BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46280.1
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897444 jgi|Araly1|897444|Al_scaffold_0005_1410 1064 0.0
Ahg897446 jgi|Araly1|897446|Al_scaffold_0005_1412 1014 0.0
Ahg897445 jgi|Araly1|897445|Al_scaffold_0005_1411 852 0.0
> Ahg897444 jgi|Araly1|897444|Al_scaffold_0005_1410
Length=1398
Score = 1064 bits (576), Expect = 0.0
Identities = 860/997 (86%), Gaps = 20/997 (2%)
Strand=Plus/Plus
Query 85 GTATAAGCATCGACTGTGGATCAACCGGATCTTACGTGGACTCCAACAATGTAACATGGG 144
|||||||||| ||||||||| |||| ||||| ||||||||||||||||| ||||||||||
Sbjct 86 GTATAAGCATTGACTGTGGAACAACGGGATCCTACGTGGACTCCAACAACGTAACATGGG 145
Query 145 TCGGAGATAAAGGCTTCGTCACCAACGGCGAGCCCATGAAGATTCCGGACGTTGTCAAAA 204
|||||||||| ||||| ||||||| |||||| |||| || ||| ||||||| || ||
Sbjct 146 TCGGAGATAATGGCTTTGTCACCACCGGCGAATCCATTAATATTACGGACGTCACCACAA 205
Query 205 AGCCAATCAACACTCTCCGGTACTTCCCAACTGGTCAAACCAACTGCTACACCAACATTC 264
|||| ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||
Sbjct 206 AGCCGATCAACACTCTCCGGTATTTTCCAACCGGTCAAACAAACTGCTACACCAACATTC 265
Query 265 CGGTGACAAAAGGCCAGAAAACCCTCGTGAGGACGAAGTTTTACTATGAGAACTACGACG 324
||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 266 CGGCGACAAAAGACCAGAAAACCCTTGTGAGGACGAAGTTTTACTATGAGAACTATGACG 325
Query 325 -CGAAGTTCTCGCCGCCATCTTTTGATGT-GATTTATGACGGGAAACACCGTGATTCTAT 382
| ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 326 AC-AAGTTCTCGCCGCCATCTTTTGACATAG-TTTATGACGGGAAACACCGTGATTCTAT 383
Query 383 TGTAATTACCGAGTCGTTGCTAAATGATGAAGAAACGTTCTATTTCTCGGAGGTGATATA 442
|| |||||| || || || || || || || || || ||||||||||| ||||||||||
Sbjct 384 TGAAATTACTGAATCATTACTCAACGACGAGGACACATTCTATTTCTCTGAGGTGATATT 443
Query 443 TGTTCCGGAGAATAAGAATATCAGCGTCTGTCTCTTACGTACGTCTCCGTCCGACAACCC 502
|| ||||| |||| ||||||||||||| || ||| | ||||| ||||||||||| |||||
Sbjct 444 TGCTCCGGCGAATGAGAATATCAGCGTTTGCCTCCTCCGTACTTCTCCGTCCGATAACCC 503
Query 503 ATTTATATCGTCCATTGAAGTTTATAGTTTGGACACTGGCATGTACGACGATCTTGGTCC 562
|||||||| |||||||||||||| || || || | ||||||||||| ||| |||||||
Sbjct 504 TTTTATATCTTCCATTGAAGTTTACAGCTTCGATGCCGGCATGTACGAAGATGTTGGTCC 563
Query 563 T-AACGAAGGTCTCATTCTCCACGACAGAATTGCATACGGTGCCAAAGAGCTTATAAGCT 621
| || ||||||||||||||| | || |||||| | |||||||||||| ||||||||||||
Sbjct 564 TGAA-GAAGGTCTCATTCTCTATGAAAGAATTACGTACGGTGCCAAAAAGCTTATAAGCT 622
Query 622 ACCCGTTAGACCCCTACGGTAGGGTATGGT-TAGCGTTAGGATCCCAAGACTCCAC---A 677
|||||||||| || ||||||||| |||||| | ||| ||| ||| ||||| ||| |
Sbjct 623 ACCCGTTAGATCCTTACGGTAGGCTATGGTCTC-CGTCAGGGTCCGAAGACAACACCGCA 681
Query 678 CTGACCGATCTAACGACCTCAGCCCCATCAATAGACATCACCGGGGCGTCGAACAAGCCA 737
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 682 CTGACCGATCTAACAACCTCAGCCCCATCGATAGACATCACCGGGGCGTCAAACAAGCCG 741
Query 738 CCAGAGATTGTTATGTCAAAGGCATTATCAGGAG-TCGGCTTAGT-ACTCTCAGACCAGA 795
||||||||||||||||| |||||||| ||||||| | |||||| | | |||| | || |
Sbjct 742 CCAGAGATTGTTATGTCGAAGGCATTGTCAGGAGAT-GGCTTAATCA-TCTCCGGCCTGC 799
Query 796 CTCTACCCCT-AACCGGAGTACCAGTATACTTGGTTCTTTACTTCTCAGAGCCTCAAAGT 854
|||| ||||| ||| | ||| |||||||||| |||||||||||| |||||||| |||
Sbjct 800 CTCT-CCCCTCAACTGCTGTATTGGTATACTTGGCTCTTTACTTCTCGGAGCCTCAGAGT 858
Query 855 CTAGGTCGAACCCAGAGACGATCGTTCAACGTTTTCTTGGACAACACT-CAAGTGGGTTC 913
|||||||| ||||||| ||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 859 CTAGGTCGGACCCAGAAACGATCGTTCAACATTTTCTTGGACAACA-TGCAAGTGGGTTC 917
Query 914 GCGTCCCATCGTACCGGTTTTTGGGAAAGCAACTCAATTCATTTTGAGAGATGTAGTGGC 973
| ||||||||||||||||||||||||||| |||||| || ||||||||||||||| |||
Sbjct 918 ACATCCCATCGTACCGGTTTTTGGGAAAGCTACTCAACTCGTTTTGAGAGATGTAGAGGC 977
Query 974 CACATCGGCGTCCCAGATAGTCTTTCAGTCAACGGATGACTCCGTTTTGCCACCCCTCAT 1033
||| |||| |||||||||||||||| |||| ||||||||||| ||||||||| || ||||
Sbjct 978 CACTTCGGAGTCCCAGATAGTCTTTAAGTCTACGGATGACTCGGTTTTGCCAACCATCAT 1037
Query 1034 CAACGGATTGGAGCTGTACTCGATAAGTAATA-CCAG 1069
||| || |||||||| || || |||||||| | ||||
Sbjct 1038 CAATGGTTTGGAGCTATATTCAATAAGTAACAACCAG 1074
> Ahg897446 jgi|Araly1|897446|Al_scaffold_0005_1412
Length=1371
Score = 1014 bits (549), Expect = 0.0
Identities = 855/1001 (85%), Gaps = 28/1001 (3%)
Strand=Plus/Plus
Query 80 AGAAAGTATAAGCATCGACTGTGGATCAACCGGATCTTACGTGGACTCCAACAATGTAAC 139
||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 57 AGAAAGTATAAGCATTGACTGTGGAACAACGGGATCCTACGTGGACTCCAACAATGTAAC 116
Query 140 ATGGGTCGGAGATAAAGGCTTCGTCACCAACGGCGAGCCCATGAAGATTCCGGACGTTGT 199
||||||||||||||| ||||||||||||| |||| |||||||||| | | ||||||||||
Sbjct 117 ATGGGTCGGAGATAATGGCTTCGTCACCACCGGCAAGCCCATGAACAATACGGACGTTGT 176
Query 200 CAAAAAGCCAATCAACA-CTCTCCGGTACTTCCCAACTGGTCAAACCAACTGCTACACCA 258
|| |||||||||||||| | ||||| |||||||| | ||||||||||||||||||||||
Sbjct 177 CACAAAGCCAATCAACAAC-CTCCGATACTTCCCTTCCGGTCAAACCAACTGCTACACCA 235
Query 259 ACATTCCGGTGACAAAAGGCCAGAAAACCCTCGTGAGGACGAAGTTTTACTATGAGAACT 318
|||||||||| || ||||||| ||||| ||||||||||||||| | |||||| |||||||
Sbjct 236 ACATTCCGGTAACCAAAGGCCGGAAAAACCTCGTGAGGACGAAATATTACTACGAGAACT 295
Query 319 ACGACGCGAAGTT-CTCGCCGCCATCTTTTGATGTGATTTATGACGGGAAACACCGTGAT 377
|||||| ||| || |||||||||||||||||| |||||||| || || ||||||||||||
Sbjct 296 ACGACGGGAA-TTACTCGCCGCCATCTTTTGACGTGATTTACGATGGAAAACACCGTGAT 354
Query 378 TCTATTGTAATTACCGAGTCGTTGCTAAATGATGAAGAAACGTTCTATTTCTCGGAGGTG 437
||||||| |||||| ||||| | | | || || || || | |||||||||||||||| ||
Sbjct 355 TCTATTGAAATTACTGAGTCATCGGTCAACGACGAGGAGAGGTTCTATTTCTCGGAGTTG 414
Query 438 ATATATGTTCCGGAGAATAAGAATATCAGCGTCTGTCT-CTTACGTACGTCTCCGTCCGA 496
|||| || ||||| |||| ||||||||||||| || || ||| ||||||||||||||| |
Sbjct 415 ATATTTGCTCCGGCGAATGAGAATATCAGCGTTTG-CTTCTTCCGTACGTCTCCGTCCCA 473
Query 497 CAACCCATTTATATCGTCCATTGAAGTTTATAGTTTGGACACTGGCATGTACGACGATCT 556
||||| ||||| || |||||||||||||| || || || || |||||||||| ||||||
Sbjct 474 TAACCCTTTTATTTCTTCCATTGAAGTTTACAGCTTCGATACCGGCATGTACGCCGATCT 533
Query 557 TGGTCCTAACGAAGGTCTCATTCTCCACGACAGA-ATTGCATACGGTGCCAAAGAG-CTT 614
|||||| ||||||||||||||||| || || ||| || | || ||||| ||||| ||
Sbjct 534 TGGTCCCAACGAAGGTCTCATTCTTCAAGAAAGATATACC-TATGGTGCTGAAGAGTCT- 591
Query 615 ATAAGCTACCCGTTAGACCCCTACGGTAGGGTATGGTTAGCGTTAGGATCCCAAGAC--T 672
|||||||||||| ||||||| || |||||| |||||||| ||| ||| ||| || || |
Sbjct 592 ATAAGCTACCCGCTAGACCCTTATGGTAGGCTATGGTTACCGTCAGGTTCCGAATACAGT 651
Query 673 C-CACACTGACCGATCT-AACGACCTCAGCCCCATCAATAGACATCACCGGGG-CGTCGA 729
| | ||||||| ||||| || ||||||||| |||||||||||||||||||||| | || |
Sbjct 652 CTCTCACTGACGGATCTCAA-GACCTCAGCTCCATCAATAGACATCACCGGGGTC-TCTA 709
Query 730 ACAAGCCACCAGAGATTGTTATGTCAAAGGCATTATCAGGAG-TCGGCTTAGTACTCTC- 787
|||||||||||||||||||||||||||||||||| ||||||| | | |||| |||||||
Sbjct 710 ACAAGCCACCAGAGATTGTTATGTCAAAGGCATTGTCAGGAGATAG-CTTAATACTCTCC 768
Query 788 AGACCA-GACTCT-A-CCCCT-AACCGGAGTACCAGTATACTTGGTTCTTTACTTCTCAG 843
| || | | ||| | ||||| |||||| |||| ||||| || | |||||| ||||| |
Sbjct 769 A-AC-ATGGGTCTGATCCCCTTAACCGGTCTACCGGTATATTTAGCTCTTTATTTCTCTG 826
Query 844 AGCCTCAAAGTCTAGGTCGAACCCAGAGACGATCGTTCAACGTTTTCTTGGACAACACTC 903
||||||| ||||||||||| |||||||| || |||||||||||||| ||||| ||||
Sbjct 827 AGCCTCAGAGTCTAGGTCGGACCCAGAGGCGGTCGTTCAACGTTTTTTTGGATGACACAA 886
Query 904 AAGTGGGTTCGCGTCCCATCGTACCGGTTTTTGGGAAAGCAACTCAATTCATTTTGAGAG 963
|||||||||| ||||||||||| ||||||||||| ||||| |||||| ||||||||||||
Sbjct 887 AAGTGGGTTCACGTCCCATCGTCCCGGTTTTTGGAAAAGCTACTCAAGTCATTTTGAGAG 946
Query 964 ATGTAGTGGCCACATC-GGCGTCCCAGATAGTCTTTCAGTCAACGGATGACTCCGTTTTG 1022
||||||||||||| || || || |||||||||||||||||||| ||||| || ||| ||
Sbjct 947 ATGTAGTGGCCACCTCCGGA-TCTCAGATAGTCTTTCAGTCAACCGATGATTCGGTTCTG 1005
Query 1023 CCACCCCTCATCAACGGATTGGAGCTGTACTCGATAAGTAA 1063
|| ||| ||||||| || |||||||| || |||||||||||
Sbjct 1006 CCGCCCATCATCAATGGTTTGGAGCTCTATTCGATAAGTAA 1046
> Ahg897445 jgi|Araly1|897445|Al_scaffold_0005_1411
Length=1152
Score = 852 bits (461), Expect = 0.0
Identities = 861/1053 (82%), Gaps = 32/1053 (3%)
Strand=Plus/Plus
Query 80 AGAAAGTATAAGCATCGACTGTGGATCAACCGGATCTTACGTGGACTCCAACAATGTAAC 139
|||| |||||||||| ||||||||| |||| || || |||||||||||||||||||||||
Sbjct 78 AGAAGGTATAAGCATTGACTGTGGAACAACGGGTTCCTACGTGGACTCCAACAATGTAAC 137
Query 140 ATGGGTCGGAGATAAAGGCTTCGTCACCAACGGCGAGCCCATGAAGATTC-CGGACGTTG 198
||||||||||||||| |||||||| |||| |||||| |||| || || | ||||||| |
Sbjct 138 ATGGGTCGGAGATAATGGCTTCGTTACCACCGGCGAATCCATTAATAT-CACGGACGTCG 196
Query 199 TCAA-AAAGCCAATCAACACTCTCCGGTACTTCCCAACTGGTCAAACCAACTGCTACACC 257
| || ||| || ||||| || ||||||||||| ||||| |||||||| || |||||||||
Sbjct 197 TAAATAAA-CCGATCAATACCCTCCGGTACTTTCCAACCGGTCAAACTAATTGCTACACC 255
Query 258 AACATTCCGGTGACAAAAGGCCAGAAAACCCTCGTGAGGACGAAGTTTTACTATGAGAAC 317
|||||||||| ||||||||||| ||| ||||| ||||||||||| |||||||| | |||
Sbjct 256 AACATTCCGGCGACAAAAGGCCGGAACACCCTTGTGAGGACGAAATTTTACTACAAAAAC 315
Query 318 TACGACGCGAAGTT-CTCGCCGCCATCTTTTGATGTGATTTATGACGGGAAACACCGTGA 376
||||||| ||| || |||||| |||||||| || ||| |||| || ||||||||||||||
Sbjct 316 TACGACGAGAA-TTACTCGCCACCATCTTTCGACGTGGTTTACGATGGGAAACACCGTGA 374
Query 377 TTCTATTGTAATTAC--C-GAGTCGTTGCTAAATGATGAAGAAACGTTCTATTTCTCGGA 433
|||||||| ||||| | || |||||| | | || || ||| | ||| ||| ||| ||
Sbjct 375 TTCTATTGCGATTACAGCTGACTCGTTGTTCAGCGACGAGGAATCATTCCATTACTCTGA 434
Query 434 GGTGATATATGTTCCGGAGAATAAGAATATCAGCGTCTGTCTCTTACGTACGTCTCCGTC 493
|||||||| || ||||| |||| ||||||||||||| || ||| ||||||||||||||
Sbjct 435 GGTGATATTTGCTCCGGCGAATGAGAATATCAGCGTTTGCCTCACCCGTACGTCTCCGTC 494
Query 494 CGACAACCCATTTATATCGTCCATTGAAGTTTAT-AGTTTGGACACTGGCATGTACGACG 552
||| ||||| |||||||| |||||||||||||| | || | | | |||||||| ||||
Sbjct 495 CGATAACCCTTTTATATCTTCCATTGAAGTTTACCACTTCG-ATGCCGGCATGTATGACG 553
Query 553 ATCTTGGTCCT-AACGAAGGTCTCATTCTCCACGACAGAATTGCATACGGTGCCA-AAGA 610
||||||||||| || ||||||||||||||| | | |||| ||| |||||||||| || |
Sbjct 554 ATCTTGGTCCTGAA-GAAGGTCTCATTCTCTATAAAAGAAATGCGTACGGTGCCACAA-A 611
Query 611 GCTTATAAGCTACCCGTTAGACCCCTACGGTAGGGTATGGTTAGCGTTAGGATCCCAAGA 670
||||||||||||||||||||| || ||| ||||| ||||||| | ||| ||||||||
Sbjct 612 GCTTATAAGCTACCCGTTAGATCCTTACAGTAGGCTATGGTTCCCAAAAGGGTCCCAAGA 671
Query 671 CT-CCAC--ACTGACCGATCTAACGACCTCAGCCCCATCAATAGACATCACCGGGGCGTC 727
|| || | ||||| |||||| || |||||||| |||| |||||||||||||| ||||
Sbjct 672 CTACCCCGGACTGATCGATCTTACAACCTCAGCAACATCCATAGACATCACCGGAGCGTT 731
Query 728 GAACAAGCCACCAGAGATTGTTATGTCAAAGGCATTATCAGGAGTCGGCTT-AGTACTCT 786
|||||| || ||||||||||||||| | |||||| | ||||||| |||||| | | | |
Sbjct 732 GAACAAACCGCCAGAGATTGTTATGACGAAGGCAATGTCAGGAGACGGCTTTACAA-TGT 790
Query 787 CAGACCAGACTCTACCC-CTA--ACCGGAGTACCAGTATACTTGGTTCTTTACTTCTCAG 843
| | || || ||| ||| ||| ||| |||| |||||||| | ||||||||||||||
Sbjct 791 CCGGCCTGAATCTCCCCTCTAGTACCCCTCTACCGGTATACTTAGCTCTTTACTTCTCAG 850
Query 844 AGCCTCAAAGTCTAGGTCGAACCCAGAGACGATCGTTCAACGTTTTCTTGGACAACACT- 902
||||||| ||||||||||| ||||| | || |||||||| ||||||||||||| || |
Sbjct 851 AGCCTCAGAGTCTAGGTCGGACCCAAAAACAATCGTTCACCGTTTTCTTGGACGGCA-TG 909
Query 903 CAAGTGGGTTCGCGTCCCATCGTACCGGTTTTTGGGAAAGCAACTCAATTCATTTTGAGA 962
||||||||||| | |||||| ||||| |||||||||||||| |||||| || |||| |||
Sbjct 910 CAAGTGGGTTCACATCCCATAGTACCAGTTTTTGGGAAAGCGACTCAAGTCGTTTTAAGA 969
Query 963 GATGTAGTGGCCACATCGGCGTCCCAGATAGTCTTTCAGTCAACGGATGACTCCGTTTTG 1022
|||||| |||| | |||| ||||||| |||| ||| ||||||| |||||||| | ||||
Sbjct 970 GATGTAATGGCTAGTTCGGAGTCCCAGTTAGTTTTTAAGTCAACCGATGACTCGGGTTTG 1029
Query 1023 CC-ACCCCTCATCAACGGATTGGAGCTGTACTCGATAAGTAA-TACCAGTCCAGACAGTG 1080
|| ||| |||||| || |||||| | || ||||||||||| ||| || ||| |||
Sbjct 1030 CCGACCA-TCATCAGTGGTTTGGAGGTTTATTCGATAAGTAACTACAAG----GACCGTG 1084
Query 1081 GAGGCGGCGGTGGAGACCAAGGCGGCGGTAGTA 1113
|| |||| || || | |||| ||||| ||||||
Sbjct 1085 GAAGCGGAGGCGGGGGCCAAAGCGGCAGTAGTA 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60677760285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5