BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G46300.1

Length=970
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937339 jgi|Araly1|937339|scaffold_501530.1                        590    8e-168


> Ahg937339 jgi|Araly1|937339|scaffold_501530.1
Length=466

 Score =  590 bits (319),  Expect = 8e-168
 Identities = 420/468 (90%), Gaps = 9/468 (2%)
 Strand=Plus/Plus

Query  284  ACCCTCC-AAAAAAGCGACCATGGCCTCAAAGTGCATAGATGATTGTGTAAACATCAAAA  342
            ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct  1    ACCCTCCAAAAAAAGCGACCATGGCCTCAAAATGCATAGATGCTTGTGTAAACATCAAAA  60

Query  343  GAGACTCCATTTGCGTCCGGCCGGTTATGACTTACGCCAATCTTTACAAGTGGCCGATGG  402
             ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct  61   TAGACTCCATTTGCATCCGGCCTGTTATGACTTACGCCAATCTCTACAAGTGGCCAATGG  120

Query  403  CGGAGGCCGAGTTCGTACGGTCAATCAACCACGACGGAAGCCAGCATCGCACCACGGTGG  462
            ||||||| |||||||||||||||||||   ||||||| ||||||| ||||||||||||||
Sbjct  121  CGGAGGCGGAGTTCGTACGGTCAATCAGTAACGACGGTAGCCAGCGTCGCACCACGGTGG  180

Query  463  TTGACAGCATATCTTGTAGGCAGATGTACCTTAGAAGCTACACATTTTCAACAGAAGAGA  522
            |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||
Sbjct  181  TTGACAGCATATCTTGTAGGCAAATGTACCTTAGAAGCTACACTTTTTCAACAAAAGAGA  240

Query  523  ACGAAGAAGACGGTGATGGAGGT-GATGGCGAAGCAGTT-ACCCGGAGACACAATCAGAG  580
            |||||||||||  |||| ||||  | ||||||||| | | | | ||||| |||| |||||
Sbjct  241  ACGAAGAAGACAATGATAGAGGAAG-TGGCGAAGCCGCTGATC-GGAGAAACAAACAGAG  298

Query  581  TTGTTTTCGAGGAGGAGGAGGGAGAAAGAAGGCGGCCAAGAACGCTATGCGGAATAACAA  640
            |||||||||||||||||| ||||||||||||||||||||||| |||| | |||| ||| |
Sbjct  299  TTGTTTTCGAGGAGGAGGTGGGAGAAAGAAGGCGGCCAAGAAAGCTACGAGGAAGAACCA  358

Query  641  AACATGGTCGTGTAGGACGTTTGTTTTCAGACTAGTACGGAAATGTTTGTCTTGTGCGTC  700
            ||||| |||||||||| ||||||||||  |||| ||| ||||||||||||||||||||||
Sbjct  359  AACATCGTCGTGTAGGGCGTTTGTTTTGGGACTCGTATGGAAATGTTTGTCTTGTGCGTC  418

Query  701  CACTACTAAGGTTACTAATATTGATT-G--ATCACTA-TGAGGATAAT  744
            |||||| ||||||||||||||||||| |  ||||||| |||| |||||
Sbjct  419  CACTACAAAGGTTACTAATATTGATTAGTGATCACTAATGAGAATAAT  466



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36026156565


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5