BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46310.1
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485009 jgi|Araly1|485009|fgenesh2_kg.5__1001__AT3G46310.1 344 2e-94
> Ahg485009 jgi|Araly1|485009|fgenesh2_kg.5__1001__AT3G46310.1
Length=287
Score = 344 bits (186), Expect = 2e-94
Identities = 257/289 (89%), Gaps = 13/289 (4%)
Strand=Plus/Plus
Query 97 ATGGCTGAGGTAGAGTTCGTACAGTCTATCAGCCAAGACGGTAGTCC-GCGTCGTACTAC 155
||||| |||||||||||||||| |||||||||||| | ||||| || | ||||||||||
Sbjct 1 ATGGCGGAGGTAGAGTTCGTACGGTCTATCAGCCACGGTGGTAG-CCAGGGTCGTACTAC 59
Query 156 GGCGGTGGAAAGTTTATCTTGTAGGCAAATGTATCTTAGGAGCTATACGTTCTCAAGAAA 215
||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 60 AGCGGTGGAAAGCTTATCTTGTAGGCAAATGTACCTTAGGAGCTATACGTTCTCAAAAAA 119
Query 216 AGAGGAGAACGAAGAC---------GGTGGCGGAGGAGCAGGGAGGAAGAAGTTGGCGAA 266
|||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 120 AGAGGAGAACGAAGACGGTGATGGAGGTGGCGGAGGAGCAGGGAGGAAGAAGGCGGGGAA 179
Query 267 GAAAGATATGAGGACGAGTAAAAGGGCGTCACTTAAGG-GATTTGTGGTCCGATTCACAT 325
|||| ||| ||| ||||||||||||||| |||| ||| || ||||||||||||||||||
Sbjct 180 GAAATATACAAGGCCGAGTAAAAGGGCGTTACTT-AGGAGAGTTGTGGTCCGATTCACAT 238
Query 326 GGAAATGTTTGTCTTGTACTTGCCCTAATAAGTTTGATCTTAAACAGTG 374
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGAAATGTTTGTCTTGTACTTGCCCTAATAAGTTTGATCTTAAACAGTG 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13392611739
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5