BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46240.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897440 jgi|Araly1|897440|Al_scaffold_0005_1406 1731 0.0
Ahg897443 jgi|Araly1|897443|Al_scaffold_0005_1409 575 3e-163
> Ahg897440 jgi|Araly1|897440|Al_scaffold_0005_1406
Length=1392
Score = 1731 bits (937), Expect = 0.0
Identities = 1203/1324 (91%), Gaps = 48/1324 (4%)
Strand=Plus/Plus
Query 14 GCGTAAACATAGACTGTGGAACGTCATTGCCAGGCGTAGACAACAACAACCTAAAATGGG 73
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 62 GCGTAAACATAGACTGTGGAACGTCATTGCCCGGTGTAGACAACAACAACCTAAAATGGG 121
Query 74 TCGGAGACCAAGACTTCATCACATCCGGAGACTCGGCTACTATTTCGTCCACCACCGTTG 133
|||||||| |||||||||||||||||||||| ||||| || |||||||||||||||| |
Sbjct 122 TCGGAGACAAAGACTTCATCACATCCGGAGAGTCGGCCACCGTTTCGTCCACCACCGTAG 181
Query 134 AGAAATCCCTCACCACACTTCGGTACTTTCCCACGGGCGACTCCAATTGCTACTCCAACA 193
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 182 AGAAATCCCTCACCACACTTCGGTACTTTCCCACCGGTGACTCCAATTGCTACTCCAACA 241
Query 194 TTCCGGTTACAAAAGGCGGAAAAGTTCTAGTGAGAACCATGTTTTACTACGGGAATTACG 253
|||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 242 TTCCAGTTACAAAAGGTGGAAAAGTTCTTGTGAGAACGATGTTTTACTACGGGAATTACG 301
Query 254 ACGGGAAGTCCTCAACCCCATCCTTCAGCGTAGTGTTTGAAGGGAAACACCGAGGCACCC 313
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 302 ACGGGAAGTCCTCAACCCCATCCTTCAACGTAGTGTTTGAAGGGAAACACCGAGGCACCG 361
Query 314 TATCGATATCCTCAGCATTCGAACCTTACCTTCTGGAGTTGATATTTTCCCCGGCCGGTG 373
|||||||||| || || ||||||||||| ||| ||||| |||||||||| |||||| | |
Sbjct 362 TATCGATATCATCGGCGTTCGAACCTTATCTTTTGGAGCTGATATTTTCTCCGGCCAGCG 421
Query 374 GAGAGACCAGCGTCTGTTTTGTACGTACTTCTTCATCATCAAACCCTTTTGTGTCTTCCA 433
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 422 GAGAGACCAGCGTTTGTTTTGTACGTACGTCTTCATCATCAAACCCTTTTGTATCTTCCA 481
Query 434 TTGAAGTTGT-CGACTTGGATGATGGCATGTATGCCGAGCTTGGTCCTGGTGAAGGTAGG 492
|||||||| | ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 482 TTGAAGTT-TCCGACTTGGACGATGGCATGTATAACGAGCTTGGTCCTGGTGAAGGTAGA 540
Query 493 TTTTGGCTTCCATCCGAGATAAACATATTGGTGACGGGAATACAGTCCACGGCTGTATCC 552
||||||||||||||||| ||||||||||||||||| ||||||| |||| |||||| |||
Sbjct 541 TTTTGGCTTCCATCCGATATAAACATATTGGTGACCGGAATACCGTCCGCGGCTGCATCG 600
Query 553 ATTGATACCTCTGGTGCATCAAACAAG-CCGCCTGAGTCCGTCCTCCGTAACTCTTGGAC 611
|| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 601 ATCGATACCTCTGGTGCATCAAAC-AGACCGCCTGAGTCCGTCCTCCGTAACTCTTGGAC 659
Query 612 CGGGGAAGGCTTATCATTAGT-CGACCCTACTCTTCCTTCAGCAGGAGTTCCGGTGTACT 670
||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 660 CGGAGAAGGCTTATCATTA-TACGACCCTACTCTTCCTTCGGCAGGAGTTCCGGTGTACT 718
Query 671 TGGCTATGTATTTCTCGGAGCCTCTAGAGTCAAGTTTACGATCGTTCAACATTTTCTTTG 730
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 719 TGGCTATGTATTTCTCGGAGCCTCTTCAGTCCAGTTTACGATCGTTCAACATTTTCTTTG 778
Query 731 GTGGTAAGCAAGTTGGTAGGGGTCCTGTTGTGCCTTTGTTTGGAAAAGCAACTCAAGTGG 790
||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 779 GTGGTAAGCAAGTTGGTAGGGGTCCTGTTGTGCCTGTGTTTGGAAAAGCCACACAAGTGG 838
Query 791 TCGTGAGAGATGTGGTGGCCAGTTCAAGCACCCTACTGACGCTCTGGTCCACTTCTAGTG 850
||||||||||| ||||||| || |||||||||| ||||||| | ||||||||| ||||||
Sbjct 839 TCGTGAGAGATCTGGTGGCAAGCTCAAGCACCCAACTGACGTTATGGTCCACTGCTAGTG 898
Query 851 CGCTTTTACCGCCCATGATAAATGCGGCCGAGCTTTATGTAATTAGTAAGGGTACAAGCG 910
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 899 CGCTTTTACCGCCCATGATAAATGCGGCCGAGCTTTATGTGATAAGTAAGGGTACAAGCG 958
Query 911 AAAGCACAGGCGGAAACGAAACTGGTTCCGGTTCAGGATCAGGATCCGGTGGAAGTGGAG 970
|| ||||||| ||||||| || | | ||||||||||||||||| |||||||| ||||
Sbjct 959 AAGGCACAGGTGGAAACGGAA--G-T---GGTTCAGGATCAGGATCAGGTGGAAGCGGAG 1012
Query 971 GAGGAGGATCTGGGAGCAGTGGATCCGGATCTGGCTCAGGTGGGACTAGCAAAGGAGGAA 1030
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1013 GAGGAGGATCTGGGAGCAGTGGATCCGGATCTGGCTCTGGTGGGAGTAGCAAAGGAGGAA 1072
Query 1031 CTGGAGG------TG--G--A-TC-A-----A-C--C-AATGGAAAGAGCAGTAAACTGC 1069
||||||| || | | || | | | | ||||||||||||||||||||||
Sbjct 1073 CTGGAGGAAGCAATGAAGTGAGTCCAGGTGGATCAACCAATGGAAAGAGCAGTAAACTGC 1132
Query 1070 CAATTATACTCGGTGTAGTGTCA-CCGGTTGCGTTTGTTCTTGTCGCATATGTGTTCATC 1128
|||||||||||||||| || || ||| ||||||||||||||||||||||||||||||||
Sbjct 1133 CAATTATACTCGGTGTGGTATCCGCCG-TTGCGTTTGTTCTTGTCGCATATGTGTTCATC 1191
Query 1129 GCTATAATCTTAGCTAATCGTCGCAAAGTGAGGCTGCAAGCCTTGGCTATGCCTACGTCC 1188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1192 GCTATAATCTTAGCTAATCGTCGCAAAGTGAGGCTGCAAGCCTTGGCTATGCCTACTTCC 1251
Query 1189 ACAGTGGCTACTATGGGGACTGGACCGTCAACTCTGTTCACACAACAGATGGACAATGAT 1248
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 1252 ACAGTGGCTAATATGGGGACTGGAGCGTCAACTCTGTTCACACAACAGATGGAAAACGAT 1311
Query 1249 TCTACATCAAACCAGCCTACAAATGAA--A----TGGGAGAGATCGACGACCTTACTGGA 1302
|| | | | |||||||||||||||| | |||| |||||||||||||||| ||||
Sbjct 1312 TC-A-A--A--CCAGCCTACAAATGAATCAGACATGGGGGAGATCGACGACCTTATTGGA 1365
Query 1303 -TGA 1305
|||
Sbjct 1366 ATGA 1369
> Ahg897443 jgi|Araly1|897443|Al_scaffold_0005_1409
Length=1461
Score = 575 bits (311), Expect = 3e-163
Identities = 429/485 (88%), Gaps = 12/485 (2%)
Strand=Plus/Plus
Query 14 GCGTAAACATAGACTGTGGAACGTCATTGCCAGGC-G-TAGACAACAACAACCTAAAATG 71
||||||| |||||||| |||||||||||||| || | ||||||| |||||| |||||||
Sbjct 62 GCGTAAATATAGACTGCGGAACGTCATTGCC--GCGGTTAGACAAGAACAACATAAAATG 119
Query 72 GGTCGGAGACCAAGACTTCATCACATCCGGAGACTCGGCTACTATTTCGTCCACCACCGT 131
||| |||||| |||||||||||||||||||||| || | || ||| ||||||||| ||
Sbjct 120 GGTAGGAGACAAAGACTTCATCACATCCGGAGAGTCTTCCACGGTTTTGTCCACCACTGT 179
Query 132 TGAGAAATCCCTCACCACACTTCGGTACTTTCCCACGGGCGACTCCAATTGCTACTCCAA 191
||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 180 CGAGAAATACCTCACCACACTTCGGTACTTTCCTACCGGCGACTCCAATTGCTACTCCAA 239
Query 192 CATTCCGGTTACAAAAGGCGGAAAAGTTCT-AGTGAGAACCATGTTTTACTACGGGAATT 250
|||||||||||| |||||||||||| |||| ||||||||| ||||||||||| ||||| |
Sbjct 240 CATTCCGGTTACCAAAGGCGGAAAA-TTCTTAGTGAGAACGATGTTTTACTATGGGAACT 298
Query 251 ACGACGGGAAGTCCTCAACCCCATCCTTCAGCGTAGTGTTTGAAGGGAAACACCGAGGCA 310
| || |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 299 ATGATGGGAAGTCCTCATCCCCAACCTTCAGCGTATTGTTTGAAGGGAAACACCGAGGCA 358
Query 311 CCCTATCGATATCCTCAGCATTCGAACCTTACCTTCTGGAGTTGATATTTTCCCCGGCCG 370
|| ||||||||||||| || ||||||||||||||| ||||| |||| ||||| |||||
Sbjct 359 CCGTATCGATATCCTCTGCGTTCGAACCTTACCTTTTGGAGCTGATCTTTTCTCCGGCTA 418
Query 371 GTGGAGAGACCAGCGTCTGTTTTGTACGTACTTCTTCATCATCAAACCCTTTTGTGTCTT 430
||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 419 GTGAAGAGACCAGCGTTTGTTTTGTACGTACGTCTTCATCATCAAACCCTTTTGTATCTT 478
Query 431 CCATTGAAGTTGTCGACTTGGATGATGGCATGTAT--GC----CGAGCTTGGTCCTGGTG 484
||||||||||| |||||||||| ||||||||||| | |||||||||||||||||
Sbjct 479 CCATTGAAGTTTTCGACTTGGAAAATGGCATGTATAAGTATAACGAGCTTGGTCCTGGTG 538
Query 485 AAGGT 489
|||||
Sbjct 539 AAGGT 543
Score = 536 bits (290), Expect = 1e-151
Identities = 633/792 (80%), Gaps = 49/792 (6%)
Strand=Plus/Plus
Query 485 AAGGTAGGTTTTGGCTTCCATCCGAGATAAACATATTGGTGACGGGAATA-CAGTCCACG 543
|||||||||| |||||||| | ||||||||||||||| |||| ||| || || ||||||
Sbjct 602 AAGGTAGGTTCTGGCTTCCGTTGGAGATAAACATATTGTTGACAGGAGTACCA-TCCACG 660
Query 544 GCTGTATCCATTGATACCTCTGGTGCATCAAACAAGCCGCCTGAGTCCGTCCTCCGTAAC 603
|||| ||| || |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 GCTGCATCAATCGATATCTCTGGTGCATCAAACAAGCCACCTGAGTCCGTCCTCCGTAAC 720
Query 604 TCTTGGACCGGGGAAGGCTTATCATTAGTCGACCCTACTCTTCCTTCAGCAGGAGTTCCG 663
||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 721 TCTTGGACCGGGGAAGGCTTATCATTAGTTGACCCTACTCTTCCTTCGGAAGGAGTTCCA 780
Query 664 GTGTACTTGGCTATGTATTTCTCGGAGCCTCTAGAGTCAAGTTTACGATCGTTCAACATT 723
|| || ||||||||||||||||| |||||||| |||| ||| ||||||||||||||||
Sbjct 781 GTTTATTTGGCTATGTATTTCTCAGAGCCTCTTGAGTTGAGTGTACGATCGTTCAACATA 840
Query 724 TTCTTTGGTGGTAAGCAAGTTGGTAGGGGTCCTGTTGTGCCTTTGTTTGGAAAAGCAACT 783
|| | ||| |||||||||||||||| || || ||||||| ||| ||||||||| ||
Sbjct 841 TTATATGGCGGTAAGCAAGTTGGTAAAGGACCAATTGTGCCCGTGTATGGAAAAGCCACG 900
Query 784 CAAGTGGTCGTGAGAGATGTGGTGGCCAGTTCAAGCACCCTA-CTGACGCTCTGGTCCAC 842
|||||||||||||||||||||||||| || |||||| || | ||| | || ||||||
Sbjct 901 CAAGTGGTCGTGAGAGATGTGGTGGCTAGCTCAAGCTCCG-AGCTGGTGTTCCAGTCCAC 959
Query 843 TTCTAGTGCGCTTTTACCGCCCATGATAAATGCGGCCGAGCTTTATGTAATTAGTAAGGG 902
|||||||||| ||||||||||| ||||||||| ||| ||||||| || |||| |||
Sbjct 960 CCCTAGTGCGCTGTTACCGCCCATTATAAATGCGTTGGAGATTTATGTGATAAGTACGGG 1019
Query 903 TACAAGCGAAAGCACAGGCGGAAACGAAA-CTGGTTCCGGTTCAGGATC-AGGATCCGGT 960
|||||| | |||| |||||||||| ||| | || || || || || | ||| | | |
Sbjct 1020 TACAAGTGGAAGCGGAGGCGGAAACAAAAGC-GGATCAGGATCCGG-TGGAGG-TGC--T 1074
Query 961 GGAAGTGGAGGAGGAGGATCTGGGAGCAGTGGATCCGGATCTGGCTCAGGTGGGACTAGC 1020
||||| ||||||||||| ||| ||| | ||||| ||| ||||| ||||| |||| |
Sbjct 1075 GGAAGCGGAGGAGGAGGGTCTAAGAGTGGCGGATCTGGA---GGCTCTGGTGGAACTAAC 1131
Query 1021 AAAGGAGGAACTGGAGG------TG--G--A--TCA--------A-CCAATG--G-AAAG 1056
|| |||||||||||||| || | | ||| | ||| || | ||||
Sbjct 1132 AATGGAGGAACTGGAGGGAGCAATGATGTGAGCTCAGGTGGGTCAGCCAGTGAAGGAAAG 1191
Query 1057 AGCAGTAAACTGCCAATTATACTCGGTGTAGTGTCA-CCG--GTTGCGTTTGTTCTTGTC 1113
| ||||||||||||| |||||||||| | ||| | ||| || | ||||| ||| ||
Sbjct 1192 AATAGTAAACTGCCAACTATACTCGGT-TC-TGT-ATCCGCAGTAGTGTTTGCTCTCATC 1248
Query 1114 GCATATGTGTTCATCGCTATAATCTTAGCTAATCGTCGCAAAGTGAGGCTGCAAGCCTTG 1173
|||||||||||||| ||| | |||||||| ||||||||||||| ||||| |||||| ||
Sbjct 1249 GCATATGTGTTCATTGCTGTTATCTTAGCGAATCGTCGCAAAGCAAGGCTACAAGCCCTG 1308
Query 1174 GCTATGCCTACGTCCACAGTGGCT-ACTATGGGGACTGGACCGTCAACTCTGTTCACACA 1232
||||| |||||||| | |||||| | ||||| |||||| | || |||| ||| |||
Sbjct 1309 GCTATACCTACGTC-A--GTGGCTCA-TATGGCTACTGGATCATCCCCTCTATTCGGACA 1364
Query 1233 ACAGATGGACAA 1244
||| |||| |||
Sbjct 1365 ACAAATGGGCAA 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5