BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46270.1
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897444 jgi|Araly1|897444|Al_scaffold_0005_1410 1945 0.0
Ahg897445 jgi|Araly1|897445|Al_scaffold_0005_1411 1105 0.0
Ahg897446 jgi|Araly1|897446|Al_scaffold_0005_1412 948 0.0
> Ahg897444 jgi|Araly1|897444|Al_scaffold_0005_1410
Length=1398
Score = 1945 bits (1053), Expect = 0.0
Identities = 1294/1408 (92%), Gaps = 26/1408 (2%)
Strand=Plus/Plus
Query 15 ATGGAGAGTCCCCATGGGGTTTTGTTACTCGCATTTATATCAACTTTGGCTATTGTTCAC 74
|||||||||| |||| || ||||||| ||||||| |||||||| |||||||||| |||||
Sbjct 1 ATGGAGAGTCGCCATAGGCTTTTGTTGCTCGCATGTATATCAAATTTGGCTATTATTCAC 60
Query 75 CTTGTTCAAGCTCAGGATCAAAAAGGTATAAGCATTGACTGTGGAACAACGGGATCCTAC 134
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGTTCAAGCTCAAGATCAAAATGGTATAAGCATTGACTGTGGAACAACGGGATCCTAC 120
Query 135 GTGGACTCCAACAACGTAACATGGGTCGGAGATAAGGG-TTTCGTCACCACCGGCGAATC 193
||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 121 GTGGACTCCAACAACGTAACATGGGTCGGAGATAATGGCTTT-GTCACCACCGGCGAATC 179
Query 194 CATTAATATTACGGACGTCACCACAAAGCCGATCAATACTCTCCGGTATTTTCCAACCGG 253
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 CATTAATATTACGGACGTCACCACAAAGCCGATCAACACTCTCCGGTATTTTCCAACCGG 239
Query 254 TCAAACAAACTGCTACACCAATATTCCGGTGACAAAAGGC-AGGAAAACCCTCGTGAGGA 312
||||||||||||||||||||| ||||||| |||||||| | || |||||||| |||||||
Sbjct 240 TCAAACAAACTGCTACACCAACATTCCGGCGACAAAAGACCAG-AAAACCCTTGTGAGGA 298
Query 313 CGAAGTACTACTACGAGAACTACGATGACAAGTTCTCGCCGCCATCTTTCGACATAGTTT 372
|||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 299 CGAAGTTTTACTATGAGAACTATGACGACAAGTTCTCGCCGCCATCTTTTGACATAGTTT 358
Query 373 ATGACGGGAAACACCGTGATTCTGTTGATATTACTGAGTCGTTACTCGACGACGAGGACA 432
||||||||||||||||||||||| |||| |||||||| || |||||| ||||||||||||
Sbjct 359 ATGACGGGAAACACCGTGATTCTATTGAAATTACTGAATCATTACTCAACGACGAGGACA 418
Query 433 CATTTTATTTCTCTGAGGTGATTTTTGCTCCGGCGAGTGAGAATATCAGCGTTTGCCTTC 492
|||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
Sbjct 419 CATTCTATTTCTCTGAGGTGATATTTGCTCCGGCGAATGAGAATATCAGCGTTTGCCTCC 478
Query 493 TCCGTACGTCTCCGTCCGATAACCCTTTTATATCTTCCATTGAAGTTTACAGCTTCGATG 552
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCCGTACTTCTCCGTCCGATAACCCTTTTATATCTTCCATTGAAGTTTACAGCTTCGATG 538
Query 553 ACGGCATGTACAAAGATCTTGGTCCTGAAGAAGGTCTCATTCTCTATCAAAGAATTACGT 612
|||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 539 CCGGCATGTACGAAGATGTTGGTCCTGAAGAAGGTCTCATTCTCTATGAAAGAATTACGT 598
Query 613 ACGGAGCCAAAAAGCTTATAAGCTATCCGTTAGATCCTTTCGGTAGGCTATGGTCTCCGT 672
|||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 599 ACGGTGCCAAAAAGCTTATAAGCTACCCGTTAGATCCTTACGGTAGGCTATGGTCTCCGT 658
Query 673 CAGCGTCCGGAGACAACACCGCACTGACCGATCTATCGACCTCAGCCCCATCTATAGACA 732
||| ||||| ||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 659 CAGGGTCCGAAGACAACACCGCACTGACCGATCTAACAACCTCAGCCCCATCGATAGACA 718
Query 733 TCACCGGGGCGTCTAACAAGCCGCCAGAGATTGTTATGTCCAAGGCATTGTCAGGAGACG 792
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 719 TCACCGGGGCGTCAAACAAGCCGCCAGAGATTGTTATGTCGAAGGCATTGTCAGGAGATG 778
Query 793 GCTTAATCATCTCCGACCTGCCTCTCCCCTCAACTGCTACACTGGTATATTTGGCTCTTT 852
||||||||||||||| |||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 779 GCTTAATCATCTCCGGCCTGCCTCTCCCCTCAACTGCTGTATTGGTATACTTGGCTCTTT 838
Query 853 ACTTCTCGGAGCCTCAGAGTCTAGGTCGGACCCAGAAACGATCGTTCAACGTTTTCTTGG 912
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 839 ACTTCTCGGAGCCTCAGAGTCTAGGTCGGACCCAGAAACGATCGTTCAACATTTTCTTGG 898
Query 913 ACGACATGCAAGTGGGTTCACATCCCATCGTACCGGTTTTTGGGAAAGCGACTCAACTCG 972
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 ACAACATGCAAGTGGGTTCACATCCCATCGTACCGGTTTTTGGGAAAGCTACTCAACTCG 958
Query 973 TTTTGAGAGATGTAGAGGCCACTTCGGGGTCCCAAATAGTCTTAAAGTCTACTGATGACT 1032
||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||||||
Sbjct 959 TTTTGAGAGATGTAGAGGCCACTTCGGAGTCCCAGATAGTCTTTAAGTCTACGGATGACT 1018
Query 1033 CGGTATTGCCGACCATGATCAATGGTTTGGAGCTATATTCCATAAGTAACAATCAGCACG 1092
|||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1019 CGGTTTTGCCAACCATCATCAATGGTTTGGAGCTATATTCAATAAGTAACAACCAGCACG 1078
Query 1093 GTGGAAGCGGAGGAAAAAGcggtggtggtgataacggtggtggcggggggcaaagcggtg 1152
||||||||||||| ||||||||||||||| | || || | | ||||||||||
Sbjct 1079 GTGGAAGCGGAGGCCAAAGCGGTGGTGGTGGT---GG-GG-G-C------CAAAGCGGTG 1126
Query 1153 gtggtaataatggtgggA-CAAATTTAAAAGGAGGAAAGAAAAAGAACAGCTTACCACTC 1211
|||||||||||||||||| |||| | | ||| || ||||||||||| ||||||||||
Sbjct 1127 GTGGTAATAATGGTGGGAGCAAAGT-A---GGA--AA-GAAAAAGAACAACTTACCACTC 1179
Query 1212 ATTCTAGGCGTTACATTCGCCTCCGTATTCGTAATTCTCTGGTCAGCGTTTGTGGTTAAT 1271
||| | || ||||| ||||||||||| ||||| || ||||||||||||| |||||||||
Sbjct 1180 ATTTTGGGAGTTACGTTCGCCTCCGTGTTCGTTGTTTTCTGGTCAGCGTTCGTGGTTAAT 1239
Query 1272 ATTTTGAGAAAGCGTCAAAATGCGAAGCCAGTGTCCAACACAGCACCAACTACTTCCACA 1331
||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||
Sbjct 1240 ATTTTGAGAAAGCGTCAAAATGCGAAGCCAGAGTCCAACACAGCACCATCTACGTCCACA 1299
Query 1332 GAGCGTGGGATAGGCACAGG-GACGTCACCTCTATTTGGACAAGAAATGGCCAGTGACAC 1390
|||| ||| ||||| ||||| || ||||||||||||||||||| ||| |||||| |||||
Sbjct 1300 GAGCATGGAATAGGAACAGGAGA-GTCACCTCTATTTGGACAACAAACGGCCAGCGACAC 1358
Query 1391 GAATGATTCGTACGTTGTTCAAAATGAA 1418
|||||||||||| ||||||||| |||||
Sbjct 1359 GAATGATTCGTATGTTGTTCAAGATGAA 1386
> Ahg897445 jgi|Araly1|897445|Al_scaffold_0005_1411
Length=1152
Score = 1105 bits (598), Expect = 0.0
Identities = 940/1101 (85%), Gaps = 39/1101 (4%)
Strand=Plus/Plus
Query 29 TGGGGTTTTGTTACTCGCATTTATATCAACTTTGGCTATTGTTCACCTTGTT-CA-A--G 84
|||| | ||||| |||||||||||||||||||||| ||| ||||||| || || |
Sbjct 9 TGGGATCTTGTTGCTCGCATTTATATCAACTTTGGTTATAGTTCACC-AATTCCACATTA 67
Query 85 CTCAGGATCAAAAAGGTATAAGCATTGACTGTGGAACAACGGGATCCTACGTGGACTCCA 144
||| | |||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 68 TTCAAGCTCAAGAAGGTATAAGCATTGACTGTGGAACAACGGGTTCCTACGTGGACTCCA 127
Query 145 ACAACGTAACATGGGTCGGAGATAAGGGTTTCGTCACCACCGGCGAATCCATTAATATTA 204
|||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| |
Sbjct 128 ACAATGTAACATGGGTCGGAGATAATGGCTTCGTTACCACCGGCGAATCCATTAATATCA 187
Query 205 CGGACGTCACCACA-AAGCCGATCAATACTCTCCGGTATTTTCCAACCGGTCAAACAAAC 263
|||||||| | | || ||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 188 CGGACGTC-GTAAATAAACCGATCAATACCCTCCGGTACTTTCCAACCGGTCAAACTAAT 246
Query 264 TGCTACACCAATATTCCGGTGACAAAAGGCAGGAAAACCCTCGTGAGGACGAAGTACTAC 323
||||||||||| ||||||| |||||||||| |||| ||||| ||||||||||| | |||
Sbjct 247 TGCTACACCAACATTCCGGCGACAAAAGGCCGGAACACCCTTGTGAGGACGAAATTTTAC 306
Query 324 TACGAGAACTACGATGACAAGTT-CTCGCCGCCATCTTTCGACATAGTTTATGACGGGAA 382
||| | |||||||| || || || |||||| |||||||||||| | ||||| || |||||
Sbjct 307 TACAAAAACTACGACGAGAA-TTACTCGCCACCATCTTTCGACGTGGTTTACGATGGGAA 365
Query 383 ACACCGTGATTCTGTTGATATT--A-CTGAGTCGTTACTCGA-CGACGAGGACA-CATTT 437
||||||||||||| ||| ||| | |||| ||||| || | ||||||||| | ||||
Sbjct 366 ACACCGTGATTCTATTGCGATTACAGCTGACTCGTTGTTC-AGCGACGAGGA-ATCATTC 423
Query 438 TATTTCTCTGAGGTGATTTTTGCTCCGGCGAGTGAGAATATCAGCGTTTGCCTTC-TCCG 496
||| |||||||||||| ||||||||||||| |||||||||||||||||||| || |||
Sbjct 424 CATTACTCTGAGGTGATATTTGCTCCGGCGAATGAGAATATCAGCGTTTGCC-TCACCCG 482
Query 497 TACGTCTCCGTCCGATAACCCTTTTATATCTTCCATTGAAGTTTAC-AGCTTCGATGACG 555
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 483 TACGTCTCCGTCCGATAACCCTTTTATATCTTCCATTGAAGTTTACCA-CTTCGATGCCG 541
Query 556 GCATGTACAAAGATCTTGGTCCTGAAGAAGGTCTCATTCTCTATCAAAGAATTACGTACG 615
||||||| | ||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 542 GCATGTATGACGATCTTGGTCCTGAAGAAGGTCTCATTCTCTATAAAAGAAATGCGTACG 601
Query 616 GAGCCAAAAAGCTTATAAGCTATCCGTTAGATCCTTTCGGTAGGCTATGGTCTCCGTCA- 674
| |||| ||||||||||||||| ||||||||||||| | |||||||||||| ||| |
Sbjct 602 GTGCCACAAAGCTTATAAGCTACCCGTTAGATCCTTACAGTAGGCTATGGT-TCCCAAAA 660
Query 675 GCGTCCGGAGACAACACCGCACTGACCGATCT-ATCGACCTCAGCCCCATCTATAGACAT 733
| |||| |||| || ||| ||||| |||||| | | |||||||| |||| ||||||||
Sbjct 661 GGGTCCCAAGACTACCCCGGACTGATCGATCTTA-CAACCTCAGCAACATCCATAGACAT 719
Query 734 CACCGGGGCGTCT-AACAAGCCGCCAGAGATTGTTATGTCCAAGGCATTGTCAGGAGACG 792
|||||| |||| | ||||| |||||||||||||||||| | |||||| ||||||||||||
Sbjct 720 CACCGGAGCGT-TGAACAAACCGCCAGAGATTGTTATGACGAAGGCAATGTCAGGAGACG 778
Query 793 GCTTAATCA-TCTCCGACCTGCCTCTCCCCTC-A--ACTGCTAC-ACTGGTATATTTGGC 847
|||| | || | |||| |||| ||||||||| | || || | || |||||| || ||
Sbjct 779 GCTTTA-CAATGTCCGGCCTGAATCTCCCCTCTAGTACCCCT-CTACCGGTATACTTAGC 836
Query 848 TCTTTACTTCTCGGAGCCTCAGAGTCTAGGTCGGACCCAGAAACGATCGTTCAACGTTTT 907
|||||||||||| |||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct 837 TCTTTACTTCTCAGAGCCTCAGAGTCTAGGTCGGACCCAAAAACAATCGTTCACCGTTTT 896
Query 908 CTTGGACGACATGCAAGTGGGTTCACATCCCATCGTACCGGTTTTTGGGAAAGCGACTCA 967
|||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 897 CTTGGACGGCATGCAAGTGGGTTCACATCCCATAGTACCAGTTTTTGGGAAAGCGACTCA 956
Query 968 ACTCGTTTTGAGAGATGTAGA-GGCCACTTCGGGGTCCCAAATAGTCTTAAAGTCTACTG 1026
| ||||||| ||||||||| | ||| | ||||| |||||| |||| || ||||| || |
Sbjct 957 AGTCGTTTTAAGAGATGTA-ATGGCTAGTTCGGAGTCCCAGTTAGTTTTTAAGTCAACCG 1015
Query 1027 ATGACTCGG-TATTGCCGACCATGATCAATGGTTTGGAGCTATATTCCATAAGTAACAAT 1085
||||||||| | ||||||||||| |||| |||||||||| | ||||| ||||||||| |
Sbjct 1016 ATGACTCGGGT-TTGCCGACCATCATCAGTGGTTTGGAGGTTTATTCGATAAGTAACTA- 1073
Query 1086 CA-GCACGGTGGAAGCGGAGG 1105
|| | || |||||||||||||
Sbjct 1074 CAAGGACCGTGGAAGCGGAGG 1094
> Ahg897446 jgi|Araly1|897446|Al_scaffold_0005_1412
Length=1371
Score = 948 bits (513), Expect = 0.0
Identities = 867/1033 (84%), Gaps = 44/1033 (4%)
Strand=Plus/Plus
Query 96 AAAGGTATAAGCATTGACTGTGGAACAACGGGATCCTACGTGGACTCCAACAACGTAACA 155
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 59 AAA-GTATAAGCATTGACTGTGGAACAACGGGATCCTACGTGGACTCCAACAATGTAACA 117
Query 156 TGGGTCGGAGATAAGGGTTTCGTCACCACCGGCGAATCC-ATTAATATTACGGACGTCAC 214
|||||||||||||| || ||||||||||||||| || || || || | |||||||||
Sbjct 118 TGGGTCGGAGATAATGGCTTCGTCACCACCGGC-AAGCCCATGAACAATACGGACGTTGT 176
Query 215 CACAAAGCCGATCAATA-CTCTCCGGTATTTTCCAACCGGTCAAACAAACTGCTACACCA 273
||||||||| ||||| | | ||||| || || || |||||||||| |||||||||||||
Sbjct 177 CACAAAGCCAATCAACAAC-CTCCGATACTTCCCTTCCGGTCAAACCAACTGCTACACCA 235
Query 274 ATATTCCGGTGACAAAAGGCAGGAAAACCCTCGTGAGGACGAAGTACTACTACGAGAACT 333
| |||||||| || |||||| |||||| ||||||||||||||| || |||||||||||||
Sbjct 236 ACATTCCGGTAACCAAAGGCCGGAAAAACCTCGTGAGGACGAAATATTACTACGAGAACT 295
Query 334 ACGATGACAAGTT-CTCGCCGCCATCTTTCGACAT-AGTTTATGACGGGAAACACCGTGA 391
|||| | || || ||||||||||||||| ||| | | |||| || || |||||||||||
Sbjct 296 ACGACGGGAA-TTACTCGCCGCCATCTTTTGACGTGA-TTTACGATGGAAAACACCGTGA 353
Query 392 TTCTGTTGATATTACTGAGTCGTTACTCGACGACGAGGACACATTTTATTTCTCTGAGGT 451
|||| |||| ||||||||||| | || |||||||||| | || |||||||| ||| |
Sbjct 354 TTCTATTGAAATTACTGAGTCATCGGTCAACGACGAGGAGAGGTTCTATTTCTCGGAGTT 413
Query 452 GATTTTTGCTCCGGCGAGTGAGAATATCAGCGTTTGCCTTCT-CCGTACGTCTCCGTCCG 510
||| ||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct 414 GATATTTGCTCCGGCGAATGAGAATATCAGCGTTTGC-TTCTTCCGTACGTCTCCGTCCC 472
Query 511 ATAACCCTTTTATATCTTCCATTGAAGTTTACAGCTTCGATGAC-GGCATGTACAAAGAT 569
||||||||||||| ||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 473 ATAACCCTTTTATTTCTTCCATTGAAGTTTACAGCTTCGAT-ACCGGCATGTACGCCGAT 531
Query 570 CTTGGTCCTGAA-GAAGGTCTCATTCT-CTATCAAAGA-ATTACGTACGGAGCCAAAAAG 626
|||||||| || |||||||||||||| | | ||||| || || || || || || ||
Sbjct 532 CTTGGTCCC-AACGAAGGTCTCATTCTTCAAG-AAAGATAT-ACCTATGGTGCTGAAGAG 588
Query 627 -CTTATAAGCTATCCGTTAGATCCTT-TCGGTAGGCTATGGTCT-CCGTCAGCGT-CCGG 682
|| |||||||| ||| |||| |||| | ||||||||||||| | ||||||| || |||
Sbjct 589 TCT-ATAAGCTACCCGCTAGACCCTTAT-GGTAGGCTATGGT-TACCGTCAG-GTTCCGA 644
Query 683 AGACAA-CACCGCACTGACCGATCT-ATCGACCTCAGCCCCATCTATAGACATCACCGGG 740
| ||| | | ||||||| ||||| | ||||||||| ||||| |||||||||||||||
Sbjct 645 ATACAGTCTCT-CACTGACGGATCTCAA-GACCTCAGCTCCATCAATAGACATCACCGGG 702
Query 741 G-CGTCTAACAAGCCGCCAGAGATTGTTATGTCCAAGGCATTGTCAGGAGACGGCTTAAT 799
| | ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 703 GTC-TCTAACAAGCCACCAGAGATTGTTATGTCAAAGGCATTGTCAGGAGATAGCTTAAT 761
Query 800 -CATCTCCGACCTGCCTCT---CCCCTCAACTG--CTACACTGGTATATTTGGCTCTTTA 853
| ||||| || || ||| ||||| ||| | |||| | ||||||||| ||||||||
Sbjct 762 AC-TCTCCAACATGGGTCTGATCCCCTTAACCGGTCTAC-C-GGTATATTTAGCTCTTTA 818
Query 854 CTTCTCGGAGCCTCAGAGTCTAGGTCGGACCCAGAAACGATCGTTCAACGTTTTCTTGGA 913
||||| |||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 819 TTTCTCTGAGCCTCAGAGTCTAGGTCGGACCCAGAGGCGGTCGTTCAACGTTTTTTTGGA 878
Query 914 CGACATGCAAGTGGGTTCACATCCCATCGTACCGGTTTTTGGGAAAGCGACTCAACTCGT 973
|||| |||||||||||| ||||||||| ||||||||||| ||||| |||||| || |
Sbjct 879 TGACACAAAAGTGGGTTCACGTCCCATCGTCCCGGTTTTTGGAAAAGCTACTCAAGTCAT 938
Query 974 TTTGAGAGATGTAGAGGCCACTTCGGGGTCCCAAATAGTCTTAAAGTCTACTGATGACTC 1033
|||||||||||||| |||||| || || || || |||||||| |||| || ||||| ||
Sbjct 939 TTTGAGAGATGTAGTGGCCACCTCCGGATCTCAGATAGTCTTTCAGTCAACCGATGATTC 998
Query 1034 GGTAT-TGCCGACCATGATCAATGGTTTGGAGCTATATTCCATAAGTAACAATCAGCACG 1092
||| | ||||| |||| ||||||||||||||||| ||||| |||||||||| | | | |
Sbjct 999 GGT-TCTGCCGCCCATCATCAATGGTTTGGAGCTCTATTCGATAAGTAACAGCCGGGATG 1057
Query 1093 GTGGAAGCGGAGG 1105
||||| |||||||
Sbjct 1058 GTGGAGGCGGAGG 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62734633515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5