BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46310.1 Length=375 Score E Sequences producing significant alignments: (Bits) Value Ahg485009 jgi|Araly1|485009|fgenesh2_kg.5__1001__AT3G46310.1 344 2e-94 > Ahg485009 jgi|Araly1|485009|fgenesh2_kg.5__1001__AT3G46310.1 Length=287 Score = 344 bits (186), Expect = 2e-94 Identities = 257/289 (89%), Gaps = 13/289 (4%) Strand=Plus/Plus Query 97 ATGGCTGAGGTAGAGTTCGTACAGTCTATCAGCCAAGACGGTAGTCC-GCGTCGTACTAC 155 ||||| |||||||||||||||| |||||||||||| | ||||| || | |||||||||| Sbjct 1 ATGGCGGAGGTAGAGTTCGTACGGTCTATCAGCCACGGTGGTAG-CCAGGGTCGTACTAC 59 Query 156 GGCGGTGGAAAGTTTATCTTGTAGGCAAATGTATCTTAGGAGCTATACGTTCTCAAGAAA 215 ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 60 AGCGGTGGAAAGCTTATCTTGTAGGCAAATGTACCTTAGGAGCTATACGTTCTCAAAAAA 119 Query 216 AGAGGAGAACGAAGAC---------GGTGGCGGAGGAGCAGGGAGGAAGAAGTTGGCGAA 266 |||||||||||||||| ||||||||||||||||||||||||||| || ||| Sbjct 120 AGAGGAGAACGAAGACGGTGATGGAGGTGGCGGAGGAGCAGGGAGGAAGAAGGCGGGGAA 179 Query 267 GAAAGATATGAGGACGAGTAAAAGGGCGTCACTTAAGG-GATTTGTGGTCCGATTCACAT 325 |||| ||| ||| ||||||||||||||| |||| ||| || |||||||||||||||||| Sbjct 180 GAAATATACAAGGCCGAGTAAAAGGGCGTTACTT-AGGAGAGTTGTGGTCCGATTCACAT 238 Query 326 GGAAATGTTTGTCTTGTACTTGCCCTAATAAGTTTGATCTTAAACAGTG 374 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 GGAAATGTTTGTCTTGTACTTGCCCTAATAAGTTTGATCTTAAACAGTG 287 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13392611739 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5