BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46290.1
Length=3032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937338 jgi|Araly1|937338|scaffold_501529.1 3864 0.0
Ahg496102 jgi|Araly1|496102|fgenesh2_kg.8__1918__AT5G59700.1 1696 0.0
Ahg950891 jgi|Araly1|950891|scaffold_802778.1 185 1e-45
> Ahg937338 jgi|Araly1|937338|scaffold_501529.1
Length=2530
Score = 3864 bits (2092), Expect = 0.0
Identities = 2396/2542 (94%), Gaps = 23/2542 (1%)
Strand=Plus/Plus
Query 136 TTATTCTCTATTGGGTCAAAATGGGTATTGAAAAGTTT-GAAACTTTCATCTTGATTTCA 194
|||||||||||||||||||||||||||||||||||||| |||| ||||||| ||
Sbjct 1 TTATTCTCTATTGGGTCAAAATGGGTATTGAAAAGTTTGGAAA-TTTCATC-----TT-- 52
Query 195 ACGATTTCGATCTTGCTTTGTATCTGCCATGGATTCACACCTGTGGATAATTACTTGATC 254
||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 53 --GATTTCGATCTTGATTTGCATCTGCCATGGATTCACACCTCAAGATAATTACTTAATC 110
Query 255 AACTGTGGATCACCAACCAATGGAACACTAATGGGTCGAATCTTTCTGTCTGATAAGCTC 314
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 111 AACTGTGGATCACCAAGCAATGGAACACTAATGGGTCGAATCTTTATGTCTGATAAGCTC 170
Query 315 TCTTCGAAGTTACTTACTTCGT-CCAAAGAGATTCTCGCAAGCGTAGGCG---GTAACTC 370
|||||||| ||||||||||| | ||||||||||||||||||||| | ||| |||| |
Sbjct 171 TCTTCGAACTTACTTACTTC-TCCCAAAGAGATTCTCGCAAGCGAAAGCGTTAATAACGC 229
Query 371 TGGCTCAGACATTTACCACACGGCAAGAGTCTTCACCGAAGTCTCTAGCTACAAATTCTC 430
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 230 TGGCTCAGACATTTACCAAACGGCGAGAGTCTTCACCGAAGTCTCTAGCTACAAATTCTC 289
Query 431 GGTCACTCGTGGTCGTCATTGGGTTCGTCTCTATTTCAATCCTTTTGACTACCAAAACTT 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TATCACTCGTGGTCGTCATTGGGTTCGTCTCTATTTCAATCCTTTTGACTACCAAAACTT 349
Query 491 CAAAATGGGTTCAGCTAAATTCGCGGTTTCTTCACAAAGTCATGTCCTTTTGAGTGATTT 550
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 350 CAAAATGGGTTCAGCTAAATTCGCAGTTTCGTCACAAAGTCATGTCCTTTTGAGTGATTT 409
Query 551 CACTGTTACGAGTTCAAAAGTTGTCAAAGAGTACTCTTTGAACGTGACTACTAATGATTT 610
|| ||||| |||| | | |||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 410 CAATGTTAAGAGTACGAGAGTTGTTAAAGAGTACTCTTTGAATGTGACTACCAATGATTT 469
Query 611 AGTGCTCACCTTTACTCCCTCTAGTGGTTCGTTTGCGTTTGTGAATGCTATCGAGGTTAT 670
||||||||| ||||||||||| |||||||||||||||||||||| || |||||||||||
Sbjct 470 AGTGCTCACGTTTACTCCCTCGGGTGGTTCGTTTGCGTTTGTGAACGCGATCGAGGTTAT 529
Query 671 ATCGATTCCAGATACTTTGATTACTGGTAGTCCAAGGTTTGTAGGCAACCCTGCGCAGTT 730
||||||||| ||||| ||||| |||||||||||||||||| |||||||||||| ||||||
Sbjct 530 ATCGATTCCGGATACATTGATCACTGGTAGTCCAAGGTTTATAGGCAACCCTGTGCAGTT 589
Query 731 TCCGGATATGTCAATGCAAGGTCTTGAAACCATTCATAGAGTCAACATGGGTGGTCCGCT 790
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 590 TCCGGATATGTCAATGCAGGGTCTTGAAACCATTCATAGAGTGAACATGGGCGGTCCACT 649
Query 791 TGTTGCGTCTAACAACGATACG-TTAACGAGAACTTGGGTGCCTGACTCGGAGTTTCTGC 849
||||||| ||||||||||||| ||| ||||||||||||||||||| |||| ||||||||
Sbjct 650 TGTTGCGGCTAACAACGATACTCTTA-CGAGAACTTGGGTGCCTGATTCGGGGTTTCTGC 708
Query 850 TTGAGAAGAATTTAGCTAAGAGTATGTCTAAGTTTTCAACTGTTAACTTTGTTCCAGGTT 909
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 709 TTGAGAAGAATTTAGCTAAGACTGTGTCTAAGTTTTCAACTGTTAACTTTGTTCCAGGTT 768
Query 910 ATGCAACAGAGGACTCTGCTCCAAGAACTGTCTATGGTAGTTGTACTGAGATGAATTCCG 969
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 769 ATGCAACAGAGGACTCTGCGCCAAGAACCGTATATGGTAGTTGTACTGAGATGAATTCCG 828
Query 970 CTGATAACCCGAATAGCATTTTCAATGTGACTTGGGAGTTCGATGTTGACCCGGGTTTTC 1029
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 829 CGGATAACCCGAATAGCATTTTCAATGTCACTTGGGAGTTCGATGTTGAGCCGGGTTTTC 888
Query 1030 AGTACTATTTCCGCTTTCATTTCTGCGATATCGTTAGCTTGTCGTTAAACCAGCTATATT 1089
|||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 889 AGTACTATTTCCGCTTCCACTTCTGCGATATTGTTAGCTTGTCTTTAAACCAGCTATATT 948
Query 1090 TCAATCTTTATGTTGACTCAATGGTTGCTGCTACGGATATTGATCTTAGCACTCTTGTGG 1149
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 949 TCAATCTTTATGTTGACTCGATGGTCGCTGCTACGGATATTGATCTTAGCACTCTTGTGG 1008
Query 1150 ATAACACTTTGGCTGGTGCATATTCGATGGACTTTGTCACGCAGACGCCAAAGGGTAGTA 1209
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1009 ATAACACTTTGGCTGGTGCATACTCGATGGACTTTGTCACGCAGACTCCAAAGGGTAGTA 1068
Query 1210 ATAAAGTCCGTGTGAGCATCGGTCCGTCGACTGTTCACACCGATTATCCAAACGCGATTG 1269
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 ATAAAATCCGTGTGAGCATTGGTCCGTCGACTGTTCACACCGATTATCCAAACGCGATTG 1128
Query 1270 TGAATGGATTGGAGATTATGAAGATGAATAACTCTAAGGGTCAGTTAAGCACTGGGACAT 1329
|||| ||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 1129 TGAACGGATTGGAGATCATGAAGATGAATAACTCTAAGGGTCAGCTAAGCACCGGGTCAT 1188
Query 1330 TTGTGCCTGGTAGTAGTTCAAGCAGTAAG-AG--TAATCTCGGGTTGATTGTAGGTTCAG 1386
||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||
Sbjct 1189 TTGTGCCTGGTAGTAGTTCAAGCAGTAAGCAGAGTAATATCGGGATGATTGTAGGTTCAG 1248
Query 1387 CCATTGGTTCGTTGCTCGCGGTAGTCTTCTTGGGAAGTTGCTTTGTGTTGTATAAGAAGC 1446
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1249 CCATTGGTTCGTTGCTCGCGGTTGTCTTCTTGGGAAGTTGCTTTGTGTTGTATAAGAAGC 1308
Query 1447 GGAAACGTGGCCAAGACGGTCATTCAAAGACTTGGATGCCGTTTTCGATAAATGGAACTT 1506
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1309 GGAAACGTGGCCAAGATGGTCATTCAAAGACTTGGATGCCGTTTTCAATAAACGGAACTT 1368
Query 1507 CGATGGGAAGCAAATACTCCAATGGAACTACGCTTACAAGTATAACTACCAATGCCAATT 1566
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1369 CGATGGGAAGCAAATACTCCAACGGAACTACGCTTACAAGTATAACTACCAATGCCAATT 1428
Query 1567 ACCGTATTCCCTTTGCAGCGGTTAAAGACGCTACAAATAACTTTGACGAGAGCCGCAACA 1626
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1429 ACCGTATTCCCTTTGCTGCGGTTAAAGACGCTACAAATAACTTTGACGAGAGTCGCAACA 1488
Query 1627 TCGGTGTAGGCGGTTTTGGTAAAGTCTACAAAGGAGAGCTTAATGACGGTACAAAGGTAG 1686
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 TCGGGGTGGGCGGTTTTGGTAAAGTCTACAAAGGAGAGCTTAATGACGGTACAAAGGTAG 1548
Query 1687 CTGTGAAAAGAGGGAACCCAAAATCTCAGCAAGGGCTTGCGGAATTCAGGACAGAAATCG 1746
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CTGTGAAAAGAGGAAACCCAAAATCTCAGCAAGGGCTTGCGGAATTCAGGACAGAAATCG 1608
Query 1747 AGATGTTATCTCAGTTTCGTCACCGCCATTTGGTTTCTCTGATCGGTTATTGTGACGAGA 1806
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1609 AGATGTTATCTCAGTTTCGTCACCGACATTTGGTCTCTCTGATCGGTTATTGTGACGAGA 1668
Query 1807 ACAATGAGATGATACTAATTTACGAGTATATGGAGAATGGAACGGTAAAGAGTCATCTTT 1866
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 ACAATGAGATGATACTGATTTACGAGTATATGGAGAATGGAACGGTAAAGAGTCATCTTT 1728
Query 1867 ATGGCTCAGGTCTACCTAGCTTGACTTGGAAACAACGGCTTGAGATCTGCATTGGTGCAG 1926
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1729 ATGGCTCAGGTCTTCCTAGCTTGACTTGGAAACAACGGCTTGAGATCTGCATTGGCGCGG 1788
Query 1927 CTAGAGGCTTGCATTACCTTCACACGGGTGACTCGAAACCGGTCATTCACAGAGACGTGA 1986
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 CTAGAGGATTGCATTACCTTCACACGGGTGACTCGAAACCGGTCATTCACAGAGACGTGA 1848
Query 1987 AATCTGCAAACATATTGCTTGACGAGAACTTCATGGCTAAAGTTGCAGACTTTGGACTGT 2046
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 AATCTGCAAACATATTACTCGACGAGAACTTCATGGCTAAAGTTGCAGACTTTGGACTGT 1908
Query 2047 CCAAGACTGGACCCGAGCTTGATCAGACTCATGTAAGTACTGCTGTCAAAGGAAGTTTTG 2106
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1909 CCAAGACTGGACCCGAGCTTGATCAAACTCATGTGAGTACTGCTGTCAAAGGAAGTTTTG 1968
Query 2107 GTTATCTTGACCCCGAGTACTTCAGAAGGCAACAGCTCACAGATAAATCCGATGTTTATT 2166
| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 1969 GATATCTTGACCCCGAGTACTTCAGAAGGCAACAGCTCACTGAGAAATCCGATGTTTACT 2028
Query 2167 CCTTCGGAGTTGTTCTCTTCGAGGTTTTATGTGCTAGACCTGTTATAGACCCAACACTTC 2226
||||||| |||||||| || |||||| | |||||||||||||||||||||||||||||||
Sbjct 2029 CCTTCGGGGTTGTTCTTTTTGAGGTTCTCTGTGCTAGACCTGTTATAGACCCAACACTTC 2088
Query 2227 CAAGAGAGATGGTGAATCTTGCAGAATGGGCTATGAAATGGCAGAAGAAAGGGCAACTGG 2286
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2089 CAAGAGAAATGGTGAATCTTGCAGAATGGGCTATGAAATGGCAGAAGAAAGGACAACTAG 2148
Query 2287 ATCAGATCATCGACCAGTCGCTTCGCGGAAATATCAGACCCGATTCGTTAAGGAAATTTG 2346
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2149 ATCAGATCATCGATCAGTCGCTTCGCGGAAATATCAGACCCGATTCTTTAAGGAAATTTG 2208
Query 2347 CGGAAACAGGTGAGAAATGTTTAGCGGATTATGGAGTTGATAGGCCATCTATGGGAGATG 2406
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2209 CAGAAACAGGTGAGAAATGTTTGGCGGATTACGGAGTTGATAGGCCATCTATGGGAGATG 2268
Query 2407 TGTTGTGGAATCTTGAATACGCTCTGCAGCTTCAAGAAGCAGTCATTGATGGTGAACCAG 2466
||||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||
Sbjct 2269 TGTTGTGGAATCTTGAATACGCTCTGCAGCTACAAGAAGCAGTCGTCGATGGCGAACCAG 2328
Query 2467 AAGATAATAGCACGAATATGATTGGTGAATTACCTCCGCAGATCAATAATTTCAGTCAGG 2526
||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 2329 AAGATAACAGCACGAATATGATCGGTGAATTACCTCCACAGATCAACAATTTCAGTCAGG 2388
Query 2527 GAGACACTAGTGTTAACGTTCCGGGCACAGCGGGGC-GATTCGAGGAATCTAGTATTGAT 2585
||||||| |||||||||||||| ||||||||||||| | ||||| ||||| || ||||||
Sbjct 2389 GAGACACAAGTGTTAACGTTCCAGGCACAGCGGGGCAG-TTCGAAGAATCGAGCATTGAT 2447
Query 2586 GATCTCTCTGGCGTTTCCATGAGTAAAGTATTCTCACAACTGGTGAAATCTGAAGGAAGA 2645
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2448 GATCTCTCTGGCGTTTCCATGAGTAAAGTATTCTCACAACTGGTGAAATCTGAGGGAAGA 2507
Query 2646 TAGTGAAAGATTTGAGCAATGC 2667
||||||||||||||||| ||||
Sbjct 2508 TAGTGAAAGATTTGAGCGATGC 2529
> Ahg496102 jgi|Araly1|496102|fgenesh2_kg.8__1918__AT5G59700.1
Length=2722
Score = 1696 bits (918), Expect = 0.0
Identities = 2022/2543 (80%), Gaps = 124/2543 (5%)
Strand=Plus/Plus
Query 156 ATGGGTATTGAAAAGTTTGAAACTTTCATCTT-GATTTCAACGATTTCGAT-CTTGCTTT 213
|||||| | ||||||||| | ||| || || ||||||||||||||| | ||| | |
Sbjct 92 ATGGGTGGTCAAAAGTTTGGATTTTTAAT-TTGGATTTCAACGATTTC-TTGCTTAATCT 149
Query 214 GTATCTGCCATGGATTCACACCTGTGGATAATTACTTGATCAACTGTGGATCACCAACCA 273
| |||||||||||| | ||||||| |||||||| | ||||||||||||||| ||||||
Sbjct 150 GCCTCTGCCATGGATACGTACCTGTGAATAATTACCTCATCAACTGTGGATCATCAACCA 209
Query 274 ATGGAACACT-AATGGGTCGAATCTTTC-TGTCTGATAAGCTCT-CTTCGAAGTTACTTA 330
| | || | | | ||||| | ||| | ||||||||||| | |||| || | || |
Sbjct 210 ACGTCACTGTCACT-AGTCGAGT-GTTCATCTCTGATAAGCT-TGCTTCAAACCTCCTAA 266
Query 331 CTTCGTCC-AAAGAGATTCTCG-C-AAGC--GTAGGCGGTAACTCTGGCTCAGACATTTA 385
| || ||| || || || |||| | || ||| | | || || ||||| |||||
Sbjct 267 CCTC-TCCTAATGAAATCCTCGCCGCCGCGAGTAATC-GCAATTCAAATTCAGATATTTA 324
Query 386 CCACACGGCAAGAGTCTTCACC-GAAGTCT-CTAGCTACAAATTCTCGGTCACTCGTGGT 443
||| ||||| ||| |||||||| ||| ||| | || |||| |||||| ||||| | ||
Sbjct 325 CCAGACGGCGAGAATCTTCACCGGAA-TCTCCAAG-TACAGATTCTCCATCACTAGAGGC 382
Query 444 CGTCATTGGGTTCGTCTCTATTTCAATCCTTTTGACTACCAAAACTTCAAAATGGGTTCA 503
|| || |||||||||||| |||||||||||||| | |||||||||||| || |||| |||
Sbjct 383 CGCCACTGGGTTCGTCTCCATTTCAATCCTTTTCAGTACCAAAACTTCCAATTGGGCTCA 442
Query 504 GCTAAATTCGCGGTTTCTTCACAAAGTCATGTCCTTTTGAGTGATTTCACTGTTACGAGT 563
|| |||||| | ||||||||||||| |||||||| |||||||||||||||| | || |
Sbjct 443 GCCAAATTCTCAGTTTCTTCACAAACACATGTCCTCTTGAGTGATTTCACTG-T--GAAT 499
Query 564 TCAAAAGTTGTCAAAGAGTACTCTTTGAACGTGA-CTACTAATGATTTAGTGCTCACCTT 622
|| | |||| | || ||||||||| |||| || | |||| || || | | |||||| ||
Sbjct 500 TCCAGAGTTATGAAGGAGTACTCTCTGAATGT-AGCTACGGATCATCTCGAGCTCACGTT 558
Query 623 TACTCCCTCTAGTGGTTCGTTTGCGTTTGTGAATGCTATCGAGGTTATATCGATTCCAGA 682
|||||||||| ||| ||||||||||||| |||| || |||||||| ||||| |||| ||
Sbjct 559 TACTCCCTCTGGTGATTCGTTTGCGTTTCTGAACGCGCTCGAGGTTGTATCGGTTCCTGA 618
Query 683 TACTTTGATTACTGGTAG-TCCAAGGTTTGTAGGCA-ACCCTGCGCAGTTTC-CGGATAT 739
||| ||||| | |||| | ||| |||||||||| ||| | | |||||| || | |
Sbjct 619 TACGTTGATCATTGGT-GATCCTTCATTTGTAGGCAGTCCC-GGGAAGTTTCAGGGCT-T 675
Query 740 GTCAATGCAAGGTCTTGAAACCATTCATAGAGTCAACATGGGTGGTCCGCTTGTTGCGTC 799
|||| |||||| | |||| || || ||||||| |||||||| ||||||| |||| || |
Sbjct 676 GTCATTGCAAGCTTTTGAGACGGTTTATAGAGTGAACATGGGCGGTCCGCGTGTTACGCC 735
Query 800 TAACAACGATACGT-TAACGAGAACTTGGGTGCCTGACTCGGAGTTTCT-GCTTGAGAAG 857
|| |||||||| | | |||||| ||||| ||||| || |||||| | | | ||||||
Sbjct 736 TAGTAACGATAC-TCTTTCGAGAATTTGGGAACCTGATTCTGAGTTTATAG-TGGAGAAG 793
Query 858 AATTTAGCTAAGAGTATGTCTAAGTTTTCAACTGTTAACTT-TGTTCCAGGTTATGCAAC 916
||| ||| ||||| | |||||||| || ||| |||| | || |||||| |||| ||| ||
Sbjct 794 AATCTAGTTAAGATTGTGTCTAAGATTGCAAGTGTTGA-TTATGTTCCCGGTTTTGCTAC 852
Query 917 AGAGGACTCTGCTCCAAGAACTGTCTATGGTAGTTGTACTGAGATGAATTCCGCTGATAA 976
|||||| |||| ||||||||||||||||||| ||| || |||||||||||||| ||| |
Sbjct 853 AGAGGAGACTGCCCCAAGAACTGTCTATGGTACTTGCACCGAGATGAATTCCGCAGATTA 912
Query 977 CCCGAATAGCATTTTCAATGTGACTTGGGAGTTCGATGTTGACCCGGGTTTTCAGTACTA 1036
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 913 CCCGACTAGCAAGTTCAATGTGACTTGGGATTTCGATGTTGACCCGGGTTTTCAGTACT- 971
Query 1037 TT-TCCGCTTTCATTTCTGCGATATCGTTAGCTTGTCG-T-TAAACCAGCTATATTTCAA 1093
|| | || ||||||||||||||||| || || | | | |||||||||| || |||||
Sbjct 972 TTCTACGGTTTCATTTCTGCGATATTGTGAG--TAAAGCTCTAAACCAGCTTTACTTCAA 1029
Query 1094 TCTTTATGTTGACTCAATGGTT-GCTGCT-ACGGATATTGATCTTAGCACTCTT-GTGGA 1150
||| ||||| ||||| || ||| | || | | | || | ||||| || ||||| | |
Sbjct 1030 TCTCTATGTCGACTCTAT-GTTGGTTGTTGA-GCATCTCGATCTAAG--CTCTTACT-TA 1084
Query 1151 T--AACACTTTG-GCTGGTGCATATTCGATGGACTTTGTCACGCAGA-C-GCCAAAGGGT 1205
| ||||||||| | ||||||||| |||||||| |||||||| | || | || ||| |
Sbjct 1085 TCCAACACTTTGAG-TGGTGCATACTCGATGGATTTTGTCAC-CGGATCAGCTAAACAG- 1141
Query 1206 AGTAATAA-AGTCCGTGTGAGCATCGGTCCGTCGACTGTTCACACCGATTATCCAAACGC 1264
| ||| || | ||||||||||||||||||| ||| ||||||||| ||||| || || ||
Sbjct 1142 ACTAA-AACAATCCGTGTGAGCATCGGTCCATCGGGTGTTCACACTGATTACCCTAATGC 1200
Query 1265 GATTGTGAATGGATTGGAGATTATGAAGATGAATAACTCTAAGGGTCAGTTAAG-CACTG 1323
|||| |||| ||||| ||||| ||||||||||||||||| || ||||| | || || |
Sbjct 1201 GATTCTGAACGGATTAGAGATCATGAAGATGAATAACTCCAAAAGTCAGCTCAGTAAC-G 1259
Query 1324 GGACATTTGTGCCTGGTAG-T--AGTTCAAGCAGTAAG-AGTAATCTCGGGT-TGATTGT 1378
|||||||| ||||| || | | ||||||| || ||| || ||| | ||| |||| ||
Sbjct 1260 GGACATTTTTGCCTAGTGGTTCAAGTTCAACCACCAAGAAG-AATGT-TGGTATGATCGT 1317
Query 1379 AGGT-TCAGCCATTGGTTCGTTGCTCGCGGTAGT-CTTCTTGGGAAGT-TGCTTTGTGTT 1435
||| | | | |||| || ||||| || |||| || || ||| || | |||| || |
Sbjct 1318 TGGTGT-AACGGTTGGCTCATTGCTTGCTTTAGTGGTT-TTAGGAGGTAT-CTTTTTGCT 1374
Query 1436 GTATAAGAAGCGGA-AACGTGGCCAAGACGGTCATTCAAAGACTTGGATGCCGTTTTCGA 1494
||| ||||| | || ||| | || || | ||||||||||||||||| ||||| ||
Sbjct 1375 GTACAAGAAAC-GAGGACGAGACCCGGATGACCATTCAAAGACTTGGATTCCGTTGTC-T 1432
Query 1495 T-AAATGGAACTTCGATGGGAAGCAAATACTCCAATGGAACTACGCTTACAAGTATAA-C 1552
| |||||||| | | | || ||| ||||||||||| || |||||| || |
Sbjct 1433 TCCAATGGAACAAC--T-----TC--ATCCTCAAATGGAACTACAATTGCAAGTA-AAGC 1482
Query 1553 TACCAATGCCAATTACCGTATTCCCTTT-GCAGCGGTTAAAGACGCTACAAATAACTTTG 1611
| ||||| ||| ||| || ||| ||||| ||||| || ||||| || ||||||| |||||
Sbjct 1483 TTCCAATTCCAGTTATCGAATT-CCTTTGGCAGCAGTCAAAGAGGCCACAAATAGCTTTG 1541
Query 1612 ACGAGAGCCGCAAC-ATCGGTGTAGGCGGTTTTGGTAAAGTCTACAAAGGAGAGCTTAAT 1670
|||||| | | | | || || || || |||||||||||||| ||||||||||||||| |
Sbjct 1542 ACGAGAACAG-AGCAATTGGCGTTGGTGGTTTTGGTAAAGTGTACAAAGGAGAGCTTCAC 1600
Query 1671 GACGGTACAAAGGTAGCTGTGAAAAGAGGGAACCCAAAATCTCAGCAAGGGCTTGCGGAA 1730
||||||||||| |||||||| ||||||| ||| || || ||||||||||| ||||| ||
Sbjct 1601 GACGGTACAAAAGTAGCTGTTAAAAGAGCGAATCCTAAGTCTCAGCAAGGACTTGCAGAG 1660
Query 1731 TTCAGGACAGAAATCGAGATGTTATCTCAGTTTCGTCACCGCCATTTGGTTTCTCTGATC 1790
||||||||||||||||| ||| | ||||| |||||||||||||| |||||||||||||||
Sbjct 1661 TTCAGGACAGAAATCGAAATGCTGTCTCAATTTCGTCACCGCCACTTGGTTTCTCTGATC 1720
Query 1791 GGTTATTGTGACGAGAACAATGAGATGATACTAATTTACGAGTATATGGAGAATGGAACG 1850
||||| || || ||||| || |||||||| || |||||||| ||||||||||| |||||
Sbjct 1721 GGTTACTGCGATGAGAATAACGAGATGATTCTCATTTACGAATATATGGAGAACGGAACA 1780
Query 1851 GTAAAGAGTCATCTTTATGGCTCAGGTCTACCTAGCTTGACTTGGAAACAACGGCTTGAG 1910
| |||||||| ||||| ||||||| ||| |||||||| | |||||| ||||||||||||
Sbjct 1781 TTGAAGAGTCACCTTTACGGCTCAGATCTTCCTAGCTTAAGTTGGAAGCAACGGCTTGAG 1840
Query 1911 ATCTGCATTGG-TGCAGCTAGAGGCTTGCATTACCTTCACACGGGTGACTCGAAACCGGT 1969
|| |||||||| | |||| ||||| |||||||| || || || |||||| ||||||| ||
Sbjct 1841 ATATGCATTGGAT-CAGCAAGAGGATTGCATTATCTCCATACCGGTGACGCGAAACCCGT 1899
Query 1970 CATTCACAGAGACGTGAAATCTGCAAACATATTGCTTGACGAGAACT-TCATGGCTAAAG 2028
|||||||||||||||||||| || |||||||| || |||||||| | ||||||||||||
Sbjct 1900 GATTCACAGAGACGTGAAATCCGCCAACATATTACTCGACGAGAA-TCTCATGGCTAAAG 1958
Query 2029 TTGCAGACTTTGGACTGTCCAAGACTGGACCCGAGCTTGATCAGACTCATGTAAGTACTG 2088
||||||||||||||||||| ||||| ||||||||| | |||||||||||||| ||||| |
Sbjct 1959 TTGCAGACTTTGGACTGTCTAAGACCGGACCCGAGATCGATCAGACTCATGTGAGTACCG 2018
Query 2089 CTGTCAAAGGAAGTTTTGGTTATCTTGACCCCGAGTACTTCAGAAGGCAACAGCTCACAG 2148
| |||||||||||||| || |||||||| || || ||||||||||| |||||||||||||
Sbjct 2019 CGGTCAAAGGAAGTTTCGGATATCTTGATCCGGAATACTTCAGAAGACAACAGCTCACAG 2078
Query 2149 ATAAATCCGATGTTTATTCCTTCGGAGTTGTTCTCTTCGAGGTTTTATGTGCTAGACCTG 2208
| ||||| |||||||| || || ||||| ||| | ||||||||| | || || ||||| |
Sbjct 2079 AGAAATCAGATGTTTACTCTTTTGGAGTGGTTATGTTCGAGGTTCTCTGCGCGAGACCGG 2138
Query 2209 TTATAGACCCAACACTTCCA-AGAGAGATGGTGAATCTTGCAGAATGGGCTATGAAATGG 2267
|||||||||| |||||| | ||||||||||||||||| || |||||||| |||||||||
Sbjct 2139 TTATAGACCCGACACTTA-ATAGAGAGATGGTGAATCTAGCGGAATGGGCGATGAAATGG 2197
Query 2268 CAGAAGAAAGGGCAACTGGATCAGATCATCGA-CCAGTCGCTTCGCGG-AAATATCAGAC 2325
||||||||||| || || || || ||||| || ||| || || || || ||| |||||||
Sbjct 2198 CAGAAGAAAGGACATCTTGAACATATCATTGATCCA-TCACTGCGAGGTAAA-ATCAGAC 2255
Query 2326 CCGATTCGTTAAGGAAA-TTTGCG-GAAACAGGTGAGAAATGTTTAGCGGATTATGGAGT 2383
| |||||| |||| ||| |||| | |||||||| |||||||||||||| |||||||||||
Sbjct 2256 CTGATTCGCTAAG-AAAGTTTG-GTGAAACAGGGGAGAAATGTTTAGCTGATTATGGAGT 2313
Query 2384 TGATAGGCCATCTATGGGAGATGTGTTGTGGAATCTTGAATACGCTCTGCAGCTTCAAGA 2443
|||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 2314 TGATAGACCATCAATGGGAGATGTGTTGTGGAATCTTGAATATGCTTTGCAGCTACAAGA 2373
Query 2444 AGCAGTCATTGATGGTGAACCAGAAGATAATAGCACGAATATGATTGGTGAATTACCTCC 2503
|||||||||||||||||| |||||||| | |||| || ||||| ||||| ||||||
Sbjct 2374 AGCAGTCATTGATGGTGATCCAGAAGACA---GCACAAACATGATCGGTGAGCTACCTCT 2430
Query 2504 GCAGATCAATAATTTCAGTCAGGGAGACACTAGTGTTAACGTTCCGG--GC-ACAGCGGG 2560
| | ||||| |||| | || |||||||| || ||||||||| | | || | || ||
Sbjct 2431 ACGGTTCAATGATTTTAACCATGGAGACACGAGCGTTAACGTTTCTGTAGCTAAAGAGGA 2490
Query 2561 GCGATTCGAGGAATCTAGTATTGATGATC-TCTCTGGCGTTTCCATGAGTAAAGTATTCT 2619
|| ||| || ||| |||||||| | || || ||||||||||||||||| ||||
Sbjct 2491 A-GAA--GAG---TCGAGTGTTGATGATAGT-TCAGGTGTTTCCATGAGTAAAGTTTTCT 2543
Query 2620 CACAACTGGTGAAATCTGAAGGA 2642
| || ||||| |||||||| |||
Sbjct 2544 CGCAGCTGGTTAAATCTGAGGGA 2566
> Ahg950891 jgi|Araly1|950891|scaffold_802778.1
Length=2570
Score = 185 bits (100), Expect = 1e-45
Identities = 431/583 (74%), Gaps = 54/583 (9%)
Strand=Plus/Plus
Query 1893 TGGAAACAACGGCTTGAGATCTGCATTGG-TGCAGCTAGAGG-CTTGCATTACCTTCACA 1950
||||| ||||| || |||||||||||||| | |||| | || | | || || || ||||
Sbjct 1897 TGGAAGCAACGTCTAGAGATCTGCATTGGAT-CAGCGCGTGGAC-TCCACTATCTCCACA 1954
Query 1951 CGGGTGACTCGAAAC-CGG--TCATTCACAGAGACGTGAA-ATCTGCAAACATAT-TGCT 2005
|||||| | | || || |||| ||| | ||||| || | | | ||||| | | ||
Sbjct 1955 CGGGTG-C-AG-CACAAGGAATCATCCACCGCGACGTTAAGA-CCACTAACAT-TCT-CT 2008
Query 2006 T-GACGAGAACTTCA-TGGCTAAAGTTGCAGACTTTGGACTGTC-CAAGACTGGACCCGA 2062
| ||||||||| | | | ||||||||| | || |||||||| || |||| | | ||| |
Sbjct 2009 TGGACGAGAACCT-AGTCGCTAAAGTTTCTGATTTTGGACTTTCAAAAGA-T-GCCCCTA 2065
Query 2063 GCTTGATC-AGACTCATGTAAGTACTGCTGTCAAAGGAAGTTTTGGTTATCTT-GACCCC 2120
| || | || ||||||||||| || || ||||| ||||| || ||| || ||||||
Sbjct 2066 --TGGAACAAG-GGCATGTAAGTACGGCGGTGAAAGGTAGTTTCGGGTAT-TTAGACCCC 2121
Query 2121 GAGTACTTCAGAAGGCAACAGCTCACAGATAAATCCGATGTTTATTCCTTCGGAGTTGT- 2179
||||||||| | || ||||| ||||| |||||||| |||||||| || ||||| || ||
Sbjct 2122 GAGTACTTCCGCAGACAACAACTCACTGATAAATCTGATGTTTACTCGTTCGGTGTGGTG 2181
Query 2180 TCTCTTCGAGGTT-TTATGTGCTAGACCTGTTATAGACCCAACACTT-CCAAGAG-AGAT 2236
| | ||||||||| || || || || || || ||| |||| ||| || || |||| | |
Sbjct 2182 T-TATTCGAGGTTCTT-TGCGCGAGGCCAGTGATAAACCC-ACAGTTACCTAGAGAACA- 2237
Query 2237 GGTGAATCTT-GCAGAATGGGCTATGAAATGGCAGAAGAAAGGGCA-ACTGGATCAGATC 2294
|| || ||| ||||||| |||||||| | ||| ||||| || | |||| | |||
Sbjct 2238 AGTTAA-CTTAGCAGAATATGCTATGAATTTGCA-TAGAAAAGGTATGTTGGAGAAAATC 2295
Query 2295 ATCGA--CC--AGTCGCTTCGCGGAA-ATATCAG-ACCCGATTCGTTAAGGAAATTTGCG 2348
||||| || | ||| | | |||| | || || | | |||||||| ||||| | |
Sbjct 2296 ATCGATCCCAAAATCG--T-G-GGAACA-ATTAGTA-AAGGGTCGTTAAGAAAATTCGTG 2349
Query 2349 GAAACAGGTGAGAAATGTTTAGCGGATTATGGAGTTGATAGGCCAT-CTATGGGAGATGT 2407
|| | | ||||||||||| || || || || |||||| |||| | |||||||||||
Sbjct 2350 GAGGCTGCAGAGAAATGTTTGGCTGAGTACGGTGTTGATCGGCC-TGGAATGGGAGATGT 2408
Query 2408 GTTGTGGAATCTTGAATACGCTCTGCAGCTTCAAGAAGCAGTC 2450
|||||||||||||||||| ||| |||| ||||||||||| |||
Sbjct 2409 GTTGTGGAATCTTGAATATGCTTTGCAACTTCAAGAAGC-GTC 2450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114499276470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5