BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46260.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897445 jgi|Araly1|897445|Al_scaffold_0005_1411 1884 0.0
Ahg897444 jgi|Araly1|897444|Al_scaffold_0005_1410 1195 0.0
Ahg897446 jgi|Araly1|897446|Al_scaffold_0005_1412 878 0.0
> Ahg897445 jgi|Araly1|897445|Al_scaffold_0005_1411
Length=1152
Score = 1884 bits (1020), Expect = 0.0
Identities = 1109/1152 (96%), Gaps = 5/1152 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAGTGGGCTCTTGTTGCTCGCATTTCTATCAACTTTGGTTACAGTTCACCAATTC 60
|||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1 ATGGAGAGTGGGATCTTGTTGCTCGCATTTATATCAACTTTGGTTATAGTTCACCAATTC 60
Query 61 CACATTATTCAAGCTCAAGAAGGTATAAGCATTGACTGTGGAACAACGGGTTCCTACGTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACATTATTCAAGCTCAAGAAGGTATAAGCATTGACTGTGGAACAACGGGTTCCTACGTG 120
Query 121 GACTCCAACAATGTAACATGGGTCGGAGATAAAGGCTTCGTCACCACCGGCGAGTCCATT 180
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 121 GACTCCAACAATGTAACATGGGTCGGAGATAATGGCTTCGTTACCACCGGCGAATCCATT 180
Query 181 AATATCACGGACGTCGTCAAA-AAACCGATCAATACCCTCCGGTACTTTCCAACAGGTCA 239
||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||
Sbjct 181 AATATCACGGACGTCGT-AAATAAACCGATCAATACCCTCCGGTACTTTCCAACCGGTCA 239
Query 240 AACAAATTGCTACACCAACATTCCAGCGACAAAAGGCCGGACCACCCTCGTGAGGACGAA 299
||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||
Sbjct 240 AACTAATTGCTACACCAACATTCCGGCGACAAAAGGCCGGAACACCCTTGTGAGGACGAA 299
Query 300 ATTTTACTACAAAAACTATGACGAGAATTACTCGCCACCATCTTTCGACGTGGTTTACGA 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATTTTACTACAAAAACTACGACGAGAATTACTCGCCACCATCTTTCGACGTGGTTTACGA 359
Query 360 TGGGAAACACCGTAATTCTATTGCTATGACAGTTGACTCGTTGTTCAGCGACGAGGAAAC 419
||||||||||||| |||||||||| || |||| ||||||||||||||||||||||||| |
Sbjct 360 TGGGAAACACCGTGATTCTATTGCGATTACAGCTGACTCGTTGTTCAGCGACGAGGAATC 419
Query 420 ATTCCATTACTCTGAGGTGATATTTGCTCCGGCGAATGAGAATATCAGCGTTTGCCTCGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATTCCATTACTCTGAGGTGATATTTGCTCCGGCGAATGAGAATATCAGCGTTTGCCTCAC 479
Query 480 CCGTACGTCTCCGTCCGATAACCCTTTTATATCTTCCATTGAAGTTTACCGCTTCGATGC 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 CCGTACGTCTCCGTCCGATAACCCTTTTATATCTTCCATTGAAGTTTACCACTTCGATGC 539
Query 540 CGGCATGTATGACGATCTTGGTCCTGAAGAAGGTTTCATTCTCTATAAAAGAAATGCGTA 599
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 CGGCATGTATGACGATCTTGGTCCTGAAGAAGGTCTCATTCTCTATAAAAGAAATGCGTA 599
Query 600 CGGTGCCACAAAGCTTATAAGCTACCCGTTAGATCCTTACGGTAGGCTATGGTCCCCAAA 659
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 600 CGGTGCCACAAAGCTTATAAGCTACCCGTTAGATCCTTACAGTAGGCTATGGTTCCCAAA 659
Query 660 AGGGTCCCAAGACTATCCCGGACTGATCGATCTTACAACCTCAGCCCCATCCATAGATAT 719
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 660 AGGGTCCCAAGACTACCCCGGACTGATCGATCTTACAACCTCAGCAACATCCATAGACAT 719
Query 720 CACCGGAGCGTTGAACAAACCGCCAGAGATTGTTATGACGAAGGCAATGTCAGGAGACGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CACCGGAGCGTTGAACAAACCGCCAGAGATTGTTATGACGAAGGCAATGTCAGGAGACGG 779
Query 780 CTTTATAATGTCCGGCCTGAATCTCCCCTCTA---CCCTTCTACCGGTATACTTAGCTCT 836
||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 780 CTTTACAATGTCCGGCCTGAATCTCCCCTCTAGTACCCCTCTACCGGTATACTTAGCTCT 839
Query 837 TTACTTTTCAGAGCCTCAGAGTCTAGGTCGGACCCAAAAACGATCGTTCACCGTTTTCTT 896
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 840 TTACTTCTCAGAGCCTCAGAGTCTAGGTCGGACCCAAAAACAATCGTTCACCGTTTTCTT 899
Query 897 GGACGGCATGCAAGTGGGTTCACATCCCATAGTACCAGTTTTTGGGAAAGCGACTCAAGT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGACGGCATGCAAGTGGGTTCACATCCCATAGTACCAGTTTTTGGGAAAGCGACTCAAGT 959
Query 957 CGTTTTAAGAGATATAATGGCCAGTTCGGAGTCCCAGTTAGTTTTTAAGTCAACCGATGA 1016
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 960 CGTTTTAAGAGATGTAATGGCTAGTTCGGAGTCCCAGTTAGTTTTTAAGTCAACCGATGA 1019
Query 1017 CTCGGGTTTGCCGACCATCATCAGTGGTTTGGAGGTCTATTCGATAAGTAACTACAAGGA 1076
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 CTCGGGTTTGCCGACCATCATCAGTGGTTTGGAGGTTTATTCGATAAGTAACTACAAGGA 1079
Query 1077 CCATGGAAGCGGAGGCGGGGGCCAAAGCGGCAGTAGTAATAATGGTAAGTTTTTATTGAA 1136
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1080 CCGTGGAAGCGGAGGCGGGGGCCAAAGCGGCAGTAGTAATAATGGTCAGTTTTTATTGGA 1139
Query 1137 CCTATGTAAATG 1148
|||||||| |||
Sbjct 1140 CCTATGTATATG 1151
> Ahg897444 jgi|Araly1|897444|Al_scaffold_0005_1410
Length=1398
Score = 1195 bits (647), Expect = 0.0
Identities = 945/1089 (87%), Gaps = 20/1089 (2%)
Strand=Plus/Plus
Query 11 GGCTCTTGTTGCTCGCATTTCTATCAACTTTGGTTA-CAGTTCACCAATTCCACATTA-T 68
|||| ||||||||||||| | |||||| ||||| || | |||||| || || |
Sbjct 17 GGCTTTTGTTGCTCGCATGTATATCAAATTTGGCTATTA-TTCACC--TTGTTCA--AGC 71
Query 69 TCAAGCTCAAGAA-GGTATAAGCATTGACTGTGGAACAACGGGTTCCTACGTGGACTCCA 127
||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 72 TCAAGATCAA-AATGGTATAAGCATTGACTGTGGAACAACGGGATCCTACGTGGACTCCA 130
Query 128 ACAATGTAACATGGGTCGGAGATAAAGGCTTCGTCACCACCGGCGAGTCCATTAATATCA 187
|||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |
Sbjct 131 ACAACGTAACATGGGTCGGAGATAATGGCTTTGTCACCACCGGCGAATCCATTAATATTA 190
Query 188 CGGACGTCGTCAAAAAACCGATCAATACCCTCCGGTACTTTCCAACAGGTCAAACAAATT 247
|||||||| || ||| |||||||| || |||||||| |||||||| ||||||||||| |
Sbjct 191 CGGACGTCACCACAAAGCCGATCAACACTCTCCGGTATTTTCCAACCGGTCAAACAAACT 250
Query 248 GCTACACCAACATTCCAGCGACAAAAGGCCGGACCACCCTCGTGAGGACGAAATTTTACT 307
|||||||||||||||| |||||||||| || || ||||| ||||||||||| |||||||
Sbjct 251 GCTACACCAACATTCCGGCGACAAAAGACCAGAAAACCCTTGTGAGGACGAAGTTTTACT 310
Query 308 ACAAAAACTATGACGAGAA-TTACTCGCCACCATCTTTCGACGTGGTTTACGATGGGAAA 366
| | ||||||||||| || || |||||| |||||||| ||| | ||||| || ||||||
Sbjct 311 ATGAGAACTATGACGACAAGTT-CTCGCCGCCATCTTTTGACATAGTTTATGACGGGAAA 369
Query 367 CACCGTAATTCTATTGCTATGACAGTTGACTCGTTGTTCAGCGACGAGGAAACATTCCAT 426
|||||| ||||||||| || || ||| || || ||| ||||||||| |||||| ||
Sbjct 370 CACCGTGATTCTATTGAAATTAC---TGAATCATTACTCAACGACGAGGACACATTCTAT 426
Query 427 TACTCTGAGGTGATATTTGCTCCGGCGAATGAGAATATCAGCGTTTGCCTCGTCCGTACG 486
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 427 TTCTCTGAGGTGATATTTGCTCCGGCGAATGAGAATATCAGCGTTTGCCTCCTCCGTACT 486
Query 487 TCTCCGTCCGATAACCCTTTTATATCTTCCATTGAAGTTTACCGCTTCGATGCCGGCATG 546
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 487 TCTCCGTCCGATAACCCTTTTATATCTTCCATTGAAGTTTACAGCTTCGATGCCGGCATG 546
Query 547 TATGACGATCTTGGTCCTGAAGAAGGTTTCATTCTCTATAAAAGAAATGCGTACGGTGCC 606
|| || ||| ||||||||||||||||| ||||||||||| |||||| | |||||||||||
Sbjct 547 TACGAAGATGTTGGTCCTGAAGAAGGTCTCATTCTCTATGAAAGAATTACGTACGGTGCC 606
Query 607 ACAAAGCTTATAAGCTACCCGTTAGATCCTTACGGTAGGCTATGGTCCCCAAAAGGGTCC 666
| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 607 AAAAAGCTTATAAGCTACCCGTTAGATCCTTACGGTAGGCTATGGTCTCCGTCAGGGTCC 666
Query 667 CAAGACTATC-CCGGACTGATCGATCTTACAACCTCAGCCCCATCCATAGATATCACCGG 725
||||| | | ||| ||||| |||||| ||||||||||||||||| ||||| ||||||||
Sbjct 667 GAAGACAA-CACCGCACTGACCGATCTAACAACCTCAGCCCCATCGATAGACATCACCGG 725
Query 726 AGCGTTGAACAAACCGCCAGAGATTGTTATGACGAAGGCAATGTCAGGAGACGGCTTTAT 785
|||| ||||| |||||||||||||||||| |||||||| |||||||||| ||||| ||
Sbjct 726 GGCGTCAAACAAGCCGCCAGAGATTGTTATGTCGAAGGCATTGTCAGGAGATGGCTTAAT 785
Query 786 AATGTCCGGCCTGAATCTCCCCTCTACC-CTTCTACCGGTATACTTAGCTCTTTACTTTT 844
|| ||||||||| ||||||||| || || || ||||||||| ||||||||||| |
Sbjct 786 CATCTCCGGCCTGCCTCTCCCCTCAACTGCTG-TATTGGTATACTTGGCTCTTTACTTCT 844
Query 845 CAGAGCCTCAGAGTCTAGGTCGGACCCAAAAACGATCGTTCACCGTTTTCTTGGACGGCA 904
| |||||||||||||||||||||||||| ||||||||||||| | ||||||||||| ||
Sbjct 845 CGGAGCCTCAGAGTCTAGGTCGGACCCAGAAACGATCGTTCAACATTTTCTTGGACAACA 904
Query 905 TGCAAGTGGGTTCACATCCCATAGTACCAGTTTTTGGGAAAGCGACTCAAGTCGTTTTAA 964
|||||||||||||||||||||| ||||| |||||||||||||| |||||| ||||||| |
Sbjct 905 TGCAAGTGGGTTCACATCCCATCGTACCGGTTTTTGGGAAAGCTACTCAACTCGTTTTGA 964
Query 965 GAGATATA-ATGGCCAGTTCGGAGTCCCAGTTAGTTTTTAAGTCAACCGATGACTCGGGT 1023
||||| || | ||||| ||||||||||||| |||| |||||||| || |||||||||| |
Sbjct 965 GAGATGTAGA-GGCCACTTCGGAGTCCCAGATAGTCTTTAAGTCTACGGATGACTCGGTT 1023
Query 1024 TTGCCGACCATCATCAGTGGTTTGGAGGTCTATTCGATAAGTAACTACAAGGACCATGGA 1083
||||| |||||||||| |||||||||| | ||||| ||||||||| || || || ||||
Sbjct 1024 TTGCCAACCATCATCAATGGTTTGGAGCTATATTCAATAAGTAACAACCAGCACGGTGGA 1083
Query 1084 AGCGGAGGC 1092
|||||||||
Sbjct 1084 AGCGGAGGC 1092
> Ahg897446 jgi|Araly1|897446|Al_scaffold_0005_1412
Length=1371
Score = 878 bits (475), Expect = 0.0
Identities = 858/1040 (83%), Gaps = 37/1040 (4%)
Strand=Plus/Plus
Query 74 CTCA-AGAAGGTATAAGCATTGACTGTGGAACAACGGGTTCCTACGTGGACTCCAACAAT 132
|||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 52 CTCACAGAAAGTATAAGCATTGACTGTGGAACAACGGGATCCTACGTGGACTCCAACAAT 111
Query 133 GTAACATGGGTCGGAGATAAAGGCTTCGTCACCACCGGCGAGTCCATTAATA-TCACGGA 191
|||||||||||||||||||| |||||||||||||||||| || |||| || | | |||||
Sbjct 112 GTAACATGGGTCGGAGATAATGGCTTCGTCACCACCGGCAAGCCCATGAACAAT-ACGGA 170
Query 192 CGTCGTCAAAAAACCGATCAATACCCTCCGGTACTTTCCAACAGGTCAAACAAATTGCTA 251
||| |||| ||| || ||||| | |||||| ||||| || | |||||||| || |||||
Sbjct 171 CGTTGTCACAAAGCCAATCAACAACCTCCGATACTTCCCTTCCGGTCAAACCAACTGCTA 230
Query 252 CACCAACATTCCAGCGACAAAAGGCCGGACCACCCTCGTGAGGACGAAATTTTACTACAA 311
|||||||||||| | || |||||||||| | ||||||||||||||||| ||||||| |
Sbjct 231 CACCAACATTCCGGTAACCAAAGGCCGGAAAAACCTCGTGAGGACGAAATATTACTACGA 290
Query 312 AAACTATGACGAGAATTACTCGCCACCATCTTTCGACGTGGTTTACGATGGGAAACACCG 371
||||| |||| |||||||||||| |||||||| |||||| |||||||||| ||||||||
Sbjct 291 GAACTACGACGGGAATTACTCGCCGCCATCTTTTGACGTGATTTACGATGGAAAACACCG 350
Query 372 TAATTCTATTGCTATGACAGTTGACTCGTTGTTCAGCGACGAGGAAACATTCCATTACTC 431
| ||||||||| || || | || || | | ||| ||||||||| | ||| ||| |||
Sbjct 351 TGATTCTATTGAAATTAC--T-GAGTCATCGGTCAACGACGAGGAGAGGTTCTATTTCTC 407
Query 432 TGAGGTGATATTTGCTCCGGCGAATGAGAATATCAGCGTTTGCCTCGTCCGTACGTCTCC 491
||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 408 GGAGTTGATATTTGCTCCGGCGAATGAGAATATCAGCGTTTGCTTCTTCCGTACGTCTCC 467
Query 492 GTCCGATAACCCTTTTATATCTTCCATTGAAGTTTACCGCTTCGATGCCGGCATGTATGA 551
|||| ||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
Sbjct 468 GTCCCATAACCCTTTTATTTCTTCCATTGAAGTTTACAGCTTCGATACCGGCATGTACGC 527
Query 552 CGATCTTGGTCCTGAA-GAAGGTTTCATTCT-CTATAAAAGAAATGCGTACGGTGCCACA 609
|||||||||||| || |||||| ||||||| | | ||| || || | || ||||| |
Sbjct 528 CGATCTTGGTCCC-AACGAAGGTCTCATTCTTCAAGAAA-GATATACCTATGGTGCTG-A 584
Query 610 A-AG-CTTATAAGCTACCCGTTAGATCCTTACGGTAGGCTATGGTCCCCAAAAGGGTCCC 667
| || || |||||||||||| |||| ||||| ||||||||||||| || ||| |||
Sbjct 585 AGAGTCT-ATAAGCTACCCGCTAGACCCTTATGGTAGGCTATGGTTACCGTCAGGTTCCG 643
Query 668 AAGACTA-TCCCGGACTGATCG-ATCTTACA-ACCTCAGCCCCATCCATAGATATCACCG 724
|| || | || | ||||| || |||| | | |||||||| ||||| ||||| |||||||
Sbjct 644 AATAC-AGTCTCTCACTGA-CGGATCTCA-AGACCTCAGCTCCATCAATAGACATCACCG 700
Query 725 GAG-CGT-TGAACAAACCGCCAGAGATTGTTATGACGAAGGCAATGTCAGGAGACGGCTT 782
| | | | | ||||| || ||||||||||||||| | |||||| |||||||||| ||||
Sbjct 701 GGGTC-TCT-AACAAGCCACCAGAGATTGTTATGTCAAAGGCATTGTCAGGAGATAGCTT 758
Query 783 TATAATGTCCGGCCTGAATCT---CCCCTCTACCCT-TCTACCGGTATACTTAGCTCTTT 838
||| | ||| | || ||| ||||| || || |||||||||||| ||||||||||
Sbjct 759 AATACTCTCCAACATGGGTCTGATCCCCT-TAACCGGTCTACCGGTATATTTAGCTCTTT 817
Query 839 ACTTT-TCAGAGCCTCAGAGTCTAGGTCGGACCCAAAAACGATCGTTCACCGTTTTCTTG 897
| ||| || |||||||||||||||||||||||||| | || ||||||| |||||| |||
Sbjct 818 A-TTTCTCTGAGCCTCAGAGTCTAGGTCGGACCCAGAGGCGGTCGTTCAACGTTTTTTTG 876
Query 898 GACGGCATGCAAGTGGGTTCACATCCCATAGTACCAGTTTTTGGGAAAGCGACTCAAGTC 957
|| | || |||||||||||| |||||| || || |||||||| ||||| |||||||||
Sbjct 877 GATGACACAAAAGTGGGTTCACGTCCCATCGTCCCGGTTTTTGGAAAAGCTACTCAAGTC 936
Query 958 GTTTTAAGAGATATAATGGCCAGTTC-GGAGTCCCAGTTAGTTTTTAAGTCAACCGATGA 1016
|||| |||||| || |||||| || ||| || ||| |||| ||| |||||||||||||
Sbjct 937 ATTTTGAGAGATGTAGTGGCCACCTCCGGA-TCTCAGATAGTCTTTCAGTCAACCGATGA 995
Query 1017 CTCGGGTT-TGCCGACCATCATCAGTGGTTTGGAGGTCTATTCGATAAGTAACTA-CAAG 1074
|||| || ||||| ||||||||| |||||||||| ||||||||||||||||| | | |
Sbjct 996 TTCGG-TTCTGCCGCCCATCATCAATGGTTTGGAGCTCTATTCGATAAGTAAC-AGCCGG 1053
Query 1075 GACCATGGAAGCGGAGGCGG 1094
|| |||| ||||||||||
Sbjct 1054 GATGGTGGAGGCGGAGGCGG 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5