAAGATGTTGCTTCTTTGTCCCTCTGTCCAATCAGCTCTCAAGGCTGAGAAAGCACTT 1206
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAAAAGATGTTGCTTCTTTGTCCCTCTGTCCAATCAGCTCTCAAGGCTGAGAAAGCACTT 1080
Query 1207 ATCTTGGGCGAATCCTATGTCCTAAGCAGTGGCTTTATCAAGGGAATATATGATCAAATT 1266
|||||||| ||||||||| |||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1081 ATCTTGGGTGAATCCTATATCCTGAGCAGTGGGTTTATCAAGGGCATATATGATCAAATT 1140
Query 1267 GAGAAAGAGGCAGATGCTTTTAGCATCCAAGCTTCTACTGCTACTTTGATACATCCTTCA 1326
|||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1141 GAGAAAGAGGCAGAAGCTTTTAGCATCCAAGCTTCTACTGCTAGTTTGATAGATCCTTCA 1200
Query 1327 AGCAAGTCGTCAGAGTCGACAGAAAGCATACCTGCCAATACAGATAAAGGGTCAAAGAAG 1386
||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1201 AGCAAATCGTCAGAGTCGACAGAAAGCATACCTGCTAATACGGAGAAAGGGTCAAAGAAG 1260
Query 1387 AAAAAAGGAAAGTCTG-CAAGCACGAAGGCAGCTACCGTTGAAACTGTTCCAGATGATGA 1445
|||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1261 AAAAAAGGGAAGTCTGTCA-GCATGAAGGCAGCTACCGTTGAAACTGTTCCAGATGATGA 1319
Query 1446 AGAGGATGCCCGTCCAAAATCTAAGAGAAACCAGAAGAAAGGAAGGGATTCATCTTCATC 1505
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1320 AGAGGATGCCCGTCCAAAATCTAAGAGAAACCAGAAGAAAGGCAGGGATTCATCGTCATC 1379
Query 1506 ACAGAAGTTGGATTCAAAAGCAGGAGGCAAGAAAGAGTCAGTTAAGGCGCAAGAAAGTAA 1565
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct 1380 ACAGAAGTTGGATTCAAAAGCAGGAGGCAAGAAAGAGTCGGTTAAGGCCCAAGAAAATAA 1439
Query 1566 TAACATT-ATTCCGCCAGACGAATGGGTGATGAAAAAGATCGTCGACTCTGTACCTGAAT 1624
|||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1440 TAAC-TTCATTCCTCCAGACGAATGGGTGATGAAAAAGATCGTCGACTCTGTGCCTGAAT 1498
Query 1625 TTGAAGATGATGGTACATCTGAGAACTTTTTCCTATGTACGGAGAACCCAGATTCGATTC 1684
|||||||||||||||| | || | | | ||||||||||||||
Sbjct 1499 TTGAAGATGATGGTAC----G-GA------------G-A---A---CCCAGATTCGATTC 1534
Query 1685 TTAAGCATTTAGCTGATCATATGAAACCGATGCTCATTAATTCACTGAAGGAGAGAAGAA 1744
| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1535 TAAAGAATTTAGCTGATCATATGAAACCTATGCTCATTAATTCACTAAAGGAGAGAAGAA 1594
Query 1745 AGAAAATCTTCACAGAAAATGCAGATAGAATGAGGCGCTTGATTGATGATCTGCAGAAAA 1804
||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1595 AGAAAATCTTCTCTGAAAATGCAGATAGATTGAGGCGCTTGATTGATGATCTGCAGAAAA 1654
Query 1805 AGCTTGATGAGTCTTTCCTAAATATGCAGCTGTACGAAAAAGCGCTAGACCTTTTCGAAG 1864
||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 1655 AGCTTGATGAGTCTTTCTTAAATATGCAGCTGTACGAAAAAGCTTTAGAGCTTTTTGAAG 1714
Query 1865 ATGACCAATC-AACTGCAGTTGTTTTACATAGGCATCTGCTGAGAACAACAGCAGCTACA 1923
|||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 ATGACCAATCGAATT-CGGTTGTTTTACATAGGCATCTGCTGAGAACAACAGCAGCTACA 1773
Query 1924 ATTGCTGATACACTTCTTCATGGCTTGGACATCCACAACAAAATGAAGAATGGTACTGAA 1983
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1774 ATTGCTGATACACTTCTTCATGGCTTGGACATCCACAACAAACTGAAGAATGGTACTGAA 1833
Query 1984 GTTGAAGAATCCAAAACGCAAGATCTAGTGT-TGCTTGATTCTTCTGAGAGAACAGCCCT 2042
|||| |||||||||||||||||||| ||| | |||||||||| ||||||||||| |||||
Sbjct 1834 GTTGGAGAATCCAAAACGCAAGATCAAGT-TCTGCTTGATTCCTCTGAGAGAACGGCCCT 1892
Query 2043 TGCTAAGAATCTCAACGGTTCACTTTCAAAAAAGGCTCTTGCACTAGTTGAGGCATTGGA 2102
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1893 TGCTAAGAATCTCAACGGTTCACTTTCGAAAAAGGCTCTTGCATTAGTTGAGGCATTGGA 1952
Query 2103 AGGAAAGCGTGTAGACACTTTCATGGTCACCTTCAGAGACCTGGCAGAAGAAAGTGGGTT 2162
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 1953 AGGAAAGCGTGTAGACACTTTCATGATCACCTTTAGAGACCTGGCAGAAGAAAGTGGATT 2012
Query 2163 AGTCTTGAAGAAGCTTGACAAAAAACTGGAAAGGACACTCCTACATTCATATCGTAAGGA 2222
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2013 AGTATTGAAAAAGCTTGACAAAAAACTGGAAAGGACACTCCTACATTCATACCGTAAGGA 2072
Query 2223 TTTGATATCTCAAGTTTCCACCGAATCAGACCCTATTGCACTTCTCGCTAAAGTTGTCTC 2282
|||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||
Sbjct 2073 TTTGATATCTCAAGTTTCTACCGAATCAGACCCTGTTGCACTTCTTGCTAAAGTTGTCTC 2132
Query 2283 CCTCCTTTTTATTAAGATTCACAATAAAGCTTTACAAGCCCCTGGTAGAGCCATTGCTGC 2342
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2133 TCTACTTTTTATTAAGGTTCACAATAAAGCTTTACAAGCCCCTGGTAGAGCCATTGCTGC 2192
Query 2343 GGCTATTTCACACTTGAAGGAAAAACTTGATGAATCTGCGTACAAGACTCTGACAGATTA 2402
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 2193 AGCTATTTCACACTTGAAGGATAAACTTGATGAATCTGCGTACAAGACTTTGACAGATTA 2252
Query 2403 CCAAACAGCAACTGTAACTCTTCTTGCTCTAATGTCAGCTTCATCCGGCGAGGAACATGA 2462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2253 CCAAACAGCAACTGTAACTCTTCTTGCTCTAATGTCAGCTTCATCCGGCGAGGAACATGA 2312
Query 2463 TTGCTCCGCAGACAGAATCTTGACCAAACGGGAACTTCTCGAGAGCCAGATGCCATTGCT 2522
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2313 CTGCTCCGCAGACAGAATCTTGACCAAACGGGAATTTCTCGAGAGCCAGATGCCATTGCT 2372
Query 2523 TAGAACCCTCGTCCTTGGTGACTCGCAGCCACAACAATCCTAA 2565
||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 2373 TAGAACCCTCGTCCTCGGCGACTCACAGCCACAACAATCCTAA 2415
> Ahg314357 jgi|Araly1|314357|fgenesh1_pm.C_scaffold_1003137
Length=2358
Score = 1434 bits (776), Expect = 0.0
Identities = 1113/1267 (88%), Gaps = 58/1267 (5%)
Strand=Plus/Plus
Query 790 AATTCATTTTTCCAGTCTATATTTAACCGACTGTTGAAGGAAGAGGAGATGCTTGGATCA 849
||||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 598 AATTCGTTTTTCCACTCTATATTTGATCGACTGTTGAAGGAAGAGGAGATGCTTGGATCA 657
Query 850 CTACGTGCTGGAACCCATTGGACTCCTAGTGCTTTTGCAACTGCTCAAAAGGAATGCGTA 909
|||||||||| || |||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 658 TTACGTGCTGGTACACATTGGACTCCTAGTGTTTTTGCAGTTGCTCAAAAGGAATGCGTA 717
Query 910 GACTC-TTCTTTTTCACAGAATTCCTACA-TCTCCTATGAGAGCATGCAGAAGCTTGGGA 967
||||| ||| || ||||||||||| || | || ||||||||| ||||||||||||||| |
Sbjct 718 GACTCTTTC-TTCTCACAGAATTCTTATATTC-CCTATGAGACCATGCAGAAGCTTGGAA 775
Query 968 -TT-TCTCAAGCTGTGCAGTTCTTACAGTCTAGATACCCAGATGGCACACCTTTAGCTGC 1025
|| |||||||| || |||||||| | | |||||||||||||| | ||||||||||||
Sbjct 776 TTTCTCTCAAGCCGTTCAGTTCTT--A--C-AGATACCCAGATGGTAAACCTTTAGCTGC 830
Query 1026 TGTATTTATTCATTCCTCAATGATTGAGATGCTGGATTCTGCAACTGAGGATGCTATTGA 1085
|||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||||
Sbjct 831 TGTATTTATTCATTCCTCGATGATTGAGATGCTGGATTCTACCACCGAGGATGCTATTGA 890
Query 1086 ACAAAACAGTTGGATCGATTCCCTCTCTGTATTACCTTCATCGTTCACGTCACAGGATGC 1145
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 891 ACAAAACAGCTGGATCGATTCCCTCTCTGTATTACCTTCATCATTCACGTCACAGGATGC 950
Query 1146 AAACAAGATGTTGCTTCTTTGTCCCTCTGTCCAATCAGCTCTCAAGGCTGAGAAAGCACT 1205
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 951 AAACAAGATGTTGCTTCTTTGTCCCTCCGTCCAATCAGCTCTCAAGGCTGAGAAAGCACT 1010
Query 1206 TATCTTGGGCGAATCCTATGTCCTAAGCAGTGGCTTTATCAAGGGAATATATGATCAAAT 1265
|||| ||||||| |||||||||||||||| ||| || || ||||||||||||||||||||
Sbjct 1011 TATCCTGGGCGAGTCCTATGTCCTAAGCAATGGGTTCATAAAGGGAATATATGATCAAAT 1070
Query 1266 TGAGAAAGAGGCAGATGCTTTTAGCATCCAAGCTTCTACTGCTACTTTGATACATCCTTC 1325
||||||||||||||| |||||||||||||||||||||| ||||| ||||||| ||| |||
Sbjct 1071 TGAGAAAGAGGCAGAAGCTTTTAGCATCCAAGCTTCTAATGCTAGTTTGATAGATCATTC 1130
Query 1326 AAGCAAGTCGTCAGAGTCGACAGAAAGCATACCTGCCAATAC-A----G-ATAAAGGGTC 1379
|||||| || ||||| ||| ||||||||||||||||| ||| | | ||||||| ||
Sbjct 1131 AAGCAAATCTTCAGAATCGGTAGAAAGCATACCTGCCAGTACTAATACGGATAAAGGATC 1190
Query 1380 AAAGAAGAAAAAAGGAAAGTCTG-CAAGCACGAAGGCAGCTACCGTTGAAACTGTTCCAG 1438
||||||||| ||||| ||||||| || ||| |||| |||| ||| ||| || ||| |||
Sbjct 1191 AAAGAAGAAGAAAGGCAAGTCTGTCA-GCATGAAGACAGCAACCAATGAGACGGTTTCAG 1249
Query 1439 ATGATGAAGAGGATGCCCGTCCAAAATCTAAGAGAAACCAGAAGAAAGGAAGGGATTCAT 1498
||||||||||||| |||||||| |||||||||||||||||||||||||| |||| | |
Sbjct 1250 ATGATGAAGAGGACGCCCGTCCTAAATCTAAGAGAAACCAGAAGAAAGGCAGGGG--C-T 1306
Query 1499 CTTCATCACAGAAGTTGGATTCAAAAGCAGGAGGCAAGAAAGAGTCAGTTAAGGCGCAAG 1558
| || | | || |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1307 CGTC-T-A-AG---TTGGATTCGAAAGCAGGAGGCAAGAAAGAGTCCGTTAAGGCGCAAG 1360
Query 1559 AAAGTAATAACATTATTCCGCCAGACGAATGGGTGATGAAAAAGATCGTCGACTCTGTAC 1618
|| |||||||| |||| ||||||||||| ||||||||||||||||||||||||| ||| |
Sbjct 1361 AAGGTAATAACTTTATCCCGCCAGACGAGTGGGTGATGAAAAAGATCGTCGACTTTGTGC 1420
Query 1619 CTGAATTTGAAGATGATGGTACATCTGAGAACTTTTTCCTATGTACGGAGAACCCAGATT 1678
|||| ||||||||||| | | | | ||| | ||||||||||||
Sbjct 1421 CTGAGTTTGAAGATGA----A-----G-G---T-------ATG---G-AGAACCCAGATT 1456
Query 1679 CGATTCTTAAGCATTTAGCTGATCATATGAAACCGATGCTCATTAATTCACTGAAGGAGA 1738
| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1457 CAATTCTTAAGCATTTGGCTGATCTTATGAGACCGATGCTCATTAATTCACTGAAGGAGA 1516
Query 1739 GAAGAAAGAAAATCTTCACAGAAAATGCAGATAGAATGAGGCGCTTGATTGATGATCTGC 1798
||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |
Sbjct 1517 GAAGAAAGAAAATCTTCACAGAAAATGCAGATAGAATGAAACGCTTGATGGAAAATCTTC 1576
Query 1799 AGAAAAAGCTTGATGAGTCTTTCCTAAATATGCAGCTGTACGAAAAAGCGCTAGACCT-T 1857
|||||||||||||||||||||||||||||||||| || ||||||||||| || || || |
Sbjct 1577 AGAAAAAGCTTGATGAGTCTTTCCTAAATATGCAACTTTACGAAAAAGCACTTGAGCTAT 1636
Query 1858 TTCGAAGATGACCAATCAAC-TGCAGTTGTTTTACATAGGCATCTGCTGAGAACAACAGC 1916
|| |||||||||||||| || | |||||||||||||||||||||| |||||||||||| |
Sbjct 1637 TT-GAAGATGACCAATCGACCT-CAGTTGTTTTACATAGGCATCTTCTGAGAACAACAAC 1694
Query 1917 AGCTACAATTGCTGATACACTTCTTCATGGCTTGGACATCCACAACAAAATGAAGAATGG 1976
||| ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 1695 AGCCACAATTGCTGATACACTTCTTCATGACTTGGACATCCTCAACAAATTGAAGAATGG 1754
Query 1977 TACTGAAGTTGAAGAATCCAAAACGCAAGAT-CTAGTGTTGCTTGATTCTTCTGAGAGAA 2035
||||||||||| ||| |||||||| |||||| | ||| |||||||| |||||||| ||||
Sbjct 1755 TACTGAAGTTGGAGACTCCAAAACTCAAGATAC-AGTTTTGCTTGACTCTTCTGAAAGAA 1813
Query 2036 CAGCCCT 2042
|||||||
Sbjct 1814 CAGCCCT 1820
Score = 448 bits (242), Expect = 1e-124
Identities = 312/346 (90%), Gaps = 4/346 (1%)
Strand=Plus/Plus
Query 2220 GGATTTGATATCTCAAGTTTCCACCGAATCAGACCCTATTGCACTTCTCGCTAAAGTTGT 2279
|||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 2013 GGATTTGACATCTCAAGTTTCTACCGAATCAGACCCTGTTGCACTTCTCGCTAAAGTTGT 2072
Query 2280 CTCCCTCCTTTTTATTAAGATTCACAATAAAGCTTTACAAGCCCCTGGTAGAGCCATTGC 2339
||||||||||| ||| ||| |||||||||||||||||||||||| || ||||| |||||
Sbjct 2073 CTCCCTCCTTTATATCAAGGCTCACAATAAAGCTTTACAAGCCCCAGGCAGAGCTATTGC 2132
Query 2340 TGCGGCTATTTCACACTTGAAGGAAAAACTTGATGAATCTGCGTACAAGACTCTGACAGA 2399
||| |||||||||||||||||||| ||||| ||||||||||||||||| ||| |||| ||
Sbjct 2133 TGCAGCTATTTCACACTTGAAGGATAAACTCGATGAATCTGCGTACAAAACTTTGACCGA 2192
Query 2400 TTACCAAACAGCAACTGTAACTCTTCTTGCTCTAATGTCAGCTTCATCCGGCGAGGAACA 2459
|||||| |||||||||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 2193 TTACCAGACAGCAACTGTAACTCTTCTTGCTCTAATGTCGGCTTCAACCGGAGAGGAACA 2252
Query 2460 TGATTGCTCCGCAGACAGAATCTTGACCAAACGGGAACTTCTCGAGAGCCAGATGCCA-T 2518
||| |||||| | ||||||||| |||||||||||||||| ||||||||||| |||||| |
Sbjct 2253 TGACTGCTCCTCTGACAGAATCCTGACCAAACGGGAACTCCTCGAGAGCCAAATGCCAGT 2312
Query 2519 TGCTTAGAACCCTCGTCCTTGGT-GACTCGCAGCCACAACAATCCT 2563
| ||||||| ||| ||| |||| ||||| ||||||||||||||||
Sbjct 2313 T-CTTAGAAGCCTTGTC-TTGGGCGACTCACAGCCACAACAATCCT 2356
Score = 425 bits (230), Expect = 6e-118
Identities = 511/636 (80%), Gaps = 61/636 (10%)
Strand=Plus/Plus
Query 127 ATGGATGATGAATTGTTGGAATTGCAGCGTCAGTTCGAGTTCGCTCAACAGGTG-A-AG- 183
|||||||| ||||||||||||||||| | ||||||||||||||||| |||||| | ||
Sbjct 1 ATGGATGAAGAATTGTTGGAATTGCAAAGACAGTTCGAGTTCGCTCAGCAGGTGAACAGT 60
Query 184 TC-A--------AG--CGTGAGATTGTCGGATCGAAATGTTGTCGAATTGGTTCAGAAGC 232
|| | || ||| ||||| || ||| ||||||| |||||||||||||||||||
Sbjct 61 TCGAGTTCGCTCAGCACGTCAGATTATCAGATGGAAATGTCGTCGAATTGGTTCAGAAGC 120
Query 233 TTCAGGAGCTTGGCGTTAT-TGACTTCGATCTGCTTCATACCGTCACCGGAAAAGAATAC 291
| || ||||| ||||| || |||| ||||| ||||| |||||||| ||||||||||||
Sbjct 121 TACAAGAGCTCGGCGTCATCCAACTTGGATCTCCTTCACACCGTCACTGGAAAAGAATAC 180
Query 292 ATCACTCAGGAGCAATTGAGGAATGAAATTACTCGTGAGATCAGTAAATTGGGACGTGTC 351
||||||||||||||||||| ||| ||||| || ||||||| |||||||| |||||||||
Sbjct 181 ATCACTCAGGAGCAATTGAAGAAAGAAATCGCTAGTGAGATTAGTAAATTAGGACGTGTC 240
Query 352 TCTGTTATTGATCTGGCAGATACGATTGGGGTTGA-TTTGTATCATGTGGAGAAGCAAGC 410
|||||||||||||| || ||||||||||| ||||| ||| |||||||| || |
Sbjct 241 TCTGTTATTGATCTTGCGGATACGATTGGTGTTGATTTTATATCATGT------GC--G- 291
Query 411 ACAAGATGTGGTGTTGAATGATCCAGGGTTAATG-TTAGTTCAGGGAGAAATAATATCAC 469
|| ||||| ||||||| |||||||| | ||||| || ||||| ||||| || |||||||
Sbjct 292 -CAGGATGTTGTGTTGAGTGATCCAGAGCTAATGCTT-GTTCAAGGAGAGATTATATCAC 349
Query 470 AAAGTTATTGGGATTCGATTGCAGAAGAAATTAATGAGAGGCTTCAAGAGTGTAGCCAAA 529
|||| |||| |||||| ||||||||||| || ||||||||||||||||| || ||||| |
Sbjct 350 AAAGGTATTCGGATTCAATTGCAGAAGAGATCAATGAGAGGCTTCAAGAATGCAGCCATA 409
Query 530 T-TGCTGTGGCTGAACTTGCTGGTCAGTTACAGGTTGGCTCTGAGTTGGTGCAATCGGTT 588
| | |||||||||| |||||| | | | || ||| | | ||||| | |||
Sbjct 410 TCT-CTGTGGCTGAGCTTGCT-G---G-T-CA-GTT---ACAG-GTTGG-G--ATC---- 450
Query 589 TTAGAGCCTCGACTTGGAACTTTGGTGAAAGCTAGGCTAGAAGGTGGACAGTTATATACA 648
|||| | | | | | | |||||||| |||||||||||||||||||||||||||
Sbjct 451 --AGAG--TTG-C-T-G--C---AGTGAAAGCAAGGCTAGAAGGTGGACAGTTATATACA 498
Query 649 CCTGCTTATGTAGAACGTGTGACCGCTATGGTTCGAGGTGCTTCCAGGGGTATATTTGTT 708
||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 499 CCTGCTTATGTAGCGCGTGTTACGGCTATGGTTCGAGGTGCTTCCAGGGGTATCTTTGTT 558
Query 709 CCTTCCAATTTGTCGG-CATTGTGGGCACCATTGCA 743
|||||||||||||| | |||||| | || |||||
Sbjct 559 CCTTCCAATTTGTCTTTCGTTGTGGACGCCGTTGCA 594
> Ahg939079 jgi|Araly1|939079|scaffold_503270.1
Length=863
Score = 73.1 bits (39), Expect = 1e-11
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 881 CTTTTGCAACTGCTCAAAAGGAATGCGTAGACTCTTCTTTTT 922
|||||||||||||||||||||||||||||||||||| |||||
Sbjct 212 CTTTTGCAACTGCTCAAAAGGAATGCGTAGACTCTTATTTTT 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100977239495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5